Wall clock time and date at job start Tue Mar 31 2020 08:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 C 1.53000 * 109.47508 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47264 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46829 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46586 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00208 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99469 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99717 * 175.03884 * 9 7 6 11 11 H 1.09001 * 109.47081 * 38.67413 * 10 9 7 12 12 C 1.53001 * 109.47016 * 278.67071 * 10 9 7 13 13 C 1.50701 * 109.46726 * 174.20469 * 12 10 9 14 14 H 1.08000 * 120.00052 * 354.86058 * 13 12 10 15 15 C 1.37877 * 119.99782 * 174.58567 * 13 12 10 16 16 N 1.31518 * 119.99836 * 0.27267 * 15 13 12 17 17 Si 1.86795 * 120.00105 * 180.27528 * 15 13 12 18 18 H 1.48500 * 109.47054 * 59.99830 * 17 15 13 19 19 H 1.48502 * 109.47164 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47095 * 299.99805 * 17 15 13 21 21 C 1.50700 * 109.46855 * 158.67031 * 10 9 7 22 22 C 1.38227 * 119.99988 * 39.72685 * 21 10 9 23 23 C 1.38237 * 119.99683 * 179.78655 * 22 21 10 24 24 C 1.38236 * 120.00247 * 0.44407 * 23 22 21 25 25 C 1.38236 * 119.99844 * 359.80810 * 24 23 22 26 26 C 1.38233 * 119.99580 * 220.00096 * 21 10 9 27 27 H 1.09000 * 109.47410 * 300.00154 * 1 2 3 28 28 H 1.09002 * 109.47470 * 60.00715 * 1 2 3 29 29 H 1.09003 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47410 * 239.99846 * 2 1 3 31 31 H 1.09002 * 109.47470 * 119.99285 * 2 1 3 32 32 H 1.09000 * 109.47124 * 59.99670 * 3 2 1 33 33 H 1.09007 * 109.47022 * 299.99688 * 3 2 1 34 34 H 1.09000 * 109.47308 * 59.99648 * 4 3 2 35 35 H 1.09004 * 109.47108 * 299.99887 * 4 3 2 36 36 H 1.09003 * 109.46953 * 60.00287 * 5 4 3 37 37 H 1.08993 * 109.46936 * 299.99787 * 5 4 3 38 38 H 1.08996 * 109.46645 * 60.00237 * 6 5 4 39 39 H 1.08998 * 109.46817 * 300.00186 * 6 5 4 40 40 H 0.96995 * 120.00341 * 355.03350 * 9 7 6 41 41 H 1.09001 * 109.47044 * 54.20777 * 12 10 9 42 42 H 1.08997 * 109.47226 * 294.20257 * 12 10 9 43 43 H 0.97005 * 119.99678 * 180.02562 * 16 15 13 44 44 H 1.07998 * 120.00026 * 359.97438 * 22 21 10 45 45 H 1.08003 * 119.99871 * 180.27742 * 23 22 21 46 46 H 1.08000 * 119.99817 * 179.83930 * 24 23 22 47 47 H 1.07996 * 119.99953 * 180.02562 * 25 24 23 48 48 H 1.07998 * 120.00544 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8852 -0.0013 6 6 5.6099 2.8852 -0.0013 7 6 6.1121 4.3061 -0.0013 8 8 5.3240 5.2278 -0.0018 9 7 7.4372 4.5523 -0.0018 10 6 7.9263 5.9289 -0.1115 11 1 7.2816 6.5908 0.4667 12 6 7.9136 6.3592 -1.5798 13 6 8.2801 7.8176 -1.6790 14 1 8.4189 8.4018 -0.7813 15 6 8.4438 8.4046 -2.9157 16 7 8.2748 7.6932 -4.0089 17 14 8.9056 10.2104 -3.0387 18 1 10.2068 10.4359 -2.3595 19 1 9.0207 10.5957 -4.4682 20 1 7.8571 11.0350 -2.3862 21 6 9.3335 6.0061 0.4224 22 6 10.2300 4.9878 0.1575 23 6 11.5220 5.0607 0.6436 24 6 11.9148 6.1475 1.4022 25 6 11.0168 7.1634 1.6714 26 6 9.7259 7.0925 1.1817 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9564 -0.8901 34 1 3.9329 0.9289 -0.8908 35 1 3.9337 0.9287 0.8892 36 1 3.7169 3.3992 0.8888 37 1 3.7162 3.3986 -0.8912 38 1 5.9731 2.3710 -0.8911 39 1 5.9732 2.3717 0.8889 40 1 8.0670 3.8182 0.0705 41 1 6.9173 6.2059 -1.9946 42 1 8.6356 5.7642 -2.1390 43 1 8.3903 8.1061 -4.8790 44 1 9.9218 4.1367 -0.4316 45 1 12.2238 4.2673 0.4329 46 1 12.9235 6.2032 1.7841 47 1 11.3238 8.0126 2.2637 48 1 9.0244 7.8861 1.3920 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153520744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:51 Heat of formation + Delta-G solvation = -56.264880 kcal Electronic energy + Delta-G solvation = -24097.372421 eV Core-core repulsion = 20729.383586 eV Total energy + Delta-G solvation = -3367.988835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.64955 -38.53589 -36.49238 -35.07334 -33.34486 -32.77896 -31.13829 -30.43187 -29.26655 -28.46544 -25.44589 -24.18715 -22.35367 -22.13506 -21.50893 -21.06622 -20.05182 -19.44279 -17.18476 -16.50337 -16.14268 -15.87807 -15.21798 -15.11521 -14.69066 -14.50894 -14.21800 -13.84706 -13.81621 -13.54616 -12.98675 -12.88981 -12.86226 -12.53123 -12.44172 -12.30785 -12.10242 -11.54677 -11.51034 -11.45735 -11.10884 -10.99619 -10.84625 -10.80990 -10.72675 -10.67961 -10.61003 -10.51865 -9.99545 -9.91713 -9.43081 -9.06051 -8.48511 -8.46672 -8.32405 -8.00443 -5.97915 -3.99082 1.82953 1.86224 3.16529 3.35893 3.39480 3.42016 3.70915 4.28576 4.48870 4.61800 4.75581 4.87765 5.05744 5.07180 5.19449 5.26277 5.29107 5.35437 5.37682 5.40230 5.44281 5.53252 5.58135 5.59928 5.67156 5.75792 5.85851 5.88237 5.92568 5.97250 6.00190 6.02982 6.17339 6.23065 6.31793 6.40017 6.43969 6.52796 6.76111 6.85428 6.90462 6.91834 7.18469 7.44303 7.65245 7.71665 7.99894 8.08196 8.38433 8.78050 9.04801 9.63575 11.13825 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.003127 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.203455 B = 8951.372581 C =10588.703582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.104 4.104 6 C -0.140 4.140 7 C 0.508 3.492 8 O -0.537 6.537 9 N -0.727 5.727 10 C 0.180 3.820 11 H 0.084 0.916 12 C 0.026 3.974 13 C -0.511 4.511 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.047 4.047 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.135 4.135 25 C -0.121 4.121 26 C -0.099 4.099 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.391 0.609 41 H 0.024 0.976 42 H 0.022 0.978 43 H 0.260 0.740 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 -14.450 10.651 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.142 4.142 6 C -0.180 4.180 7 C 0.294 3.706 8 O -0.414 6.414 9 N -0.378 5.378 10 C 0.077 3.923 11 H 0.102 0.898 12 C -0.012 4.012 13 C -0.550 4.550 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.047 4.047 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.154 4.154 25 C -0.139 4.139 26 C -0.117 4.117 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.134 0.866 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.751 -13.760 10.438 17.674 hybrid contribution 0.786 0.723 -0.354 1.125 sum -2.965 -13.038 10.084 16.747 Atomic orbital electron populations 1.21785 0.96099 1.01350 1.01871 1.21542 0.95706 0.97193 1.01819 1.21626 0.95519 0.96425 1.02339 1.21624 0.95382 0.96867 1.01828 1.21338 0.93033 0.96145 1.03710 1.21689 0.97923 0.94583 1.03834 1.20573 0.82426 0.91361 0.76230 1.90708 1.55186 1.46440 1.49067 1.46321 1.06832 1.09777 1.74839 1.20302 0.89695 0.81319 1.00960 0.89764 1.19405 0.97854 0.96605 0.87334 1.21016 1.47035 0.94689 0.92267 0.92507 1.24945 0.95483 0.97869 0.95855 1.69956 1.49826 1.36098 0.97528 0.86681 0.79060 0.85546 0.76922 1.20224 1.21332 1.20164 1.19921 0.95959 0.94112 0.94719 1.20834 0.93666 0.99083 1.00255 1.20976 0.95912 0.98354 0.98703 1.20977 0.99067 0.95002 1.00315 1.21043 0.93812 0.98489 1.00545 1.20979 0.96344 0.97508 0.96873 0.92805 0.92721 0.93007 0.92127 0.92220 0.91982 0.91845 0.92015 0.92177 0.91353 0.91045 0.89159 0.89556 0.77529 0.95811 0.95941 0.93002 0.86697 0.86723 0.86882 0.86630 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.15 0.37 -0.75 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 4 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 5 C -0.10 -1.27 4.50 -26.73 -0.12 -1.40 16 6 C -0.14 -1.71 5.70 -27.88 -0.16 -1.87 16 7 C 0.51 8.91 7.69 -10.98 -0.08 8.82 16 8 O -0.54 -11.89 15.68 5.56 0.09 -11.80 16 9 N -0.73 -12.44 5.05 -54.93 -0.28 -12.72 16 10 C 0.18 3.76 2.19 -69.08 -0.15 3.61 16 11 H 0.08 1.92 7.49 -51.93 -0.39 1.53 16 12 C 0.03 0.67 4.68 -27.88 -0.13 0.54 16 13 C -0.51 -14.40 8.53 -34.44 -0.29 -14.69 16 14 H 0.06 1.54 6.79 -52.49 -0.36 1.19 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.05 -0.88 4.50 -104.63 -0.47 -1.35 16 22 C -0.12 -1.99 9.02 -39.59 -0.36 -2.34 16 23 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 24 C -0.14 -1.97 10.05 -39.58 -0.40 -2.36 16 25 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 26 C -0.10 -1.78 8.83 -39.58 -0.35 -2.13 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.39 5.38 6.87 -40.82 -0.28 5.10 16 41 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.12 1.70 6.95 -52.49 -0.36 1.34 16 45 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 46 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 48 H 0.12 2.15 7.84 -52.49 -0.41 1.74 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -33.21 392.79 -10.57 -43.78 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.54 Total: 4.62 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -3.48 Total: -20.40 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.46 Total: -39.17 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.21 -10.57 -43.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153520744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.485 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds