Wall clock time and date at job start Tue Mar 31 2020 08:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 C 1.53000 * 109.47508 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47264 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46829 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46586 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00208 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99469 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99717 * 175.03884 * 9 7 6 11 11 H 1.09001 * 109.47081 * 38.67413 * 10 9 7 12 12 C 1.53001 * 109.47016 * 278.67071 * 10 9 7 13 13 C 1.50701 * 109.46726 * 174.20469 * 12 10 9 14 14 H 1.08000 * 120.00052 * 354.86058 * 13 12 10 15 15 C 1.37877 * 119.99782 * 174.58567 * 13 12 10 16 16 N 1.31518 * 119.99836 * 0.27267 * 15 13 12 17 17 Si 1.86795 * 120.00105 * 180.27528 * 15 13 12 18 18 H 1.48500 * 109.47054 * 59.99830 * 17 15 13 19 19 H 1.48502 * 109.47164 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47095 * 299.99805 * 17 15 13 21 21 C 1.50700 * 109.46855 * 158.67031 * 10 9 7 22 22 C 1.38227 * 119.99988 * 39.72685 * 21 10 9 23 23 C 1.38237 * 119.99683 * 179.78655 * 22 21 10 24 24 C 1.38236 * 120.00247 * 0.44407 * 23 22 21 25 25 C 1.38236 * 119.99844 * 359.80810 * 24 23 22 26 26 C 1.38233 * 119.99580 * 220.00096 * 21 10 9 27 27 H 1.09000 * 109.47410 * 300.00154 * 1 2 3 28 28 H 1.09002 * 109.47470 * 60.00715 * 1 2 3 29 29 H 1.09003 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47410 * 239.99846 * 2 1 3 31 31 H 1.09002 * 109.47470 * 119.99285 * 2 1 3 32 32 H 1.09000 * 109.47124 * 59.99670 * 3 2 1 33 33 H 1.09007 * 109.47022 * 299.99688 * 3 2 1 34 34 H 1.09000 * 109.47308 * 59.99648 * 4 3 2 35 35 H 1.09004 * 109.47108 * 299.99887 * 4 3 2 36 36 H 1.09003 * 109.46953 * 60.00287 * 5 4 3 37 37 H 1.08993 * 109.46936 * 299.99787 * 5 4 3 38 38 H 1.08996 * 109.46645 * 60.00237 * 6 5 4 39 39 H 1.08998 * 109.46817 * 300.00186 * 6 5 4 40 40 H 0.96995 * 120.00341 * 355.03350 * 9 7 6 41 41 H 1.09001 * 109.47044 * 54.20777 * 12 10 9 42 42 H 1.08997 * 109.47226 * 294.20257 * 12 10 9 43 43 H 0.97005 * 119.99678 * 180.02562 * 16 15 13 44 44 H 1.07998 * 120.00026 * 359.97438 * 22 21 10 45 45 H 1.08003 * 119.99871 * 180.27742 * 23 22 21 46 46 H 1.08000 * 119.99817 * 179.83930 * 24 23 22 47 47 H 1.07996 * 119.99953 * 180.02562 * 25 24 23 48 48 H 1.07998 * 120.00544 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8852 -0.0013 6 6 5.6099 2.8852 -0.0013 7 6 6.1121 4.3061 -0.0013 8 8 5.3240 5.2278 -0.0018 9 7 7.4372 4.5523 -0.0018 10 6 7.9263 5.9289 -0.1115 11 1 7.2816 6.5908 0.4667 12 6 7.9136 6.3592 -1.5798 13 6 8.2801 7.8176 -1.6790 14 1 8.4189 8.4018 -0.7813 15 6 8.4438 8.4046 -2.9157 16 7 8.2748 7.6932 -4.0089 17 14 8.9056 10.2104 -3.0387 18 1 10.2068 10.4359 -2.3595 19 1 9.0207 10.5957 -4.4682 20 1 7.8571 11.0350 -2.3862 21 6 9.3335 6.0061 0.4224 22 6 10.2300 4.9878 0.1575 23 6 11.5220 5.0607 0.6436 24 6 11.9148 6.1475 1.4022 25 6 11.0168 7.1634 1.6714 26 6 9.7259 7.0925 1.1817 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9564 -0.8901 34 1 3.9329 0.9289 -0.8908 35 1 3.9337 0.9287 0.8892 36 1 3.7169 3.3992 0.8888 37 1 3.7162 3.3986 -0.8912 38 1 5.9731 2.3710 -0.8911 39 1 5.9732 2.3717 0.8889 40 1 8.0670 3.8182 0.0705 41 1 6.9173 6.2059 -1.9946 42 1 8.6356 5.7642 -2.1390 43 1 8.3903 8.1061 -4.8790 44 1 9.9218 4.1367 -0.4316 45 1 12.2238 4.2673 0.4329 46 1 12.9235 6.2032 1.7841 47 1 11.3238 8.0126 2.2637 48 1 9.0244 7.8861 1.3920 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153520744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:50 Heat of formation + Delta-G solvation = -74.573334 kcal Electronic energy + Delta-G solvation = -24098.166335 eV Core-core repulsion = 20729.383586 eV Total energy + Delta-G solvation = -3368.782749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10540 -39.85692 -37.34899 -36.62431 -34.87207 -34.26003 -32.62362 -31.67080 -30.46058 -29.96976 -26.95550 -25.46372 -23.94915 -23.53157 -22.43163 -21.82810 -21.35912 -20.98184 -18.74848 -18.30393 -17.27587 -17.06431 -16.71222 -16.60985 -16.08318 -15.93562 -15.40876 -14.95977 -14.91835 -14.65314 -14.49095 -14.23209 -14.15035 -13.93549 -13.73848 -13.44540 -13.19430 -13.14223 -12.93326 -12.68678 -12.54544 -12.31191 -12.28198 -11.97929 -11.87462 -11.77900 -11.64387 -11.59242 -11.46928 -11.40016 -11.31620 -10.75344 -10.57661 -9.99134 -9.70571 -9.44785 -8.21384 -6.30127 0.55475 0.60822 1.35551 1.39285 1.46219 1.74462 2.30211 2.44259 3.00649 3.13133 3.78244 3.84800 3.88847 4.02320 4.05509 4.23507 4.24498 4.25235 4.35210 4.37500 4.49510 4.58495 4.62426 4.73200 4.74098 4.82411 4.82885 4.86050 4.91728 5.00785 5.11685 5.14703 5.15626 5.23032 5.25208 5.28873 5.31935 5.43267 5.46780 5.51003 5.55007 5.57269 5.65788 5.69217 5.73766 5.90751 6.19798 6.22977 6.68017 6.81758 7.36533 7.40083 8.90964 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.003127 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.203455 B = 8951.372581 C =10588.703582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.124 4.124 4 C -0.110 4.110 5 C -0.103 4.103 6 C -0.128 4.128 7 C 0.498 3.502 8 O -0.593 6.593 9 N -0.716 5.716 10 C 0.197 3.803 11 H 0.054 0.946 12 C 0.041 3.959 13 C -0.525 4.525 14 H 0.061 0.939 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.958 3.042 18 H -0.263 1.263 19 H -0.282 1.282 20 H -0.271 1.271 21 C -0.074 4.074 22 C -0.129 4.129 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.123 4.123 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.410 0.590 41 H -0.024 1.024 42 H 0.003 0.997 43 H 0.262 0.738 44 H 0.127 0.873 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.141 0.859 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -15.901 12.013 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.167 4.167 7 C 0.286 3.714 8 O -0.473 6.473 9 N -0.368 5.368 10 C 0.092 3.908 11 H 0.072 0.928 12 C 0.003 3.997 13 C -0.563 4.563 14 H 0.079 0.921 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.783 3.217 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.196 1.196 21 C -0.075 4.075 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.142 4.142 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.247 0.753 41 H -0.005 1.005 42 H 0.021 0.979 43 H 0.071 0.929 44 H 0.145 0.855 45 H 0.168 0.832 46 H 0.168 0.832 47 H 0.159 0.841 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.352 -15.251 11.819 19.342 hybrid contribution 0.064 1.158 -0.750 1.381 sum -1.288 -14.092 11.070 17.966 Atomic orbital electron populations 1.21801 0.95890 1.01945 1.01639 1.21518 0.95924 0.96067 1.02428 1.21634 0.95521 0.97390 1.01572 1.21560 0.95362 0.94619 1.03180 1.21310 0.93185 0.97913 1.01664 1.21741 0.97623 0.90776 1.06582 1.21681 0.81908 0.93245 0.74526 1.90680 1.56461 1.48723 1.51449 1.46177 1.07426 1.08972 1.74258 1.19687 0.91369 0.82758 0.96975 0.92758 1.19146 0.94175 0.95887 0.90528 1.21399 1.46502 0.95865 0.92556 0.92121 1.25877 0.95427 1.02725 0.95487 1.70093 1.50988 1.38174 0.98070 0.85601 0.79257 0.79684 0.77194 1.18760 1.20740 1.19617 1.19786 0.94896 0.95959 0.96809 1.21056 0.94367 0.98811 1.00487 1.21408 0.95403 0.99319 0.97491 1.21462 1.00370 0.93903 0.98941 1.21365 0.92751 0.99822 1.00230 1.21078 0.97709 0.97279 0.98142 0.92866 0.93203 0.91983 0.91756 0.91292 0.92431 0.93096 0.91073 0.90228 0.92770 0.93962 0.87021 0.85715 0.75262 1.00538 0.97889 0.92891 0.85504 0.83218 0.83180 0.84142 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.73 5.93 30.59 0.18 -1.55 16 3 C -0.12 -2.18 5.21 30.59 0.16 -2.02 16 4 C -0.11 -1.90 5.21 30.59 0.16 -1.74 16 5 C -0.10 -2.54 4.50 30.60 0.14 -2.40 16 6 C -0.13 -3.00 5.70 29.85 0.17 -2.83 16 7 C 0.50 18.13 7.69 87.66 0.67 18.80 16 8 O -0.59 -28.17 15.68 -3.03 -0.05 -28.22 16 9 N -0.72 -25.27 5.05 -446.08 -2.25 -27.52 16 10 C 0.20 8.67 2.19 44.25 0.10 8.77 16 11 H 0.05 2.68 7.49 -2.39 -0.02 2.66 16 12 C 0.04 2.24 4.68 29.85 0.14 2.38 16 13 C -0.52 -30.76 8.53 25.60 0.22 -30.54 16 14 H 0.06 3.42 6.79 -2.91 -0.02 3.40 16 15 C 0.00 0.15 5.46 84.65 0.46 0.61 16 16 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 17 Si 0.96 45.93 29.54 68.60 2.03 47.95 16 18 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 C -0.07 -2.82 4.50 -19.87 -0.09 -2.91 16 22 C -0.13 -4.09 9.02 22.27 0.20 -3.89 16 23 C -0.12 -3.09 10.05 22.27 0.22 -2.86 16 24 C -0.13 -3.25 10.05 22.27 0.22 -3.02 16 25 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 26 C -0.12 -4.48 8.83 22.27 0.20 -4.28 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 37 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.41 11.06 6.87 -92.71 -0.64 10.42 16 41 H -0.02 -1.51 8.08 -2.39 -0.02 -1.52 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 44 H 0.13 3.57 6.95 -2.91 -0.02 3.55 16 45 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 46 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 47 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 48 H 0.11 4.04 7.84 -2.91 -0.02 4.02 16 Total: -1.00 -77.24 392.79 4.38 -72.87 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.27 Total: 25.38 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 4.09 Total: -32.27 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -1.97 Total: -85.71 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.05 Total: -28.22 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -77.24 4.38 -72.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153520744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.708 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds