Wall clock time and date at job start Tue Mar 31 2020 08:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 C 1.53002 * 109.47372 * 301.54689 * 3 2 1 5 5 C 1.52993 * 109.47198 * 294.98075 * 4 3 2 6 6 C 1.53001 * 109.47304 * 61.55118 * 3 2 1 7 7 C 1.50700 * 109.46936 * 64.99854 * 6 3 2 8 8 O 1.21284 * 120.00579 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00126 * 180.02562 * 7 6 3 10 10 C 1.46500 * 120.00508 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.46826 * 324.99500 * 10 9 7 12 12 C 1.52998 * 109.47193 * 204.99927 * 10 9 7 13 13 C 1.50702 * 109.47331 * 64.99637 * 12 10 9 14 14 H 1.07997 * 119.99895 * 0.02562 * 13 12 10 15 15 C 1.37872 * 120.00238 * 179.72375 * 13 12 10 16 16 N 1.31511 * 120.00497 * 180.27497 * 15 13 12 17 17 Si 1.86803 * 120.00017 * 0.27757 * 15 13 12 18 18 H 1.48495 * 109.47365 * 89.99722 * 17 15 13 19 19 H 1.48500 * 109.47332 * 209.99876 * 17 15 13 20 20 H 1.48505 * 109.46879 * 329.99738 * 17 15 13 21 21 C 1.50699 * 109.47271 * 84.99647 * 10 9 7 22 22 C 1.38228 * 119.99983 * 39.72915 * 21 10 9 23 23 C 1.38234 * 119.99846 * 179.78606 * 22 21 10 24 24 C 1.38232 * 120.00260 * 0.44645 * 23 22 21 25 25 C 1.38234 * 119.99755 * 359.80656 * 24 23 22 26 26 C 1.38236 * 120.00172 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47034 * 181.89113 * 1 2 3 28 28 H 1.09003 * 109.47031 * 301.88202 * 1 2 3 29 29 H 1.08996 * 109.47723 * 61.89028 * 1 2 3 30 30 H 1.08996 * 109.47239 * 240.00329 * 2 1 3 31 31 H 1.08996 * 109.47446 * 120.00136 * 2 1 3 32 32 H 1.09002 * 109.46988 * 181.54744 * 3 2 1 33 33 H 1.09003 * 109.46519 * 54.97905 * 4 3 2 34 34 H 1.09000 * 109.46981 * 174.97356 * 4 3 2 35 35 H 1.09002 * 109.46903 * 185.79217 * 5 4 3 36 36 H 1.08999 * 109.47295 * 305.79511 * 5 4 3 37 37 H 1.09006 * 109.47497 * 65.79558 * 5 4 3 38 38 H 1.09003 * 109.46797 * 305.00337 * 6 3 2 39 39 H 1.08999 * 109.47315 * 185.00068 * 6 3 2 40 40 H 0.97009 * 119.99690 * 359.97438 * 9 7 6 41 41 H 1.08994 * 109.47249 * 304.99733 * 12 10 9 42 42 H 1.09001 * 109.47235 * 184.99507 * 12 10 9 43 43 H 0.97003 * 120.00484 * 180.02562 * 16 15 13 44 44 H 1.08001 * 119.99954 * 0.02562 * 22 21 10 45 45 H 1.08000 * 120.00105 * 180.27569 * 23 22 21 46 46 H 1.07998 * 120.00426 * 179.83681 * 24 23 22 47 47 H 1.08000 * 120.00283 * 180.02562 * 25 24 23 48 48 H 1.08002 * 120.00314 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4983 2.1750 -1.2293 5 6 2.0768 1.5417 -2.4962 6 6 1.5620 2.1524 1.2683 7 6 2.1940 1.5061 2.4741 8 8 2.9523 0.5702 2.3330 9 7 1.9165 1.9682 3.7094 10 6 2.5312 1.3403 4.8816 11 1 2.6337 0.2690 4.7082 12 6 1.6480 1.5761 6.1085 13 6 0.3304 0.8688 5.9224 14 1 0.1419 0.3069 5.0195 15 6 -0.6322 0.9338 6.9073 16 7 -1.7799 0.3121 6.7473 17 14 -0.3060 1.9051 8.4693 18 1 -0.7562 3.3078 8.2831 19 1 -1.0509 1.2919 9.5982 20 1 1.1485 1.8876 8.7684 21 6 3.8919 1.9432 5.1188 22 6 4.0855 3.3011 4.9477 23 6 5.3326 3.8547 5.1696 24 6 6.3882 3.0491 5.5536 25 6 6.1957 1.6903 5.7196 26 6 4.9476 1.1373 5.5021 27 1 -0.3633 -1.0271 0.0339 28 1 -0.3633 0.5428 0.8727 29 1 -0.3634 0.4842 -0.9064 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.1296 1.4427 -0.0278 33 1 0.4112 2.0979 -1.2484 34 1 1.7874 3.2249 -1.1833 35 1 1.7738 2.1258 -3.3652 36 1 3.1647 1.5258 -2.4304 37 1 1.7039 0.5222 -2.5957 38 1 0.4772 2.0749 1.3412 39 1 1.8492 3.2031 1.2268 40 1 1.3102 2.7170 3.8223 41 1 1.4726 2.6449 6.2299 42 1 2.1472 1.1867 6.9958 43 1 -2.4573 0.3582 7.4402 44 1 3.2616 3.9301 4.6445 45 1 5.4828 4.9164 5.0402 46 1 7.3631 3.4812 5.7243 47 1 7.0203 1.0608 6.0200 48 1 4.7973 0.0756 5.6314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153584129.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:02 Heat of formation + Delta-G solvation = -44.735857 kcal Electronic energy + Delta-G solvation = -25321.641336 eV Core-core repulsion = 21954.152438 eV Total energy + Delta-G solvation = -3367.488899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.85131 -38.75719 -36.91475 -35.12601 -32.66669 -31.48153 -31.09650 -30.56872 -29.63526 -29.11776 -25.52208 -24.33888 -23.36248 -22.32985 -21.77251 -20.40563 -19.69195 -18.76779 -17.16650 -16.55498 -16.35596 -15.78265 -15.46974 -15.19863 -14.81009 -14.36543 -14.14302 -13.95245 -13.45899 -13.33606 -13.08839 -12.87933 -12.76356 -12.59838 -12.39672 -12.37959 -11.99153 -11.89449 -11.68869 -11.32816 -11.27590 -11.09374 -11.01600 -10.76158 -10.53775 -10.30717 -10.28819 -10.23867 -10.18012 -9.88017 -9.36692 -9.14862 -8.64666 -8.60857 -8.41520 -8.29255 -6.12148 -4.11798 1.68058 1.70594 3.20155 3.23817 3.33244 3.36406 3.76138 4.15857 4.37144 4.86722 4.92051 4.96285 5.16655 5.18407 5.21663 5.25657 5.30918 5.37013 5.44156 5.46035 5.54297 5.65965 5.78038 5.79060 5.81529 5.83611 5.84792 5.92265 5.95250 6.07080 6.14027 6.20823 6.24616 6.31432 6.32023 6.42976 6.44255 6.59107 6.72811 6.74438 6.76221 6.87134 6.92946 7.06636 7.30618 7.37086 7.64455 8.15483 8.43219 8.83416 8.93751 9.48878 11.00590 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009636 B = 0.005244 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.927272 B = 5338.089204 C = 7577.288983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C -0.068 4.068 4 C -0.123 4.123 5 C -0.151 4.151 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.547 6.547 9 N -0.704 5.704 10 C 0.194 3.806 11 H 0.091 0.909 12 C -0.014 4.014 13 C -0.519 4.519 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.874 3.126 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.075 4.075 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.108 4.108 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.400 0.600 41 H 0.018 0.982 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.823 6.702 -10.992 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.163 4.163 3 C -0.087 4.087 4 C -0.161 4.161 5 C -0.208 4.208 6 C -0.182 4.182 7 C 0.300 3.700 8 O -0.425 6.425 9 N -0.353 5.353 10 C 0.090 3.910 11 H 0.109 0.891 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.094 0.906 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.702 3.298 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.076 4.076 22 C -0.128 4.128 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.126 4.126 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.234 0.766 41 H 0.036 0.964 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.135 0.865 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.171 5.982 -10.994 16.127 hybrid contribution -0.332 0.921 1.068 1.449 sum 9.839 6.903 -9.925 15.587 Atomic orbital electron populations 1.21906 0.96475 1.01496 1.01477 1.21665 0.95426 0.96181 1.03043 1.20900 1.00588 0.95125 0.92058 1.21652 1.00973 0.99077 0.94386 1.21778 1.00942 1.00947 0.97146 1.21822 1.02522 1.00473 0.93375 1.20548 0.81353 0.83599 0.84533 1.90614 1.37032 1.28671 1.86202 1.45948 1.47716 1.36200 1.05396 1.19927 0.87469 0.97185 0.86445 0.89104 1.19871 0.95564 0.97282 0.92412 1.21009 0.97059 1.32193 1.05468 0.90605 1.24977 0.94930 0.95112 0.98041 1.69901 1.06138 1.43067 1.34522 0.86867 0.78953 0.80418 0.83611 1.20277 1.21321 1.18950 1.20593 0.96359 0.93843 0.96787 1.20923 0.96923 0.94763 1.00202 1.21050 0.93335 0.99298 1.00656 1.21011 0.98584 0.94044 1.01589 1.21062 0.97048 0.95149 1.00780 1.21047 0.92379 0.99909 0.99282 0.93136 0.92378 0.93019 0.92585 0.89738 0.90773 0.91495 0.92362 0.93204 0.92869 0.92505 0.88602 0.89625 0.76585 0.96376 0.94946 0.92646 0.86521 0.86700 0.86789 0.86537 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.21 37.15 0.34 -1.67 16 2 C -0.13 -1.72 5.19 -26.73 -0.14 -1.86 16 3 C -0.07 -0.85 1.81 -90.62 -0.16 -1.01 16 4 C -0.12 -1.24 5.15 -26.73 -0.14 -1.38 16 5 C -0.15 -1.40 9.52 37.15 0.35 -1.05 16 6 C -0.14 -1.85 4.99 -27.88 -0.14 -1.99 16 7 C 0.51 8.78 7.49 -10.99 -0.08 8.70 16 8 O -0.55 -11.02 13.63 5.55 0.08 -10.94 16 9 N -0.70 -12.29 4.02 -54.93 -0.22 -12.51 16 10 C 0.19 3.81 2.12 -69.08 -0.15 3.66 16 11 H 0.09 1.99 7.44 -51.93 -0.39 1.61 16 12 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 13 C -0.52 -13.81 9.39 -34.44 -0.32 -14.14 16 14 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -26.64 13.96 55.43 0.77 -25.86 16 17 Si 0.87 20.80 27.47 -169.99 -4.67 16.13 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 21 C -0.07 -1.32 4.91 -104.63 -0.51 -1.83 16 22 C -0.11 -1.74 9.32 -39.59 -0.37 -2.11 16 23 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 24 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 25 C -0.12 -1.76 10.05 -39.58 -0.40 -2.15 16 26 C -0.11 -1.79 9.67 -39.58 -0.38 -2.18 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.81 6.27 -51.93 -0.33 0.48 16 29 H 0.05 0.57 6.39 -51.93 -0.33 0.24 16 30 H 0.06 0.70 6.77 -51.93 -0.35 0.35 16 31 H 0.08 1.43 5.93 -51.93 -0.31 1.13 16 32 H 0.07 1.03 7.95 -51.93 -0.41 0.61 16 33 H 0.07 0.66 6.17 -51.93 -0.32 0.34 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.54 6.89 -51.93 -0.36 0.18 16 38 H 0.10 1.21 6.18 -51.93 -0.32 0.89 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.40 6.36 8.60 -40.82 -0.35 6.01 16 41 H 0.02 0.39 7.58 -51.93 -0.39 0.00 16 42 H 0.03 0.75 7.19 -51.93 -0.37 0.37 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.12 1.69 7.71 -52.49 -0.40 1.29 16 45 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 48 H 0.12 1.95 8.04 -52.49 -0.42 1.52 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -30.80 378.08 -9.46 -40.27 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.03 Total: 9.12 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -3.09 Total: -21.90 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.55 Total: -38.38 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.80 -9.46 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153584129.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.468 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds