Wall clock time and date at job start Tue Mar 31 2020 08:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46985 * 2 1 4 4 C 1.52997 * 109.47220 * 239.99896 * 2 1 3 5 5 C 1.52994 * 109.47120 * 119.99562 * 2 1 3 6 6 C 1.52996 * 109.47118 * 59.99950 * 5 2 1 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 2 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09001 * 109.46948 * 35.00281 * 10 9 7 12 12 C 1.52999 * 109.47481 * 154.99940 * 10 9 7 13 13 C 1.50698 * 109.47141 * 295.00678 * 12 10 9 14 14 H 1.07994 * 120.00042 * 359.97438 * 13 12 10 15 15 C 1.37877 * 119.99710 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00499 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00045 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47105 * 90.00059 * 17 15 13 19 19 H 1.48498 * 109.47057 * 210.00456 * 17 15 13 20 20 H 1.48503 * 109.46745 * 330.00438 * 17 15 13 21 21 C 1.50700 * 109.47514 * 275.00337 * 10 9 7 22 22 C 1.38235 * 119.99909 * 319.72923 * 21 10 9 23 23 C 1.38235 * 120.00203 * 179.78500 * 22 21 10 24 24 C 1.38243 * 119.99736 * 0.43880 * 23 22 21 25 25 C 1.38244 * 119.99802 * 359.81374 * 24 23 22 26 26 C 1.38234 * 120.00041 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47131 * 300.00422 * 1 2 3 28 28 H 1.09003 * 109.47049 * 60.00203 * 1 2 3 29 29 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47073 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47061 * 299.99790 * 3 2 1 32 32 H 1.08990 * 109.47421 * 59.99733 * 3 2 1 33 33 H 1.09001 * 109.46788 * 299.99941 * 4 2 1 34 34 H 1.08994 * 109.47320 * 59.99753 * 4 2 1 35 35 H 1.08994 * 109.47192 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47131 * 300.00015 * 5 2 1 37 37 H 1.09000 * 109.47504 * 180.02562 * 5 2 1 38 38 H 1.09004 * 109.47066 * 60.00025 * 6 5 2 39 39 H 1.08994 * 109.47405 * 299.99855 * 6 5 2 40 40 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 41 41 H 1.09006 * 109.46798 * 55.00299 * 12 10 9 42 42 H 1.08995 * 109.47322 * 174.99759 * 12 10 9 43 43 H 0.96993 * 120.00753 * 179.97438 * 16 15 13 44 44 H 1.08003 * 119.99755 * 359.97438 * 22 21 10 45 45 H 1.07999 * 120.00430 * 180.26737 * 23 22 21 46 46 H 1.07994 * 120.00105 * 179.82908 * 24 23 22 47 47 H 1.07997 * 119.99648 * 180.02562 * 25 24 23 48 48 H 1.07994 * 119.99956 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2492 6 6 1.5300 -2.1636 1.2494 7 6 2.0328 -2.8741 2.4796 8 8 2.7301 -2.2847 3.2779 9 7 1.7027 -4.1628 2.6957 10 6 2.1865 -4.8518 3.8946 11 1 2.2238 -4.1493 4.7272 12 6 1.2382 -6.0017 4.2398 13 6 -0.1104 -5.4448 4.6168 14 1 -0.2745 -4.3774 4.6113 15 6 -1.1346 -6.2980 4.9689 16 7 -0.9347 -7.5978 4.9762 17 14 -2.8061 -5.6076 5.4370 18 1 -3.6523 -5.4931 4.2220 19 1 -3.4611 -6.5155 6.4127 20 1 -2.6336 -4.2653 6.0483 21 6 3.5668 -5.3991 3.6370 22 6 3.8658 -5.9733 2.4157 23 6 5.1332 -6.4714 2.1777 24 6 6.0990 -6.4033 3.1645 25 6 5.7985 -5.8337 4.3877 26 6 4.5323 -5.3318 4.6240 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.6766 -0.2072 2.1392 37 1 3.1300 -0.7208 1.2495 38 1 1.8933 -2.6775 0.3594 39 1 0.4400 -2.1636 1.2494 40 1 1.1449 -4.6342 2.0574 41 1 1.1319 -6.6569 3.3751 42 1 1.6443 -6.5687 5.0774 43 1 -1.6551 -8.1980 5.2242 44 1 3.1100 -6.0301 1.6462 45 1 5.3680 -6.9161 1.2220 46 1 7.0884 -6.7949 2.9796 47 1 6.5531 -5.7802 5.1584 48 1 4.2977 -4.8865 5.5795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153570691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:53 Heat of formation + Delta-G solvation = -66.740301 kcal Electronic energy + Delta-G solvation = -25009.146690 eV Core-core repulsion = 21640.703607 eV Total energy + Delta-G solvation = -3368.443083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11384 -39.87554 -38.52938 -36.74651 -34.71505 -32.95254 -31.77452 -31.49805 -30.50064 -28.09813 -28.08107 -26.92846 -25.18487 -23.78928 -23.34502 -21.65269 -21.07745 -19.42456 -18.71161 -17.98550 -17.66381 -16.99566 -16.55611 -16.45079 -16.02423 -15.52959 -15.30275 -15.21599 -14.85019 -14.58309 -14.32725 -14.19985 -14.05211 -13.88520 -13.68929 -13.46715 -13.30617 -12.93723 -12.69214 -12.66729 -12.59457 -12.50491 -12.47123 -12.15113 -11.97237 -11.87914 -11.60184 -11.44429 -11.38169 -11.37502 -11.32722 -10.77069 -10.55557 -9.93720 -9.75764 -9.51803 -8.20813 -6.31201 0.51129 0.55517 1.38586 1.40749 1.50964 1.80281 2.39430 2.41954 2.97775 3.13440 3.78595 3.86248 3.94524 3.99634 4.03253 4.17032 4.21063 4.31554 4.34056 4.43319 4.49698 4.65794 4.67992 4.70834 4.76969 4.78816 4.83991 4.89011 4.97447 5.08871 5.10769 5.12618 5.15218 5.19829 5.21808 5.28780 5.31421 5.42147 5.43286 5.57224 5.58622 5.60883 5.62731 5.64204 5.77406 5.92376 6.15702 6.20269 6.76685 6.81382 7.37614 7.43439 8.89970 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008222 B = 0.005221 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3404.755899 B = 5361.419754 C = 8090.240908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.085 4.085 6 C -0.134 4.134 7 C 0.504 3.496 8 O -0.593 6.593 9 N -0.699 5.699 10 C 0.199 3.801 11 H 0.053 0.947 12 C 0.038 3.962 13 C -0.529 4.529 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.097 4.097 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.136 4.136 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.408 0.592 41 H 0.013 0.987 42 H 0.001 0.999 43 H 0.264 0.736 44 H 0.122 0.878 45 H 0.148 0.852 46 H 0.152 0.848 47 H 0.143 0.857 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.101 9.635 -13.363 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.067 4.067 3 C -0.197 4.197 4 C -0.201 4.201 5 C -0.123 4.123 6 C -0.173 4.173 7 C 0.292 3.708 8 O -0.475 6.475 9 N -0.348 5.348 10 C 0.094 3.906 11 H 0.071 0.929 12 C 0.001 3.999 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.566 5.566 17 Si 0.782 3.218 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.098 4.098 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.148 4.148 25 C -0.142 4.142 26 C -0.154 4.154 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.244 0.756 41 H 0.031 0.969 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.166 0.834 46 H 0.169 0.831 47 H 0.161 0.839 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.487 9.882 -12.762 18.235 hybrid contribution -1.295 -0.221 0.719 1.498 sum 7.191 9.661 -12.043 17.032 Atomic orbital electron populations 1.21966 0.94158 1.02297 1.01908 1.20550 0.96019 0.95629 0.94510 1.21853 1.00902 0.95031 1.01961 1.21940 1.00931 1.00653 0.96541 1.21305 1.00186 0.93095 0.97718 1.21842 1.03445 0.96822 0.95194 1.21469 0.79355 0.81537 0.88420 1.90625 1.40653 1.66920 1.49264 1.45935 1.52267 1.12106 1.24531 1.19682 0.89852 0.93872 0.87240 0.92907 1.19125 0.92756 0.92152 0.95878 1.21381 0.96538 0.92932 1.45861 0.92928 1.25774 1.02583 0.95004 0.95334 1.70067 1.34055 1.03208 1.49268 0.85582 0.79754 0.78078 0.78430 1.19232 1.20964 1.19819 1.20460 0.95558 0.98483 0.95320 1.21078 0.97784 0.98657 0.96406 1.21452 0.92723 0.99474 1.00497 1.21475 1.00510 0.99642 0.93133 1.21382 0.95917 0.98387 0.98506 1.21172 0.94339 1.01021 0.98897 0.93380 0.91508 0.92053 0.92870 0.91391 0.93250 0.91885 0.91602 0.92872 0.93397 0.92784 0.86568 0.87437 0.75591 0.96882 0.98108 0.92700 0.85961 0.83444 0.83069 0.83943 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.12 71.98 0.58 -1.92 16 2 C -0.07 -1.22 0.80 -52.18 -0.04 -1.26 16 3 C -0.14 -2.37 8.47 71.98 0.61 -1.76 16 4 C -0.14 -2.21 8.12 71.98 0.58 -1.63 16 5 C -0.08 -2.09 3.56 30.59 0.11 -1.98 16 6 C -0.13 -3.33 4.99 29.85 0.15 -3.18 16 7 C 0.50 17.96 7.79 87.66 0.68 18.65 16 8 O -0.59 -26.04 15.64 -3.04 -0.05 -26.08 16 9 N -0.70 -25.80 4.04 -446.09 -1.80 -27.60 16 10 C 0.20 8.64 2.11 44.25 0.09 8.73 16 11 H 0.05 2.60 7.44 -2.39 -0.02 2.58 16 12 C 0.04 1.94 4.49 29.85 0.13 2.08 16 13 C -0.53 -28.88 8.84 25.60 0.23 -28.65 16 14 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 15 C 0.01 0.65 5.46 84.65 0.46 1.11 16 16 N -0.93 -54.13 13.29 21.45 0.28 -53.85 16 17 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 C -0.10 -3.78 4.91 -19.87 -0.10 -3.88 16 22 C -0.12 -4.05 9.32 22.27 0.21 -3.84 16 23 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 24 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 25 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 26 C -0.14 -4.98 9.67 22.27 0.22 -4.77 16 27 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.03 6.43 -2.39 -0.02 1.01 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.92 6.43 -2.39 -0.02 0.90 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 37 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 38 H 0.12 2.30 6.43 -2.38 -0.02 2.28 16 39 H 0.11 2.42 6.43 -2.39 -0.02 2.40 16 40 H 0.41 13.50 8.60 -92.71 -0.80 12.70 16 41 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.12 3.80 7.73 -2.91 -0.02 3.78 16 45 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 46 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 47 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 48 H 0.11 4.06 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -68.71 387.85 5.17 -63.54 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.12 Total: 30.62 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 4.59 Total: -32.03 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.52 Total: -81.45 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.71 5.17 -63.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153570691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.204 kcal (2) G-P(sol) polarization free energy of solvation -68.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds