Wall clock time and date at job start Tue Mar 31 2020 08:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46985 * 2 1 4 4 C 1.52997 * 109.47220 * 239.99896 * 2 1 3 5 5 C 1.52994 * 109.47120 * 119.99562 * 2 1 3 6 6 C 1.52996 * 109.47118 * 59.99950 * 5 2 1 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 2 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09001 * 109.46948 * 35.00281 * 10 9 7 12 12 C 1.52999 * 109.47481 * 154.99940 * 10 9 7 13 13 C 1.50698 * 109.47141 * 295.00678 * 12 10 9 14 14 H 1.07994 * 120.00042 * 359.97438 * 13 12 10 15 15 C 1.37877 * 119.99710 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00499 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00045 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47105 * 90.00059 * 17 15 13 19 19 H 1.48498 * 109.47057 * 210.00456 * 17 15 13 20 20 H 1.48503 * 109.46745 * 330.00438 * 17 15 13 21 21 C 1.50700 * 109.47514 * 275.00337 * 10 9 7 22 22 C 1.38235 * 119.99909 * 319.72923 * 21 10 9 23 23 C 1.38235 * 120.00203 * 179.78500 * 22 21 10 24 24 C 1.38243 * 119.99736 * 0.43880 * 23 22 21 25 25 C 1.38244 * 119.99802 * 359.81374 * 24 23 22 26 26 C 1.38234 * 120.00041 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47131 * 300.00422 * 1 2 3 28 28 H 1.09003 * 109.47049 * 60.00203 * 1 2 3 29 29 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47073 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47061 * 299.99790 * 3 2 1 32 32 H 1.08990 * 109.47421 * 59.99733 * 3 2 1 33 33 H 1.09001 * 109.46788 * 299.99941 * 4 2 1 34 34 H 1.08994 * 109.47320 * 59.99753 * 4 2 1 35 35 H 1.08994 * 109.47192 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47131 * 300.00015 * 5 2 1 37 37 H 1.09000 * 109.47504 * 180.02562 * 5 2 1 38 38 H 1.09004 * 109.47066 * 60.00025 * 6 5 2 39 39 H 1.08994 * 109.47405 * 299.99855 * 6 5 2 40 40 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 41 41 H 1.09006 * 109.46798 * 55.00299 * 12 10 9 42 42 H 1.08995 * 109.47322 * 174.99759 * 12 10 9 43 43 H 0.96993 * 120.00753 * 179.97438 * 16 15 13 44 44 H 1.08003 * 119.99755 * 359.97438 * 22 21 10 45 45 H 1.07999 * 120.00430 * 180.26737 * 23 22 21 46 46 H 1.07994 * 120.00105 * 179.82908 * 24 23 22 47 47 H 1.07997 * 119.99648 * 180.02562 * 25 24 23 48 48 H 1.07994 * 119.99956 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2492 6 6 1.5300 -2.1636 1.2494 7 6 2.0328 -2.8741 2.4796 8 8 2.7301 -2.2847 3.2779 9 7 1.7027 -4.1628 2.6957 10 6 2.1865 -4.8518 3.8946 11 1 2.2238 -4.1493 4.7272 12 6 1.2382 -6.0017 4.2398 13 6 -0.1104 -5.4448 4.6168 14 1 -0.2745 -4.3774 4.6113 15 6 -1.1346 -6.2980 4.9689 16 7 -0.9347 -7.5978 4.9762 17 14 -2.8061 -5.6076 5.4370 18 1 -3.6523 -5.4931 4.2220 19 1 -3.4611 -6.5155 6.4127 20 1 -2.6336 -4.2653 6.0483 21 6 3.5668 -5.3991 3.6370 22 6 3.8658 -5.9733 2.4157 23 6 5.1332 -6.4714 2.1777 24 6 6.0990 -6.4033 3.1645 25 6 5.7985 -5.8337 4.3877 26 6 4.5323 -5.3318 4.6240 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.6766 -0.2072 2.1392 37 1 3.1300 -0.7208 1.2495 38 1 1.8933 -2.6775 0.3594 39 1 0.4400 -2.1636 1.2494 40 1 1.1449 -4.6342 2.0574 41 1 1.1319 -6.6569 3.3751 42 1 1.6443 -6.5687 5.0774 43 1 -1.6551 -8.1980 5.2242 44 1 3.1100 -6.0301 1.6462 45 1 5.3680 -6.9161 1.2220 46 1 7.0884 -6.7949 2.9796 47 1 6.5531 -5.7802 5.1584 48 1 4.2977 -4.8865 5.5795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153570691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:54 Heat of formation + Delta-G solvation = -51.282690 kcal Electronic energy + Delta-G solvation = -25008.476397 eV Core-core repulsion = 21640.703607 eV Total energy + Delta-G solvation = -3367.772791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.70583 -38.64978 -37.52514 -35.12961 -32.72641 -31.59298 -30.56064 -30.30429 -28.73547 -27.37904 -27.35280 -25.26326 -23.90614 -22.27771 -21.93179 -20.22351 -19.61764 -18.56967 -17.00562 -16.50853 -16.15376 -15.52498 -15.31070 -14.77468 -14.62585 -14.37617 -14.27869 -14.26673 -13.69965 -13.30668 -12.98206 -12.91204 -12.61019 -12.51373 -12.41573 -12.10580 -11.90799 -11.83591 -11.73457 -11.53355 -11.14077 -11.10738 -10.92628 -10.73092 -10.60367 -10.57049 -10.55667 -10.47528 -10.43584 -9.77037 -9.34725 -9.20843 -8.53312 -8.45613 -8.36255 -8.16215 -6.09270 -4.12675 1.79737 1.81697 3.21153 3.26167 3.33835 3.37875 3.80838 4.25897 4.39612 4.72169 4.74524 4.76972 5.23122 5.26507 5.28467 5.28532 5.29337 5.36427 5.40413 5.50934 5.55532 5.56933 5.61444 5.69851 5.74300 5.84765 5.85240 5.92404 5.95749 5.98322 6.03855 6.13673 6.20137 6.25635 6.37539 6.39188 6.43196 6.46472 6.60499 6.85981 6.86800 6.97261 7.13772 7.42103 7.49970 7.64299 7.87555 8.19678 8.26960 8.85351 8.93298 9.52340 11.01300 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008222 B = 0.005221 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3404.755899 B = 5361.419754 C = 8090.240908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.090 4.090 6 C -0.145 4.145 7 C 0.508 3.492 8 O -0.553 6.553 9 N -0.703 5.703 10 C 0.183 3.817 11 H 0.085 0.915 12 C 0.024 3.976 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.069 4.069 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.136 4.136 25 C -0.123 4.123 26 C -0.109 4.109 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.400 0.600 41 H 0.024 0.976 42 H 0.033 0.967 43 H 0.262 0.738 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.740 9.362 -11.123 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.201 4.201 5 C -0.128 4.128 6 C -0.185 4.185 7 C 0.294 3.706 8 O -0.432 6.432 9 N -0.352 5.352 10 C 0.079 3.921 11 H 0.103 0.897 12 C -0.013 4.013 13 C -0.557 4.557 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.071 4.071 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.154 4.154 25 C -0.141 4.141 26 C -0.127 4.127 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.234 0.766 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.134 0.866 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.134 9.605 -10.498 16.390 hybrid contribution -1.272 -0.117 -0.005 1.278 sum 6.862 9.489 -10.504 15.731 Atomic orbital electron populations 1.21956 0.94657 1.02115 1.01542 1.20586 0.95685 0.95442 0.95472 1.21849 1.00955 0.95426 1.01498 1.21942 1.00985 1.00449 0.96766 1.21350 1.01079 0.93307 0.97020 1.21810 1.02767 0.97005 0.96891 1.20639 0.80259 0.82115 0.87541 1.90646 1.38797 1.66244 1.47496 1.46009 1.52144 1.11674 1.25327 1.20218 0.89001 0.95894 0.86992 0.89665 1.19386 0.92770 0.91458 0.97735 1.21132 0.95424 0.93160 1.46033 0.92410 1.24985 0.98895 0.94786 0.95452 1.69955 1.32833 1.02000 1.48319 0.86605 0.84120 0.78997 0.78378 1.20672 1.21214 1.19857 1.20567 0.96418 0.96394 0.93694 1.20904 0.96294 0.98359 0.97089 1.21040 0.93769 1.00614 0.98917 1.20992 0.99001 1.01265 0.94132 1.21041 0.96629 0.99340 0.97080 1.21022 0.92873 0.99632 0.99200 0.92589 0.92979 0.92153 0.92719 0.92915 0.92646 0.92263 0.92967 0.92712 0.91283 0.91423 0.89252 0.88859 0.76570 0.95779 0.94862 0.92874 0.86591 0.86769 0.86870 0.86638 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.12 37.16 0.30 -1.08 16 2 C -0.07 -0.71 0.80 -154.51 -0.12 -0.83 16 3 C -0.14 -1.28 8.47 37.16 0.31 -0.97 16 4 C -0.14 -1.29 8.12 37.16 0.30 -0.99 16 5 C -0.09 -1.11 3.56 -26.74 -0.10 -1.21 16 6 C -0.14 -1.87 4.99 -27.88 -0.14 -2.01 16 7 C 0.51 8.88 7.79 -10.98 -0.09 8.80 16 8 O -0.55 -11.63 15.64 5.55 0.09 -11.55 16 9 N -0.70 -12.61 4.04 -54.93 -0.22 -12.83 16 10 C 0.18 3.76 2.11 -69.08 -0.15 3.62 16 11 H 0.09 1.93 7.44 -51.93 -0.39 1.55 16 12 C 0.02 0.57 4.49 -27.88 -0.13 0.45 16 13 C -0.52 -13.74 8.84 -34.44 -0.30 -14.04 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 17 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.07 -1.31 4.91 -104.62 -0.51 -1.82 16 22 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 23 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 24 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 26 C -0.11 -1.93 9.67 -39.58 -0.38 -2.31 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 37 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.09 0.98 6.43 -51.93 -0.33 0.65 16 39 H 0.09 1.12 6.43 -51.93 -0.33 0.79 16 40 H 0.40 6.54 8.60 -40.82 -0.35 6.19 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.12 1.83 7.73 -52.48 -0.41 1.42 16 45 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -30.72 387.85 -9.59 -40.31 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.36 Total: 7.05 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -2.66 Total: -19.96 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.51 Total: -37.68 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.72 -9.59 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153570691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.971 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds