Wall clock time and date at job start Tue Mar 31 2020 08:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 C 1.53002 * 109.46950 * 240.00308 * 2 1 3 5 5 C 1.53002 * 109.47325 * 120.00234 * 2 1 3 6 6 C 1.53006 * 109.46829 * 59.99719 * 5 2 1 7 7 C 1.50702 * 109.46586 * 180.02562 * 6 5 2 8 8 O 1.21280 * 120.00208 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99469 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99717 * 175.03884 * 9 7 6 11 11 H 1.09001 * 109.47081 * 38.67413 * 10 9 7 12 12 C 1.53001 * 109.47016 * 278.67071 * 10 9 7 13 13 C 1.50701 * 109.46726 * 174.20469 * 12 10 9 14 14 H 1.08000 * 120.00052 * 354.86058 * 13 12 10 15 15 C 1.37877 * 119.99782 * 174.58567 * 13 12 10 16 16 N 1.31518 * 119.99836 * 0.27267 * 15 13 12 17 17 Si 1.86795 * 120.00105 * 180.27528 * 15 13 12 18 18 H 1.48503 * 109.47286 * 89.99708 * 17 15 13 19 19 H 1.48495 * 109.47263 * 209.99651 * 17 15 13 20 20 H 1.48501 * 109.47161 * 330.00038 * 17 15 13 21 21 C 1.50700 * 109.46855 * 158.67031 * 10 9 7 22 22 C 1.38227 * 119.99988 * 39.72685 * 21 10 9 23 23 C 1.38237 * 119.99683 * 179.78655 * 22 21 10 24 24 C 1.38236 * 120.00247 * 0.44407 * 23 22 21 25 25 C 1.38236 * 119.99844 * 359.80810 * 24 23 22 26 26 C 1.38233 * 119.99580 * 220.00096 * 21 10 9 27 27 H 1.09000 * 109.46818 * 299.99977 * 1 2 3 28 28 H 1.09003 * 109.47198 * 59.99393 * 1 2 3 29 29 H 1.09001 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46615 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47274 * 300.00008 * 3 2 1 32 32 H 1.09000 * 109.47308 * 60.00323 * 3 2 1 33 33 H 1.09001 * 109.47111 * 299.99974 * 4 2 1 34 34 H 1.08999 * 109.47377 * 59.99970 * 4 2 1 35 35 H 1.08995 * 109.46967 * 180.02562 * 4 2 1 36 36 H 1.09003 * 109.46953 * 300.00203 * 5 2 1 37 37 H 1.08993 * 109.46936 * 179.97438 * 5 2 1 38 38 H 1.08996 * 109.46645 * 60.00237 * 6 5 2 39 39 H 1.08998 * 109.46817 * 300.00186 * 6 5 2 40 40 H 0.96995 * 120.00341 * 355.03350 * 9 7 6 41 41 H 1.09001 * 109.47044 * 54.20777 * 12 10 9 42 42 H 1.08997 * 109.47226 * 294.20257 * 12 10 9 43 43 H 0.97005 * 119.99678 * 180.02562 * 16 15 13 44 44 H 1.07998 * 120.00026 * 359.97438 * 22 21 10 45 45 H 1.08003 * 119.99871 * 180.27742 * 23 22 21 46 46 H 1.08000 * 119.99817 * 179.83930 * 24 23 22 47 47 H 1.07996 * 119.99953 * 180.02562 * 25 24 23 48 48 H 1.07998 * 120.00544 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2491 7 6 2.0319 -2.8741 2.4799 8 8 2.7292 -2.2847 3.2782 9 7 1.7066 -4.1646 2.6929 10 6 2.2816 -4.8867 3.8305 11 1 2.3361 -4.2221 4.6928 12 6 3.6876 -5.3703 3.4696 13 6 4.3334 -5.9875 4.6833 14 1 3.8292 -5.9565 5.6378 15 6 5.5654 -6.5968 4.5738 16 7 6.1793 -6.6346 3.4113 17 14 6.3625 -7.3686 6.0765 18 1 5.9459 -8.7900 6.1828 19 1 7.8399 -7.2942 5.9464 20 1 5.9353 -6.6352 7.2951 21 6 1.4128 -6.0720 4.1640 22 6 0.8505 -6.8240 3.1496 23 6 0.0572 -7.9140 3.4556 24 6 -0.1813 -8.2464 4.7760 25 6 0.3767 -7.4912 5.7905 26 6 1.1736 -6.4038 5.4845 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1299 -0.7216 -1.2491 36 1 1.6767 -0.2075 2.1392 37 1 3.1300 -0.7217 1.2489 38 1 1.8933 -2.6775 0.3591 39 1 0.4400 -2.1637 1.2491 40 1 1.0917 -4.6151 2.0931 41 1 4.2863 -4.5253 3.1295 42 1 3.6233 -6.1134 2.6748 43 1 7.0459 -7.0636 3.3343 44 1 1.0335 -6.5619 2.1180 45 1 -0.3785 -8.5042 2.6630 46 1 -0.8033 -9.0964 5.0150 47 1 0.1907 -7.7511 6.8221 48 1 1.6096 -5.8139 6.2771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153570798.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:56 Heat of formation + Delta-G solvation = -65.802671 kcal Electronic energy + Delta-G solvation = -24869.976324 eV Core-core repulsion = 21501.573900 eV Total energy + Delta-G solvation = -3368.402424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16173 -39.95818 -38.55642 -36.65311 -34.86860 -32.99177 -31.79570 -31.50941 -30.35690 -28.10408 -28.07410 -27.00092 -25.14146 -23.91166 -23.45942 -21.64021 -21.02031 -19.43451 -18.76752 -18.37643 -17.31187 -16.76948 -16.72685 -16.41351 -15.98958 -15.52690 -15.29587 -15.26504 -14.88658 -14.65108 -14.35380 -14.16948 -14.16198 -14.05220 -13.80742 -13.33938 -13.13835 -12.95786 -12.72793 -12.66139 -12.62149 -12.55001 -12.50407 -12.00995 -11.95851 -11.87391 -11.64458 -11.45479 -11.42462 -11.38545 -11.34566 -10.76116 -10.57745 -9.99085 -9.70418 -9.44558 -8.21235 -6.29923 0.55750 0.60967 1.35801 1.37770 1.48127 1.74081 2.29998 2.44222 3.00866 3.13507 3.74769 3.84131 3.87137 3.94266 4.05004 4.14348 4.24933 4.31578 4.35406 4.44716 4.50927 4.64218 4.69841 4.73424 4.81954 4.82532 4.84201 4.89220 4.97265 5.08195 5.10920 5.14622 5.14861 5.21046 5.23187 5.29374 5.32606 5.42035 5.46874 5.54219 5.57846 5.59446 5.66002 5.69421 5.74092 5.90966 6.20053 6.23151 6.67734 6.82102 7.36840 7.39890 8.91285 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.003929 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.667126 B = 7124.671120 C = 8692.229721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.090 4.090 6 C -0.130 4.130 7 C 0.499 3.501 8 O -0.592 6.592 9 N -0.716 5.716 10 C 0.196 3.804 11 H 0.054 0.946 12 C 0.040 3.960 13 C -0.525 4.525 14 H 0.061 0.939 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.958 3.042 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.265 1.265 21 C -0.072 4.072 22 C -0.129 4.129 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.124 4.124 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.410 0.590 41 H -0.023 1.023 42 H 0.003 0.997 43 H 0.262 0.738 44 H 0.127 0.873 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.141 0.859 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.473 5.343 -7.526 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.203 4.203 5 C -0.128 4.128 6 C -0.170 4.170 7 C 0.288 3.712 8 O -0.472 6.472 9 N -0.368 5.368 10 C 0.092 3.908 11 H 0.072 0.928 12 C 0.002 3.998 13 C -0.563 4.563 14 H 0.079 0.921 15 C -0.194 4.194 16 N -0.573 5.573 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.190 1.190 21 C -0.073 4.073 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.143 4.143 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.129 0.871 39 H 0.142 0.858 40 H 0.247 0.753 41 H -0.005 1.005 42 H 0.021 0.979 43 H 0.071 0.929 44 H 0.145 0.855 45 H 0.168 0.832 46 H 0.168 0.832 47 H 0.159 0.841 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.825 5.706 -7.056 19.116 hybrid contribution 1.172 -0.457 0.617 1.401 sum -15.654 5.249 -6.439 17.721 Atomic orbital electron populations 1.21939 0.93259 1.02609 1.02154 1.20554 0.96679 0.95372 0.94087 1.21866 1.00621 0.95240 1.02151 1.21968 1.00601 1.00843 0.96915 1.21348 0.99830 0.93463 0.98144 1.21858 1.04073 0.96502 0.94518 1.21642 0.79493 0.81693 0.88406 1.90678 1.40265 1.67188 1.49100 1.46170 1.48304 1.11948 1.30393 1.19695 0.92435 0.90283 0.88407 0.92759 1.19151 0.90498 0.93908 0.96214 1.21433 1.03525 1.35687 0.95685 0.92114 1.25858 0.97818 0.96799 0.98894 1.70101 1.16000 1.45423 1.25774 0.85549 0.77447 0.79091 0.79663 1.19390 1.20859 1.18971 1.19767 0.96041 0.96820 0.94659 1.21052 0.98505 0.96498 0.98673 1.21405 0.98142 0.96407 0.97646 1.21461 1.00441 1.00193 0.92587 1.21363 0.97233 0.94782 1.00752 1.21079 0.98692 0.98938 0.95550 0.92899 0.91491 0.91514 0.93565 0.91209 0.92898 0.91694 0.91323 0.93734 0.92711 0.93936 0.87082 0.85829 0.75311 1.00503 0.97897 0.92916 0.85548 0.83240 0.83182 0.84129 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.12 71.98 0.58 -1.48 16 2 C -0.07 -1.22 0.80 -52.18 -0.04 -1.26 16 3 C -0.14 -2.51 8.47 71.98 0.61 -1.90 16 4 C -0.15 -2.46 8.12 71.98 0.58 -1.88 16 5 C -0.09 -2.29 3.56 30.60 0.11 -2.18 16 6 C -0.13 -3.16 5.00 29.85 0.15 -3.01 16 7 C 0.50 18.30 7.69 87.66 0.67 18.97 16 8 O -0.59 -28.21 15.68 -3.03 -0.05 -28.25 16 9 N -0.72 -25.37 5.05 -446.08 -2.25 -27.62 16 10 C 0.20 8.67 2.19 44.25 0.10 8.76 16 11 H 0.05 2.68 7.49 -2.39 -0.02 2.67 16 12 C 0.04 2.23 4.68 29.85 0.14 2.36 16 13 C -0.52 -30.76 8.53 25.60 0.22 -30.55 16 14 H 0.06 3.44 6.79 -2.91 -0.02 3.42 16 15 C 0.00 0.23 5.46 84.65 0.46 0.70 16 16 N -0.93 -58.36 13.29 21.45 0.28 -58.08 16 17 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 21 C -0.07 -2.75 4.50 -19.87 -0.09 -2.84 16 22 C -0.13 -4.09 9.02 22.27 0.20 -3.89 16 23 C -0.12 -3.08 10.05 22.27 0.22 -2.85 16 24 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 25 C -0.12 -3.58 10.05 22.27 0.22 -3.35 16 26 C -0.12 -4.49 8.83 22.27 0.20 -4.30 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.85 6.43 -2.39 -0.02 0.83 16 30 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.00 6.43 -2.39 -0.02 0.99 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 37 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 38 H 0.11 2.34 6.43 -2.39 -0.02 2.32 16 39 H 0.12 2.18 6.43 -2.39 -0.02 2.16 16 40 H 0.41 11.14 6.87 -92.71 -0.64 10.50 16 41 H -0.02 -1.48 8.08 -2.39 -0.02 -1.50 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 44 H 0.13 3.56 6.95 -2.91 -0.02 3.54 16 45 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 46 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 47 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 48 H 0.11 4.04 7.84 -2.91 -0.02 4.01 16 Total: -1.00 -76.99 383.53 4.87 -72.12 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.29 Total: 25.60 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: 4.57 Total: -31.70 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -1.97 Total: -85.70 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -76.99 4.87 -72.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153570798.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.317 kcal (2) G-P(sol) polarization free energy of solvation -76.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds