Wall clock time and date at job start Tue Mar 31 2020 08:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38238 * 119.99734 * 179.76790 * 4 3 2 6 6 C 1.38241 * 119.99644 * 0.48053 * 5 4 3 7 7 C 1.50699 * 119.99538 * 179.77244 * 6 5 4 8 8 H 1.09004 * 109.47057 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47304 * 300.02328 * 7 6 5 10 10 C 1.53000 * 109.47396 * 60.02358 * 7 6 5 11 11 C 1.50705 * 109.47126 * 174.99672 * 10 7 6 12 12 O 1.21280 * 119.99889 * 0.02562 * 11 10 7 13 13 N 1.34777 * 119.99622 * 179.97438 * 11 10 7 14 14 C 1.46501 * 120.00387 * 0.02562 * 13 11 10 15 15 C 1.52990 * 109.46979 * 89.99934 * 14 13 11 16 16 C 1.46499 * 119.99561 * 180.02562 * 13 11 10 17 17 C 1.50699 * 109.47327 * 89.99934 * 16 13 11 18 18 H 1.08005 * 120.00277 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00403 * 179.97438 * 17 16 13 20 20 N 1.31515 * 120.00563 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99818 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47310 * 89.99459 * 21 19 17 23 23 H 1.48499 * 109.47040 * 209.99745 * 21 19 17 24 24 H 1.48504 * 109.46960 * 329.99495 * 21 19 17 25 25 C 1.38231 * 120.00246 * 359.79479 * 6 5 4 26 26 C 1.38233 * 119.99821 * 359.95399 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 33 33 H 1.07995 * 120.00141 * 180.25854 * 5 4 3 34 34 H 1.09000 * 109.47267 * 59.99778 * 9 7 6 35 35 H 1.09001 * 109.47276 * 180.02562 * 9 7 6 36 36 H 1.09008 * 109.46609 * 300.00126 * 9 7 6 37 37 H 1.09000 * 109.47317 * 294.99647 * 10 7 6 38 38 H 1.08996 * 109.47312 * 54.99846 * 10 7 6 39 39 H 1.08999 * 109.46863 * 210.00259 * 14 13 11 40 40 H 1.08996 * 109.46445 * 329.99719 * 14 13 11 41 41 H 1.08999 * 109.47588 * 299.99880 * 15 14 13 42 42 H 1.09000 * 109.47138 * 60.00122 * 15 14 13 43 43 H 1.09003 * 109.47155 * 180.02562 * 15 14 13 44 44 H 1.08996 * 109.47171 * 209.99938 * 16 13 11 45 45 H 1.08997 * 109.47435 * 330.00143 * 16 13 11 46 46 H 0.97002 * 120.00457 * 180.02562 * 20 19 17 47 47 H 1.07996 * 120.00113 * 179.97438 * 25 6 5 48 48 H 1.08003 * 119.99863 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9542 4.0273 0.0002 7 6 3.4564 5.4481 0.0001 8 1 3.5776 5.7907 1.0278 9 6 4.8042 5.5127 -0.7212 10 6 2.4486 6.3454 -0.7210 11 6 2.8893 7.7826 -0.6146 12 8 3.9093 8.0617 -0.0208 13 7 2.1504 8.7576 -1.1802 14 6 0.9186 8.4204 -1.8979 15 6 -0.2614 8.4434 -0.9244 16 6 2.5792 10.1547 -1.0772 17 6 3.4661 10.4955 -2.2469 18 1 3.6880 9.7465 -2.9927 19 6 3.9936 11.7638 -2.3656 20 7 4.7673 12.0614 -3.3866 21 14 3.6094 13.0596 -1.0760 22 1 4.6307 13.0045 0.0006 23 1 3.6257 14.4044 -1.7055 24 1 2.2664 12.7998 -0.4981 25 6 2.7239 3.3756 1.1972 26 6 2.2627 2.0725 1.1972 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0926 1.5599 -2.1324 33 1 2.9045 3.8846 -2.1323 34 1 4.6831 5.1701 -1.7488 35 1 5.1677 6.5403 -0.7208 36 1 5.5223 4.8734 -0.2073 37 1 2.3936 6.0590 -1.7713 38 1 1.4668 6.2315 -0.2615 39 1 0.7494 9.1485 -2.6912 40 1 1.0121 7.4251 -2.3322 41 1 -0.0922 7.7152 -0.1311 42 1 -0.3548 9.4387 -0.4901 43 1 -1.1779 8.1920 -1.4582 44 1 1.7042 10.8046 -1.0832 45 1 3.1316 10.2977 -0.1486 46 1 5.1387 12.9536 -3.4699 47 1 2.9039 3.8846 2.1325 48 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133408354.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:43 Heat of formation + Delta-G solvation = -53.847489 kcal Electronic energy + Delta-G solvation = -24769.930008 eV Core-core repulsion = 21402.045999 eV Total energy + Delta-G solvation = -3367.884009 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16511 -40.24463 -37.27152 -36.47422 -34.86474 -33.87012 -31.89555 -31.76627 -30.34786 -29.37837 -28.30058 -25.29681 -24.43780 -24.01486 -23.65029 -22.38389 -20.90845 -19.64881 -19.10474 -18.18506 -17.28001 -16.82677 -16.61563 -16.30324 -15.89840 -15.81151 -15.12859 -14.81502 -14.69470 -14.64156 -14.46812 -14.28116 -14.10842 -13.97605 -13.83020 -13.65213 -13.48853 -13.21138 -12.98673 -12.68178 -12.51426 -12.42102 -12.37235 -12.24817 -12.03070 -11.98844 -11.90002 -11.74517 -11.73939 -11.55975 -11.43711 -10.83625 -10.50209 -9.75564 -9.38362 -9.35013 -8.34437 -6.38932 0.46862 0.56734 1.31146 1.35174 1.43586 1.84543 2.29925 2.34454 2.88980 2.99865 3.58334 3.79011 3.93554 4.05078 4.09571 4.10664 4.20429 4.21867 4.37463 4.42704 4.49431 4.57142 4.61320 4.64194 4.66895 4.69479 4.76783 4.78563 4.88034 4.89719 4.99047 5.01918 5.04560 5.11659 5.13615 5.19710 5.21381 5.30684 5.37920 5.39778 5.44183 5.47436 5.61711 5.68959 5.79226 5.82454 6.18422 6.24738 6.62169 6.75221 7.22021 7.47515 8.82524 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.002962 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.711178 B = 9452.063759 C = 9817.203487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.083 4.083 7 C -0.028 4.028 8 H 0.070 0.930 9 C -0.144 4.144 10 C -0.116 4.116 11 C 0.498 3.502 12 O -0.587 6.587 13 N -0.603 5.603 14 C 0.099 3.901 15 C -0.160 4.160 16 C 0.225 3.775 17 C -0.532 4.532 18 H 0.028 0.972 19 C 0.010 3.990 20 N -0.946 5.946 21 Si 0.947 3.053 22 H -0.277 1.277 23 H -0.274 1.274 24 H -0.239 1.239 25 C -0.123 4.123 26 C -0.121 4.121 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.017 0.983 46 H 0.268 0.732 47 H 0.125 0.875 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.947 -23.556 7.363 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.083 4.083 7 C -0.047 4.047 8 H 0.088 0.912 9 C -0.201 4.201 10 C -0.156 4.156 11 C 0.288 3.712 12 O -0.468 6.468 13 N -0.334 5.334 14 C -0.024 4.024 15 C -0.218 4.218 16 C 0.103 3.897 17 C -0.571 4.571 18 H 0.047 0.953 19 C -0.188 4.188 20 N -0.586 5.586 21 Si 0.770 3.230 22 H -0.203 1.203 23 H -0.199 1.199 24 H -0.163 1.163 25 C -0.141 4.141 26 C -0.139 4.139 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.077 0.923 47 H 0.143 0.857 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.356 -23.260 7.572 27.405 hybrid contribution 0.661 1.286 0.042 1.446 sum -11.696 -21.974 7.613 26.031 Atomic orbital electron populations 1.21734 0.94277 1.02306 1.01895 1.20574 0.96485 0.91444 1.03517 1.20176 0.98856 0.97245 0.92973 1.21229 0.99727 0.94506 0.98451 1.21130 0.99581 0.95260 0.97645 1.19759 0.99772 0.94795 0.94020 1.19747 0.94119 0.90785 1.00046 0.91203 1.21875 0.96579 1.01651 1.00025 1.21760 1.01216 0.88872 1.03721 1.21313 0.82993 0.88854 0.78083 1.90604 1.26370 1.84597 1.45197 1.48097 1.24783 1.07062 1.53456 1.21744 0.83103 1.02380 0.95143 1.22151 0.97915 1.01994 0.99765 1.19267 0.94927 0.80151 0.95396 1.21554 1.29977 0.97101 1.08466 0.95340 1.25845 0.94243 1.00895 0.97785 1.70048 1.34483 1.21952 1.32094 0.85726 0.80386 0.78051 0.78852 1.20259 1.19950 1.16259 1.21220 0.99887 0.95465 0.97571 1.21211 0.99784 0.94465 0.98466 0.92945 0.91244 0.92933 0.90355 0.90376 0.84617 0.85730 0.92351 0.93734 0.92388 0.87741 0.86895 0.91108 0.88721 0.92086 0.93522 0.88815 0.93662 0.96506 0.92307 0.85731 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 71.98 0.71 -0.81 16 2 C -0.08 -0.96 6.07 29.85 0.18 -0.78 16 3 C -0.09 -1.53 5.13 -19.86 -0.10 -1.64 16 4 C -0.12 -2.15 9.70 22.27 0.22 -1.93 16 5 C -0.12 -2.45 8.76 22.27 0.20 -2.25 16 6 C -0.08 -1.92 4.78 -19.87 -0.09 -2.01 16 7 C -0.03 -0.79 2.21 -11.54 -0.03 -0.81 16 8 H 0.07 2.14 7.69 -2.38 -0.02 2.12 16 9 C -0.14 -4.54 8.75 71.98 0.63 -3.91 16 10 C -0.12 -3.27 3.47 29.85 0.10 -3.17 16 11 C 0.50 20.12 7.39 87.66 0.65 20.77 16 12 O -0.59 -29.16 13.54 -3.03 -0.04 -29.20 16 13 N -0.60 -24.65 2.46 -826.19 -2.03 -26.68 16 14 C 0.10 2.92 5.93 86.38 0.51 3.44 16 15 C -0.16 -3.63 10.24 71.98 0.74 -2.89 16 16 C 0.23 11.15 4.23 85.63 0.36 11.52 16 17 C -0.53 -31.76 9.94 25.60 0.25 -31.50 16 18 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 19 C 0.01 0.61 5.47 84.65 0.46 1.07 16 20 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 21 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 25 C -0.12 -2.58 9.67 22.27 0.22 -2.36 16 26 C -0.12 -2.14 9.70 22.27 0.22 -1.92 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 31 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 32 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.12 2.44 7.16 -2.91 -0.02 2.42 16 34 H 0.06 1.67 7.39 -2.39 -0.02 1.65 16 35 H 0.04 1.78 5.95 -2.39 -0.01 1.77 16 36 H 0.06 1.66 8.14 -2.38 -0.02 1.65 16 37 H 0.10 2.62 6.83 -2.39 -0.02 2.61 16 38 H 0.11 2.59 7.19 -2.39 -0.02 2.58 16 39 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 40 H 0.09 2.28 6.44 -2.39 -0.02 2.27 16 41 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 2.08 7.13 -2.39 -0.02 2.06 16 45 H 0.02 0.90 6.85 -2.39 -0.02 0.88 16 46 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 47 H 0.12 2.41 7.95 -2.91 -0.02 2.39 16 48 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -75.96 382.89 6.19 -69.77 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.86 Total: 18.41 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 5.22 Total: -19.20 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -1.73 Total: -86.86 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.04 Total: -29.20 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -75.96 6.19 -69.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133408354.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.922 kcal (2) G-P(sol) polarization free energy of solvation -75.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds