Wall clock time and date at job start Tue Mar 31 2020 08:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 C 1.53002 * 109.46950 * 240.00308 * 2 1 3 5 5 C 1.53002 * 109.47325 * 120.00234 * 2 1 3 6 6 C 1.53006 * 109.46829 * 59.99719 * 5 2 1 7 7 C 1.50702 * 109.46586 * 180.02562 * 6 5 2 8 8 O 1.21280 * 120.00208 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99469 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99717 * 175.03884 * 9 7 6 11 11 H 1.09001 * 109.47081 * 38.67413 * 10 9 7 12 12 C 1.53001 * 109.47016 * 278.67071 * 10 9 7 13 13 C 1.50701 * 109.46726 * 174.20469 * 12 10 9 14 14 H 1.08000 * 120.00052 * 354.86058 * 13 12 10 15 15 C 1.37877 * 119.99782 * 174.58567 * 13 12 10 16 16 N 1.31518 * 119.99836 * 0.27267 * 15 13 12 17 17 Si 1.86795 * 120.00105 * 180.27528 * 15 13 12 18 18 H 1.48503 * 109.47286 * 89.99708 * 17 15 13 19 19 H 1.48495 * 109.47263 * 209.99651 * 17 15 13 20 20 H 1.48501 * 109.47161 * 330.00038 * 17 15 13 21 21 C 1.50700 * 109.46855 * 158.67031 * 10 9 7 22 22 C 1.38227 * 119.99988 * 39.72685 * 21 10 9 23 23 C 1.38237 * 119.99683 * 179.78655 * 22 21 10 24 24 C 1.38236 * 120.00247 * 0.44407 * 23 22 21 25 25 C 1.38236 * 119.99844 * 359.80810 * 24 23 22 26 26 C 1.38233 * 119.99580 * 220.00096 * 21 10 9 27 27 H 1.09000 * 109.46818 * 299.99977 * 1 2 3 28 28 H 1.09003 * 109.47198 * 59.99393 * 1 2 3 29 29 H 1.09001 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46615 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47274 * 300.00008 * 3 2 1 32 32 H 1.09000 * 109.47308 * 60.00323 * 3 2 1 33 33 H 1.09001 * 109.47111 * 299.99974 * 4 2 1 34 34 H 1.08999 * 109.47377 * 59.99970 * 4 2 1 35 35 H 1.08995 * 109.46967 * 180.02562 * 4 2 1 36 36 H 1.09003 * 109.46953 * 300.00203 * 5 2 1 37 37 H 1.08993 * 109.46936 * 179.97438 * 5 2 1 38 38 H 1.08996 * 109.46645 * 60.00237 * 6 5 2 39 39 H 1.08998 * 109.46817 * 300.00186 * 6 5 2 40 40 H 0.96995 * 120.00341 * 355.03350 * 9 7 6 41 41 H 1.09001 * 109.47044 * 54.20777 * 12 10 9 42 42 H 1.08997 * 109.47226 * 294.20257 * 12 10 9 43 43 H 0.97005 * 119.99678 * 180.02562 * 16 15 13 44 44 H 1.07998 * 120.00026 * 359.97438 * 22 21 10 45 45 H 1.08003 * 119.99871 * 180.27742 * 23 22 21 46 46 H 1.08000 * 119.99817 * 179.83930 * 24 23 22 47 47 H 1.07996 * 119.99953 * 180.02562 * 25 24 23 48 48 H 1.07998 * 120.00544 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2491 7 6 2.0319 -2.8741 2.4799 8 8 2.7292 -2.2847 3.2782 9 7 1.7066 -4.1646 2.6929 10 6 2.2816 -4.8867 3.8305 11 1 2.3361 -4.2221 4.6928 12 6 3.6876 -5.3703 3.4696 13 6 4.3334 -5.9875 4.6833 14 1 3.8292 -5.9565 5.6378 15 6 5.5654 -6.5968 4.5738 16 7 6.1793 -6.6346 3.4113 17 14 6.3625 -7.3686 6.0765 18 1 5.9459 -8.7900 6.1828 19 1 7.8399 -7.2942 5.9464 20 1 5.9353 -6.6352 7.2951 21 6 1.4128 -6.0720 4.1640 22 6 0.8505 -6.8240 3.1496 23 6 0.0572 -7.9140 3.4556 24 6 -0.1813 -8.2464 4.7760 25 6 0.3767 -7.4912 5.7905 26 6 1.1736 -6.4038 5.4845 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1299 -0.7216 -1.2491 36 1 1.6767 -0.2075 2.1392 37 1 3.1300 -0.7217 1.2489 38 1 1.8933 -2.6775 0.3591 39 1 0.4400 -2.1637 1.2491 40 1 1.0917 -4.6151 2.0931 41 1 4.2863 -4.5253 3.1295 42 1 3.6233 -6.1134 2.6748 43 1 7.0459 -7.0636 3.3343 44 1 1.0335 -6.5619 2.1180 45 1 -0.3785 -8.5042 2.6630 46 1 -0.8033 -9.0964 5.0150 47 1 0.1907 -7.7511 6.8221 48 1 1.6096 -5.8139 6.2771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153570798.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:56 Heat of formation + Delta-G solvation = -46.941343 kcal Electronic energy + Delta-G solvation = -24869.158436 eV Core-core repulsion = 21501.573900 eV Total energy + Delta-G solvation = -3367.584536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.72881 -38.71223 -37.56134 -35.03556 -32.80729 -31.54665 -30.58863 -30.30534 -28.54879 -27.39760 -27.35903 -25.33451 -23.75568 -22.34251 -22.06582 -20.27222 -19.44820 -18.58625 -17.26902 -16.54789 -15.94517 -15.40483 -15.20983 -14.78047 -14.57850 -14.37725 -14.27995 -14.23013 -13.71327 -13.25210 -13.04707 -12.90577 -12.68657 -12.53467 -12.38796 -12.14003 -11.93680 -11.80109 -11.74931 -11.49922 -11.17901 -11.07406 -10.84328 -10.71960 -10.64326 -10.57259 -10.57031 -10.48809 -9.98926 -9.91686 -9.41602 -9.04554 -8.48050 -8.46650 -8.32527 -8.00137 -5.97913 -3.98977 1.83027 1.86250 3.17670 3.34289 3.40225 3.43518 3.72101 4.28760 4.49234 4.70149 4.72152 4.76257 5.18706 5.24523 5.27445 5.29374 5.33809 5.38088 5.40527 5.49037 5.53307 5.54355 5.57863 5.68919 5.69700 5.82463 5.83581 5.92714 5.96932 6.00129 6.02786 6.12880 6.21112 6.25627 6.37501 6.40287 6.43548 6.53042 6.76488 6.85597 6.90668 6.92201 7.18760 7.44368 7.65573 7.72135 8.00106 8.08923 8.38655 8.79133 9.05148 9.63801 11.13853 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.003929 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.667126 B = 7124.671120 C = 8692.229721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.092 4.092 6 C -0.144 4.144 7 C 0.508 3.492 8 O -0.538 6.538 9 N -0.727 5.727 10 C 0.180 3.820 11 H 0.084 0.916 12 C 0.025 3.975 13 C -0.511 4.511 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.046 4.046 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.136 4.136 25 C -0.121 4.121 26 C -0.099 4.099 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.390 0.610 41 H 0.024 0.976 42 H 0.022 0.978 43 H 0.260 0.740 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.828 6.993 -6.937 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.130 4.130 6 C -0.184 4.184 7 C 0.294 3.706 8 O -0.414 6.414 9 N -0.378 5.378 10 C 0.077 3.923 11 H 0.102 0.898 12 C -0.012 4.012 13 C -0.550 4.550 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.046 4.046 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.154 4.154 25 C -0.139 4.139 26 C -0.117 4.117 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.224 0.776 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.069 0.931 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.134 0.866 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.139 7.365 -6.442 17.195 hybrid contribution 0.378 -0.967 0.441 1.127 sum -13.761 6.399 -6.002 16.320 Atomic orbital electron populations 1.21945 0.94845 1.01824 1.01493 1.20590 0.95499 0.95560 0.95547 1.21851 1.01198 0.95297 1.01422 1.21953 1.01331 1.00322 0.96646 1.21377 1.01601 0.93057 0.96944 1.21820 1.02166 0.97319 0.97056 1.20594 0.80616 0.81817 0.87544 1.90706 1.37827 1.66032 1.46871 1.46319 1.48463 1.11968 1.31034 1.20302 0.94109 0.89494 0.88384 0.89770 1.19410 0.87827 0.96507 0.97489 1.21059 1.03094 1.35905 0.94917 0.92450 1.24940 0.97183 0.96215 0.95775 1.69967 1.15525 1.44385 1.23508 0.86622 0.78554 0.79628 0.83429 1.20720 1.21254 1.19791 1.19916 0.94539 0.96786 0.93393 1.20833 0.98318 0.96000 0.98682 1.20975 0.99391 0.97298 0.96275 1.20977 1.01344 0.99942 0.93111 1.21043 0.98203 0.95824 0.98825 1.20983 0.97151 0.97534 0.96076 0.92678 0.92968 0.92376 0.92537 0.92920 0.92677 0.92312 0.92974 0.92455 0.91295 0.91005 0.88943 0.89336 0.77567 0.95790 0.95952 0.93073 0.86714 0.86734 0.86887 0.86630 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.12 37.16 0.30 -0.91 16 2 C -0.07 -0.69 0.80 -154.51 -0.12 -0.82 16 3 C -0.14 -1.28 8.47 37.16 0.31 -0.97 16 4 C -0.15 -1.33 8.12 37.16 0.30 -1.03 16 5 C -0.09 -1.14 3.56 -26.73 -0.10 -1.23 16 6 C -0.14 -1.78 5.00 -27.88 -0.14 -1.92 16 7 C 0.51 8.91 7.69 -10.98 -0.08 8.83 16 8 O -0.54 -11.89 15.68 5.56 0.09 -11.80 16 9 N -0.73 -12.45 5.05 -54.93 -0.28 -12.72 16 10 C 0.18 3.76 2.19 -69.08 -0.15 3.61 16 11 H 0.08 1.92 7.49 -51.93 -0.39 1.53 16 12 C 0.03 0.66 4.68 -27.88 -0.13 0.53 16 13 C -0.51 -14.38 8.53 -34.44 -0.29 -14.68 16 14 H 0.06 1.56 6.79 -52.49 -0.36 1.20 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 17 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.05 -0.86 4.50 -104.63 -0.47 -1.33 16 22 C -0.12 -1.98 9.02 -39.59 -0.36 -2.34 16 23 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 24 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 26 C -0.10 -1.78 8.83 -39.58 -0.35 -2.13 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.09 1.04 6.43 -51.93 -0.33 0.70 16 39 H 0.09 0.89 6.43 -51.93 -0.33 0.55 16 40 H 0.39 5.39 6.87 -40.82 -0.28 5.11 16 41 H 0.02 0.70 8.08 -51.93 -0.42 0.28 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.11 1.70 6.95 -52.49 -0.36 1.33 16 45 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 46 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 48 H 0.12 2.15 7.84 -52.49 -0.41 1.74 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -33.15 383.53 -9.45 -42.60 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -8.18 Total: 5.09 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -2.57 Total: -19.58 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.46 Total: -39.13 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.15 -9.45 -42.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153570798.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.344 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds