Wall clock time and date at job start Tue Mar 31 2020 07:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 110.01431 * 2 1 4 4 C 1.54269 * 110.03056 * 238.55804 * 2 1 3 5 5 C 1.55027 * 104.28260 * 264.23233 * 4 2 1 6 6 C 1.54891 * 102.68260 * 322.23439 * 5 4 2 7 7 H 1.08997 * 110.49120 * 279.03046 * 6 5 4 8 8 N 1.46507 * 110.48875 * 156.51266 * 6 5 4 9 9 C 1.39672 * 119.99413 * 88.24082 * 8 6 5 10 10 C 1.38968 * 120.05029 * 0.02562 * 9 8 6 11 11 C 1.38111 * 120.03897 * 179.97438 * 10 9 8 12 12 C 1.38217 * 120.12546 * 359.97438 * 11 10 9 13 13 C 1.38775 * 120.09215 * 359.97438 * 12 11 10 14 14 O 1.35901 * 120.01328 * 180.02562 * 13 12 11 15 15 C 1.42895 * 117.00221 * 359.97438 * 14 13 12 16 16 C 1.53006 * 109.47036 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47184 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99944 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.46866 * 90.00390 * 21 19 17 23 23 H 1.48502 * 109.47245 * 210.00175 * 21 19 17 24 24 H 1.48494 * 109.47271 * 330.00312 * 21 19 17 25 25 C 1.38608 * 119.96503 * 0.29634 * 13 12 11 26 26 C 1.53877 * 110.03198 * 121.39450 * 2 1 3 27 27 H 1.08996 * 109.47394 * 298.60616 * 1 2 3 28 28 H 1.09005 * 109.47163 * 58.61030 * 1 2 3 29 29 H 1.09005 * 109.47197 * 178.60916 * 1 2 3 30 30 H 1.09011 * 109.46752 * 181.39204 * 3 2 1 31 31 H 1.08996 * 109.47421 * 301.38748 * 3 2 1 32 32 H 1.08995 * 109.47443 * 61.39300 * 3 2 1 33 33 H 1.09000 * 110.48608 * 23.00200 * 4 2 1 34 34 H 1.09004 * 110.48600 * 145.51775 * 4 2 1 35 35 H 1.08999 * 110.87762 * 203.90244 * 5 4 2 36 36 H 1.08996 * 110.69950 * 80.48327 * 5 4 2 37 37 H 0.96994 * 120.00023 * 268.24748 * 8 6 5 38 38 H 1.08006 * 119.98112 * 359.94760 * 10 9 8 39 39 H 1.07999 * 119.93615 * 179.97438 * 11 10 9 40 40 H 1.08003 * 119.95146 * 180.02562 * 12 11 10 41 41 H 1.09001 * 109.46798 * 60.00452 * 15 14 13 42 42 H 1.08993 * 109.47318 * 299.99917 * 15 14 13 43 43 H 1.09001 * 109.46801 * 300.00369 * 16 15 14 44 44 H 1.09001 * 109.46998 * 59.99965 * 16 15 14 45 45 H 0.96997 * 119.99752 * 179.97438 * 20 19 17 46 46 H 1.08007 * 120.06477 * 179.72460 * 25 13 12 47 47 H 1.09000 * 110.03358 * 359.97438 * 26 2 1 48 48 H 1.09000 * 110.06989 * 238.59206 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4375 0.0000 4 6 2.0584 -0.7560 -1.2366 5 6 2.3313 -2.1918 -0.7193 6 6 2.8875 -1.9404 0.7043 7 1 3.9443 -1.6771 0.6600 8 7 2.6894 -3.1215 1.5482 9 6 3.6560 -4.1294 1.5766 10 6 4.8060 -4.0126 0.8052 11 6 5.7618 -5.0092 0.8339 12 6 5.5778 -6.1242 1.6296 13 6 4.4318 -6.2458 2.4028 14 8 4.2527 -7.3426 3.1850 15 6 5.2842 -8.3313 3.1620 16 6 4.9080 -9.4826 4.0970 17 6 5.9955 -10.5256 4.0723 18 1 6.8679 -10.3815 3.4521 19 6 5.8772 -11.6632 4.8422 20 7 4.8151 -11.8384 5.5978 21 14 7.2255 -12.9557 4.8121 22 1 8.2289 -12.6488 5.8631 23 1 6.6344 -14.2938 5.0678 24 1 7.8852 -12.9520 3.4817 25 6 3.4675 -5.2506 2.3727 26 6 2.0571 -0.7531 1.2340 27 1 -0.3634 0.4920 0.9022 28 1 -0.3634 0.5353 -0.8773 29 1 -0.3634 -1.0274 -0.0249 30 1 3.1434 1.4272 -0.0250 31 1 1.6751 1.9621 -0.8772 32 1 1.7157 1.9473 0.9022 33 1 1.3061 -0.7705 -2.0251 34 1 2.9799 -0.2994 -1.5979 35 1 3.0727 -2.6941 -1.3406 36 1 1.4071 -2.7680 -0.6766 37 1 1.8871 -3.2035 2.0871 38 1 4.9522 -3.1423 0.1826 39 1 6.6548 -4.9169 0.2335 40 1 6.3272 -6.9016 1.6502 41 1 6.2221 -7.8855 3.4931 42 1 5.4007 -8.7113 2.1471 43 1 4.7911 -9.1029 5.1120 44 1 3.9701 -9.9282 3.7655 45 1 4.7318 -12.6389 6.1392 46 1 2.5730 -5.3457 2.9704 47 1 1.2229 -1.1182 1.8332 48 1 2.6865 -0.0951 1.8332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149882265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:46 Heat of formation + Delta-G solvation = -43.237030 kcal Electronic energy + Delta-G solvation = -23842.928177 eV Core-core repulsion = 20475.504272 eV Total energy + Delta-G solvation = -3367.423905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.07508 -39.30399 -37.41300 -34.81222 -33.31307 -31.72478 -30.70739 -29.61280 -28.93334 -27.74971 -27.46199 -25.05690 -24.42801 -22.53386 -21.99729 -20.69479 -20.16425 -19.14004 -18.03452 -16.50291 -16.30294 -15.81511 -15.64491 -15.22053 -14.96566 -14.91571 -14.53157 -14.23738 -14.07589 -13.73222 -13.34191 -13.32486 -13.07812 -12.69088 -12.45566 -12.29519 -12.21677 -11.96795 -11.74438 -11.44957 -11.42578 -11.22558 -11.13236 -10.93576 -10.88638 -10.82201 -10.76601 -10.70191 -10.40158 -9.93206 -9.66263 -9.60956 -9.26096 -8.42231 -7.90661 -7.27390 -6.07450 -4.11747 1.75965 1.91575 3.25764 3.29473 3.35451 3.38711 4.03237 4.08709 4.20204 4.24609 4.38627 4.45384 4.82623 4.92930 4.97099 5.03788 5.08138 5.14915 5.22841 5.26431 5.28888 5.36618 5.41717 5.49220 5.51261 5.58548 5.59277 5.63590 5.67973 5.76319 5.81196 5.85400 5.93051 5.97802 6.04618 6.11706 6.13530 6.17688 6.46802 6.66541 6.71418 6.80904 6.93732 7.44729 7.55789 7.68628 7.72522 7.87082 8.15672 8.28237 8.93941 9.52284 11.04169 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.043080 B = 0.002045 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.804654 B =13687.931134 C =14046.569452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.115 4.115 5 C -0.139 4.139 6 C 0.151 3.849 7 H 0.084 0.916 8 N -0.742 5.742 9 C 0.248 3.752 10 C -0.245 4.245 11 C -0.037 4.037 12 C -0.265 4.265 13 C 0.188 3.812 14 O -0.317 6.317 15 C 0.066 3.934 16 C 0.025 3.975 17 C -0.525 4.525 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.239 4.239 26 C -0.122 4.122 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.397 0.603 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.123 0.877 47 H 0.071 0.929 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 26.312 -13.140 30.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.197 4.197 4 C -0.153 4.153 5 C -0.178 4.178 6 C 0.045 3.955 7 H 0.102 0.898 8 N -0.371 5.371 9 C 0.146 3.854 10 C -0.267 4.267 11 C -0.056 4.056 12 C -0.286 4.286 13 C 0.140 3.860 14 O -0.229 6.229 15 C -0.008 4.008 16 C -0.013 4.013 17 C -0.563 4.563 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.262 4.262 26 C -0.160 4.160 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.232 0.768 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.141 0.859 47 H 0.089 0.911 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.338 26.262 -12.984 29.975 hybrid contribution 0.586 -0.860 0.165 1.054 sum -5.752 25.402 -12.819 29.029 Atomic orbital electron populations 1.21918 0.94213 1.01854 1.01623 1.21121 0.95666 0.95221 0.94853 1.21929 1.00920 0.95204 1.01682 1.22481 1.00961 0.95103 0.96757 1.23014 1.01600 0.96611 0.96598 1.21720 0.99688 0.84603 0.89526 0.89772 1.44675 1.22390 1.19638 1.50416 1.17364 0.88482 0.87205 0.92387 1.20404 0.96272 1.02276 1.07748 1.20615 0.97255 0.92200 0.95547 1.21139 1.00210 1.02127 1.05086 1.18822 0.92313 0.86606 0.88302 1.86144 1.47639 1.28188 1.60967 1.23306 0.88426 0.87845 1.01183 1.19130 0.97967 0.89908 0.94246 1.20983 1.04982 1.03675 1.26687 0.92346 1.24996 0.95922 0.98195 0.95154 1.69981 1.27721 1.27754 1.27357 0.86484 0.81681 0.80711 0.78483 1.20521 1.21078 1.19763 1.19669 1.02312 0.95246 1.09020 1.22535 0.99722 0.96422 0.97344 0.92701 0.92686 0.92484 0.92483 0.92663 0.92681 0.91468 0.91385 0.91210 0.91064 0.76791 0.86680 0.86439 0.85639 0.93112 0.93109 0.95445 0.95434 0.92751 0.85855 0.91072 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.14 37.16 0.30 -0.49 16 2 C -0.07 -0.41 0.94 -153.39 -0.14 -0.55 16 3 C -0.14 -0.75 8.16 37.15 0.30 -0.44 16 4 C -0.12 -0.72 5.90 -25.00 -0.15 -0.87 16 5 C -0.14 -1.09 6.59 -24.66 -0.16 -1.25 16 6 C 0.15 1.25 2.86 -66.27 -0.19 1.06 16 7 H 0.08 0.73 6.50 -51.93 -0.34 0.40 16 8 N -0.74 -7.65 5.35 -50.58 -0.27 -7.92 16 9 C 0.25 3.36 6.65 -83.81 -0.56 2.80 16 10 C -0.24 -3.20 9.21 -39.36 -0.36 -3.56 16 11 C -0.04 -0.52 10.03 -39.64 -0.40 -0.92 16 12 C -0.27 -4.42 9.04 -39.39 -0.36 -4.77 16 13 C 0.19 3.46 6.68 -39.25 -0.26 3.20 16 14 O -0.32 -6.81 10.13 -19.43 -0.20 -7.00 16 15 C 0.07 1.48 4.68 37.16 0.17 1.65 16 16 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 17 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 21 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.24 -3.84 9.83 -39.24 -0.39 -4.23 16 26 C -0.12 -0.83 5.84 -25.61 -0.15 -0.98 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.30 8.12 -51.92 -0.42 -0.12 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.40 7.84 -51.93 -0.41 0.00 16 34 H 0.07 0.40 7.84 -51.93 -0.41 0.00 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 3.68 8.36 -40.82 -0.34 3.33 16 38 H 0.12 1.26 6.24 -52.48 -0.33 0.93 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.13 2.07 6.29 -52.48 -0.33 1.74 16 41 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 42 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 47 H 0.07 0.48 7.25 -51.93 -0.38 0.10 16 48 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -30.51 380.98 -10.24 -40.75 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.33 Total: 0.41 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -2.90 Total: -22.43 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.47 Total: -33.95 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.20 Total: -7.00 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.51 -10.24 -40.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149882265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.486 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds