Wall clock time and date at job start Tue Mar 31 2020 08:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38238 * 119.99734 * 179.76790 * 4 3 2 6 6 C 1.38241 * 119.99644 * 0.48053 * 5 4 3 7 7 C 1.50699 * 119.99538 * 179.77244 * 6 5 4 8 8 H 1.09004 * 109.47057 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47304 * 300.02328 * 7 6 5 10 10 C 1.53000 * 109.47396 * 60.02358 * 7 6 5 11 11 C 1.50705 * 109.47126 * 174.99672 * 10 7 6 12 12 O 1.21280 * 119.99889 * 0.02562 * 11 10 7 13 13 N 1.34777 * 119.99622 * 179.97438 * 11 10 7 14 14 C 1.46501 * 120.00387 * 0.02562 * 13 11 10 15 15 C 1.52990 * 109.46979 * 89.99934 * 14 13 11 16 16 C 1.46499 * 119.99561 * 180.02562 * 13 11 10 17 17 C 1.50699 * 109.47327 * 89.99934 * 16 13 11 18 18 H 1.08005 * 120.00277 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00403 * 179.97438 * 17 16 13 20 20 N 1.31515 * 120.00563 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99818 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47310 * 89.99459 * 21 19 17 23 23 H 1.48499 * 109.47040 * 209.99745 * 21 19 17 24 24 H 1.48504 * 109.46960 * 329.99495 * 21 19 17 25 25 C 1.38231 * 120.00246 * 359.79479 * 6 5 4 26 26 C 1.38233 * 119.99821 * 359.95399 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 33 33 H 1.07995 * 120.00141 * 180.25854 * 5 4 3 34 34 H 1.09000 * 109.47267 * 59.99778 * 9 7 6 35 35 H 1.09001 * 109.47276 * 180.02562 * 9 7 6 36 36 H 1.09008 * 109.46609 * 300.00126 * 9 7 6 37 37 H 1.09000 * 109.47317 * 294.99647 * 10 7 6 38 38 H 1.08996 * 109.47312 * 54.99846 * 10 7 6 39 39 H 1.08999 * 109.46863 * 210.00259 * 14 13 11 40 40 H 1.08996 * 109.46445 * 329.99719 * 14 13 11 41 41 H 1.08999 * 109.47588 * 299.99880 * 15 14 13 42 42 H 1.09000 * 109.47138 * 60.00122 * 15 14 13 43 43 H 1.09003 * 109.47155 * 180.02562 * 15 14 13 44 44 H 1.08996 * 109.47171 * 209.99938 * 16 13 11 45 45 H 1.08997 * 109.47435 * 330.00143 * 16 13 11 46 46 H 0.97002 * 120.00457 * 180.02562 * 20 19 17 47 47 H 1.07996 * 120.00113 * 179.97438 * 25 6 5 48 48 H 1.08003 * 119.99863 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9542 4.0273 0.0002 7 6 3.4564 5.4481 0.0001 8 1 3.5776 5.7907 1.0278 9 6 4.8042 5.5127 -0.7212 10 6 2.4486 6.3454 -0.7210 11 6 2.8893 7.7826 -0.6146 12 8 3.9093 8.0617 -0.0208 13 7 2.1504 8.7576 -1.1802 14 6 0.9186 8.4204 -1.8979 15 6 -0.2614 8.4434 -0.9244 16 6 2.5792 10.1547 -1.0772 17 6 3.4661 10.4955 -2.2469 18 1 3.6880 9.7465 -2.9927 19 6 3.9936 11.7638 -2.3656 20 7 4.7673 12.0614 -3.3866 21 14 3.6094 13.0596 -1.0760 22 1 4.6307 13.0045 0.0006 23 1 3.6257 14.4044 -1.7055 24 1 2.2664 12.7998 -0.4981 25 6 2.7239 3.3756 1.1972 26 6 2.2627 2.0725 1.1972 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0926 1.5599 -2.1324 33 1 2.9045 3.8846 -2.1323 34 1 4.6831 5.1701 -1.7488 35 1 5.1677 6.5403 -0.7208 36 1 5.5223 4.8734 -0.2073 37 1 2.3936 6.0590 -1.7713 38 1 1.4668 6.2315 -0.2615 39 1 0.7494 9.1485 -2.6912 40 1 1.0121 7.4251 -2.3322 41 1 -0.0922 7.7152 -0.1311 42 1 -0.3548 9.4387 -0.4901 43 1 -1.1779 8.1920 -1.4582 44 1 1.7042 10.8046 -1.0832 45 1 3.1316 10.2977 -0.1486 46 1 5.1387 12.9536 -3.4699 47 1 2.9039 3.8846 2.1325 48 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133408354.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:43 Heat of formation + Delta-G solvation = -36.275920 kcal Electronic energy + Delta-G solvation = -24769.168048 eV Core-core repulsion = 21402.045999 eV Total energy + Delta-G solvation = -3367.122048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98582 -39.04917 -35.99280 -35.18160 -33.12340 -32.62027 -30.98125 -30.33790 -29.10764 -28.24652 -26.71559 -24.39008 -22.95531 -22.86095 -22.53970 -21.39085 -19.90769 -18.15117 -16.97268 -16.82624 -15.90579 -15.89144 -15.32019 -15.03043 -14.85037 -14.13170 -14.01251 -13.94895 -13.67621 -13.45091 -13.30053 -13.13483 -13.03385 -12.74295 -12.56312 -12.30806 -11.94569 -11.88908 -11.77187 -11.54539 -11.46743 -11.34222 -11.08334 -10.94904 -10.86313 -10.71866 -10.63044 -10.51090 -10.38519 -10.12995 -9.52470 -8.96350 -8.88781 -8.57570 -8.51814 -7.68086 -6.07435 -4.05794 1.28681 1.36240 3.29838 3.35823 3.37683 3.39695 3.66683 3.88504 4.40705 4.55647 4.64126 4.79328 4.89594 4.95607 5.09951 5.17300 5.19664 5.25439 5.27883 5.29333 5.35280 5.43854 5.45576 5.56840 5.61957 5.63564 5.71989 5.76541 5.85120 5.90010 5.92023 6.01479 6.04451 6.07469 6.16703 6.21333 6.33433 6.40846 6.42940 6.53297 6.69426 6.74141 6.78032 6.97097 6.98531 7.39545 7.63280 8.30452 8.49084 8.95023 9.04006 9.53301 11.05981 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.002962 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.711178 B = 9452.063759 C = 9817.203487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.071 4.071 7 C -0.036 4.036 8 H 0.084 0.916 9 C -0.149 4.149 10 C -0.131 4.131 11 C 0.508 3.492 12 O -0.539 6.539 13 N -0.594 5.594 14 C 0.107 3.893 15 C -0.170 4.170 16 C 0.216 3.784 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.876 3.124 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.114 4.114 26 C -0.118 4.118 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.036 0.964 46 H 0.264 0.736 47 H 0.121 0.879 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.311 -21.614 6.340 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.072 4.072 7 C -0.054 4.054 8 H 0.102 0.898 9 C -0.206 4.206 10 C -0.171 4.171 11 C 0.296 3.704 12 O -0.417 6.417 13 N -0.326 5.326 14 C -0.018 4.018 15 C -0.228 4.228 16 C 0.095 3.905 17 C -0.565 4.565 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.132 4.132 26 C -0.136 4.136 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.139 0.861 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.669 -21.285 6.563 24.282 hybrid contribution -0.204 0.808 0.436 0.940 sum -9.873 -20.478 6.999 23.786 Atomic orbital electron populations 1.21749 0.94844 1.01504 1.02287 1.20518 0.96105 0.92883 1.02584 1.19841 1.00015 0.96182 0.93303 1.20985 1.00214 0.94915 0.97349 1.21037 0.99322 0.94581 0.97930 1.19994 0.98067 0.96013 0.93076 1.19896 0.94990 0.89269 1.01287 0.89786 1.21964 0.95351 1.04279 0.98969 1.21784 1.00035 0.92961 1.02348 1.20337 0.83872 0.86945 0.79283 1.90626 1.24300 1.83570 1.43154 1.47957 1.23118 1.08543 1.52935 1.21425 0.84048 1.01389 0.94890 1.22229 0.98161 1.02329 1.00080 1.19628 0.95426 0.77029 0.98415 1.21330 1.29135 0.97917 1.08083 0.90806 1.24860 0.94548 0.98233 0.95424 1.69898 1.32984 1.21020 1.29791 0.86853 0.79466 0.81186 0.82187 1.19942 1.21119 1.19111 1.21083 0.99707 0.94759 0.97700 1.20963 1.00342 0.94919 0.97334 0.92579 0.92584 0.92520 0.91283 0.91230 0.86384 0.86001 0.93300 0.89526 0.93225 0.89364 0.89606 0.89858 0.91378 0.92959 0.92296 0.92042 0.95421 0.94644 0.92605 0.86128 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.62 16 2 C -0.08 -0.61 6.07 -27.88 -0.17 -0.78 16 3 C -0.09 -0.90 5.13 -104.62 -0.54 -1.44 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 5 C -0.11 -1.25 8.76 -39.58 -0.35 -1.60 16 6 C -0.07 -0.87 4.78 -104.62 -0.50 -1.37 16 7 C -0.04 -0.50 2.21 -91.77 -0.20 -0.71 16 8 H 0.08 1.26 7.69 -51.93 -0.40 0.86 16 9 C -0.15 -2.27 8.75 37.16 0.33 -1.94 16 10 C -0.13 -1.92 3.47 -27.88 -0.10 -2.01 16 11 C 0.51 10.12 7.39 -10.98 -0.08 10.04 16 12 O -0.54 -12.79 13.54 5.56 0.08 -12.72 16 13 N -0.59 -12.11 2.46 -175.07 -0.43 -12.54 16 14 C 0.11 1.66 5.93 -4.05 -0.02 1.64 16 15 C -0.17 -2.17 10.24 37.15 0.38 -1.79 16 16 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 17 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 18 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 19 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 21 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 22 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 25 C -0.11 -1.29 9.67 -39.59 -0.38 -1.67 16 26 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.12 1.30 7.16 -52.49 -0.38 0.93 16 34 H 0.05 0.69 7.39 -51.93 -0.38 0.30 16 35 H 0.09 1.63 5.95 -51.93 -0.31 1.32 16 36 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.09 1.18 6.83 -51.93 -0.35 0.83 16 38 H 0.09 1.10 7.19 -51.93 -0.37 0.73 16 39 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 40 H 0.07 0.90 6.44 -51.93 -0.33 0.57 16 41 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 45 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.12 1.23 7.95 -52.49 -0.42 0.81 16 48 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -33.12 382.89 -9.26 -42.38 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.28 Total: 0.68 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -2.50 Total: -13.59 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.34 Total: -39.55 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.12 -9.26 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133408354.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.103 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds