Wall clock time and date at job start Tue Mar 31 2020 09:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47238 * 2 1 4 4 C 1.52995 * 109.46933 * 239.99377 * 2 1 3 5 5 C 1.50698 * 109.47194 * 60.00291 * 4 2 1 6 6 H 1.08004 * 119.99808 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00236 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00024 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00052 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47182 * 89.99721 * 9 7 5 11 11 H 1.48491 * 109.47428 * 210.00188 * 9 7 5 12 12 H 1.48506 * 109.46886 * 329.99991 * 9 7 5 13 13 C 1.53001 * 109.46671 * 119.99688 * 2 1 3 14 14 N 1.46901 * 109.47296 * 299.99595 * 13 2 1 15 15 C 1.46897 * 111.00021 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.47149 * 185.15727 * 15 14 13 17 17 O 1.42895 * 110.26787 * 298.51327 * 16 15 14 18 18 C 1.54350 * 110.29871 * 60.69480 * 16 15 14 19 19 C 1.54352 * 102.38975 * 145.27239 * 18 16 15 20 20 C 1.51371 * 105.17028 * 333.64934 * 19 18 16 21 21 C 1.38491 * 130.39056 * 197.19199 * 20 19 18 22 22 C 1.38099 * 120.21407 * 179.97438 * 21 20 19 23 23 C 1.38258 * 119.93799 * 0.02562 * 22 21 20 24 24 C 1.38097 * 119.92959 * 359.97438 * 23 22 21 25 25 C 1.38217 * 109.75533 * 17.19006 * 20 19 18 26 26 H 1.08999 * 109.46885 * 300.00985 * 1 2 3 27 27 H 1.08999 * 109.46913 * 59.99990 * 1 2 3 28 28 H 1.08993 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47072 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47013 * 299.99352 * 3 2 1 31 31 H 1.08997 * 109.47560 * 59.99379 * 3 2 1 32 32 H 1.09001 * 109.47076 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47289 * 300.00357 * 4 2 1 34 34 H 0.97003 * 119.99772 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46694 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47227 * 59.99842 * 13 2 1 37 37 H 1.00900 * 111.00159 * 303.95702 * 14 13 2 38 38 H 1.09001 * 109.47361 * 305.15493 * 15 14 13 39 39 H 1.08997 * 109.47315 * 65.16128 * 15 14 13 40 40 H 0.96696 * 114.00672 * 300.70040 * 17 16 15 41 41 H 1.09006 * 110.82026 * 263.49203 * 18 16 15 42 42 H 1.08990 * 110.82722 * 27.04392 * 18 16 15 43 43 H 1.08999 * 110.30352 * 214.72404 * 19 18 16 44 44 H 1.09002 * 110.30468 * 92.57546 * 19 18 16 45 45 H 1.07998 * 119.89090 * 359.97014 * 21 20 19 46 46 H 1.08003 * 120.03285 * 180.02562 * 22 21 20 47 47 H 1.07997 * 120.03092 * 180.02562 * 23 22 21 48 48 H 1.08001 * 119.89238 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5377 -0.0111 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8712 -0.4819 -3.7319 8 7 1.4332 0.1383 -4.8057 9 14 2.9450 -2.0008 -3.9032 10 1 2.0864 -3.2115 -3.9491 11 1 3.7374 -1.9081 -5.1556 12 1 3.8650 -2.0902 -2.7409 13 6 2.0399 -0.7212 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0217 -0.6943 3.6704 16 6 1.3896 -0.0249 4.8924 17 8 1.7807 1.3478 4.9624 18 6 -0.1481 -0.1436 4.8324 19 6 -0.5265 -0.2991 6.3207 20 6 0.6931 -0.9090 6.9779 21 6 0.8286 -1.5510 8.1975 22 6 2.0596 -2.0343 8.5954 23 6 3.1609 -1.8767 7.7746 24 6 3.0276 -1.2368 6.5581 25 6 1.7940 -0.7514 6.1572 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7218 -1.2489 33 1 1.6766 -1.7490 -1.2491 34 1 1.6682 -0.1928 -5.6867 35 1 3.1299 -0.7216 1.2491 36 1 1.6765 -1.7489 1.2494 37 1 1.8198 0.9437 2.4402 38 1 1.7366 -1.7460 3.6442 39 1 3.1069 -0.6135 3.7326 40 1 2.7363 1.4819 5.0242 41 1 -0.5904 0.7600 4.4126 42 1 -0.4470 -1.0233 4.2627 43 1 -1.3845 -0.9631 6.4255 44 1 -0.7453 0.6746 6.7591 45 1 -0.0311 -1.6741 8.8395 46 1 2.1619 -2.5349 9.5470 47 1 4.1241 -2.2544 8.0841 48 1 3.8882 -1.1144 5.9172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132184526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:13 Heat of formation + Delta-G solvation = -38.605779 kcal Electronic energy + Delta-G solvation = -25036.647963 eV Core-core repulsion = 21669.424884 eV Total energy + Delta-G solvation = -3367.223079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74117 -38.03558 -37.07757 -34.51843 -34.00973 -32.15542 -31.37039 -29.17572 -28.37023 -27.35944 -26.34830 -25.24312 -23.53005 -22.89524 -21.79023 -21.21270 -20.31986 -17.93704 -17.57222 -16.80749 -16.28879 -15.59412 -15.40485 -15.29958 -14.70460 -14.49730 -14.24412 -14.05365 -13.89070 -13.38056 -13.32244 -12.97679 -12.78418 -12.62648 -12.26523 -12.24744 -11.93484 -11.74682 -11.73673 -11.33051 -11.18130 -11.08120 -10.92227 -10.86767 -10.74406 -10.49090 -10.39853 -10.14088 -9.76917 -9.66764 -9.26890 -9.12308 -8.89771 -8.83737 -8.48505 -8.14134 -5.98691 -3.94672 1.03916 1.11685 3.32774 3.40354 3.43579 3.43803 4.00055 4.10567 4.36192 4.49236 4.52726 4.71810 4.77471 4.80015 4.90848 5.07944 5.21324 5.27552 5.34278 5.38057 5.50095 5.54996 5.62860 5.67296 5.71746 5.78495 5.89311 5.90559 6.01549 6.10144 6.15925 6.19746 6.21998 6.27252 6.39720 6.44236 6.62868 6.71074 6.71481 6.82515 7.09753 7.15184 7.20963 7.29684 7.35420 7.46016 7.48989 7.67035 7.86949 8.61473 9.07541 9.64510 11.14455 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027044 B = 0.002846 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.113744 B = 9835.052854 C =10253.785788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.048 4.048 3 C -0.131 4.131 4 C -0.005 4.005 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.068 3.932 14 N -0.677 5.677 15 C 0.039 3.961 16 C 0.179 3.821 17 O -0.544 6.544 18 C -0.089 4.089 19 C -0.088 4.088 20 C -0.076 4.076 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.127 4.127 24 C -0.096 4.096 25 C -0.129 4.129 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.011 0.989 33 H 0.010 0.990 34 H 0.261 0.739 35 H 0.021 0.979 36 H 0.064 0.936 37 H 0.345 0.655 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.372 0.628 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 -2.644 27.136 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.048 4.048 3 C -0.188 4.188 4 C -0.042 4.042 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.310 5.310 15 C -0.091 4.091 16 C 0.138 3.862 17 O -0.349 6.349 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.076 4.076 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.145 4.145 24 C -0.114 4.114 25 C -0.129 4.129 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.166 0.834 38 H 0.097 0.903 39 H 0.044 0.956 40 H 0.219 0.781 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.112 -2.880 26.892 27.045 hybrid contribution 2.378 -0.874 -0.153 2.538 sum 2.266 -3.753 26.739 27.096 Atomic orbital electron populations 1.21610 0.94496 1.00596 1.00768 1.20403 0.96231 0.95036 0.93133 1.21778 0.99496 0.96466 1.01057 1.19632 0.95760 0.95450 0.93399 1.21141 1.31354 1.13224 0.88667 0.90394 1.25020 0.95830 0.96733 0.96044 1.69911 1.46187 1.40641 0.97813 0.86848 0.81290 0.84091 0.77417 1.20453 1.21600 1.19237 1.22148 0.96169 0.98094 0.89707 1.60415 1.63430 1.06761 1.00375 1.22554 0.96393 0.99474 0.90720 1.20665 0.95807 0.80690 0.89062 1.86613 1.27935 1.23978 1.96394 1.22112 0.91576 1.04109 0.94848 1.21191 0.95204 1.00656 0.95449 1.20661 0.96216 0.96669 0.94044 1.20658 0.97740 0.99146 0.95728 1.21074 0.92682 0.99724 0.99644 1.21037 0.98858 1.00146 0.94498 1.20677 0.96425 0.97896 0.96418 1.21173 0.93965 1.00002 0.97806 0.93556 0.92173 0.94299 0.94268 0.91185 0.94401 0.97026 0.97210 0.92911 0.96103 0.91711 0.83448 0.90314 0.95609 0.78090 0.89035 0.89236 0.90486 0.89934 0.86188 0.85913 0.85908 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 2 C -0.05 -0.91 0.60 -154.51 -0.09 -1.01 16 3 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 4 C 0.00 -0.11 3.11 -27.89 -0.09 -0.19 16 5 C -0.51 -13.98 8.20 -34.44 -0.28 -14.26 16 6 H 0.08 2.30 5.92 -52.48 -0.31 1.99 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.85 13.96 55.43 0.77 -27.08 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.07 1.09 4.64 -3.82 -0.02 1.07 16 14 N -0.68 -9.21 5.33 -113.78 -0.61 -9.82 16 15 C 0.04 0.45 4.59 -3.82 -0.02 0.43 16 16 C 0.18 1.92 1.02 -90.74 -0.09 1.83 16 17 O -0.54 -5.98 12.59 -35.23 -0.44 -6.43 16 18 C -0.09 -0.96 5.98 -25.32 -0.15 -1.11 16 19 C -0.09 -0.83 6.77 -26.85 -0.18 -1.01 16 20 C -0.08 -0.77 6.14 -104.21 -0.64 -1.41 16 21 C -0.11 -1.03 10.04 -39.54 -0.40 -1.43 16 22 C -0.11 -0.93 10.05 -39.62 -0.40 -1.33 16 23 C -0.13 -1.08 10.05 -39.63 -0.40 -1.48 16 24 C -0.10 -0.91 9.78 -39.54 -0.39 -1.29 16 25 C -0.13 -1.35 5.27 -104.21 -0.55 -1.90 16 26 H 0.05 0.80 7.60 -51.93 -0.39 0.40 16 27 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 31 H 0.04 0.60 6.57 -51.93 -0.34 0.26 16 32 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 33 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.35 4.72 6.38 -39.29 -0.25 4.47 16 38 H 0.08 0.96 8.13 -51.93 -0.42 0.53 16 39 H 0.03 0.28 8.04 -51.93 -0.42 -0.13 16 40 H 0.37 2.99 9.08 45.56 0.41 3.41 16 41 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.09 0.99 7.91 -51.93 -0.41 0.57 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.12 0.96 7.96 -52.49 -0.42 0.54 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -30.87 372.80 -9.92 -40.80 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.40 Total: 5.13 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -3.20 Total: -25.39 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.17 Total: -36.90 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.44 Total: -6.43 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.87 -9.92 -40.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132184526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.191 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds