Wall clock time and date at job start Tue Mar 31 2020 08:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 C 1.53002 * 109.47372 * 301.54689 * 3 2 1 5 5 C 1.52993 * 109.47198 * 294.98075 * 4 3 2 6 6 C 1.53001 * 109.47304 * 61.55118 * 3 2 1 7 7 C 1.50700 * 109.46936 * 64.99854 * 6 3 2 8 8 O 1.21284 * 120.00579 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00126 * 180.02562 * 7 6 3 10 10 C 1.46500 * 120.00508 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.46826 * 324.99500 * 10 9 7 12 12 C 1.52998 * 109.47193 * 204.99927 * 10 9 7 13 13 C 1.50702 * 109.47331 * 64.99637 * 12 10 9 14 14 H 1.07997 * 119.99895 * 0.02562 * 13 12 10 15 15 C 1.37872 * 120.00238 * 179.72375 * 13 12 10 16 16 N 1.31511 * 120.00497 * 180.27497 * 15 13 12 17 17 Si 1.86803 * 120.00017 * 0.27757 * 15 13 12 18 18 H 1.48495 * 109.47365 * 89.99722 * 17 15 13 19 19 H 1.48500 * 109.47332 * 209.99876 * 17 15 13 20 20 H 1.48505 * 109.46879 * 329.99738 * 17 15 13 21 21 C 1.50699 * 109.47271 * 84.99647 * 10 9 7 22 22 C 1.38228 * 119.99983 * 39.72915 * 21 10 9 23 23 C 1.38234 * 119.99846 * 179.78606 * 22 21 10 24 24 C 1.38232 * 120.00260 * 0.44645 * 23 22 21 25 25 C 1.38234 * 119.99755 * 359.80656 * 24 23 22 26 26 C 1.38236 * 120.00172 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47034 * 181.89113 * 1 2 3 28 28 H 1.09003 * 109.47031 * 301.88202 * 1 2 3 29 29 H 1.08996 * 109.47723 * 61.89028 * 1 2 3 30 30 H 1.08996 * 109.47239 * 240.00329 * 2 1 3 31 31 H 1.08996 * 109.47446 * 120.00136 * 2 1 3 32 32 H 1.09002 * 109.46988 * 181.54744 * 3 2 1 33 33 H 1.09003 * 109.46519 * 54.97905 * 4 3 2 34 34 H 1.09000 * 109.46981 * 174.97356 * 4 3 2 35 35 H 1.09002 * 109.46903 * 185.79217 * 5 4 3 36 36 H 1.08999 * 109.47295 * 305.79511 * 5 4 3 37 37 H 1.09006 * 109.47497 * 65.79558 * 5 4 3 38 38 H 1.09003 * 109.46797 * 305.00337 * 6 3 2 39 39 H 1.08999 * 109.47315 * 185.00068 * 6 3 2 40 40 H 0.97009 * 119.99690 * 359.97438 * 9 7 6 41 41 H 1.08994 * 109.47249 * 304.99733 * 12 10 9 42 42 H 1.09001 * 109.47235 * 184.99507 * 12 10 9 43 43 H 0.97003 * 120.00484 * 180.02562 * 16 15 13 44 44 H 1.08001 * 119.99954 * 0.02562 * 22 21 10 45 45 H 1.08000 * 120.00105 * 180.27569 * 23 22 21 46 46 H 1.07998 * 120.00426 * 179.83681 * 24 23 22 47 47 H 1.08000 * 120.00283 * 180.02562 * 25 24 23 48 48 H 1.08002 * 120.00314 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4983 2.1750 -1.2293 5 6 2.0768 1.5417 -2.4962 6 6 1.5620 2.1524 1.2683 7 6 2.1940 1.5061 2.4741 8 8 2.9523 0.5702 2.3330 9 7 1.9165 1.9682 3.7094 10 6 2.5312 1.3403 4.8816 11 1 2.6337 0.2690 4.7082 12 6 1.6480 1.5761 6.1085 13 6 0.3304 0.8688 5.9224 14 1 0.1419 0.3069 5.0195 15 6 -0.6322 0.9338 6.9073 16 7 -1.7799 0.3121 6.7473 17 14 -0.3060 1.9051 8.4693 18 1 -0.7562 3.3078 8.2831 19 1 -1.0509 1.2919 9.5982 20 1 1.1485 1.8876 8.7684 21 6 3.8919 1.9432 5.1188 22 6 4.0855 3.3011 4.9477 23 6 5.3326 3.8547 5.1696 24 6 6.3882 3.0491 5.5536 25 6 6.1957 1.6903 5.7196 26 6 4.9476 1.1373 5.5021 27 1 -0.3633 -1.0271 0.0339 28 1 -0.3633 0.5428 0.8727 29 1 -0.3634 0.4842 -0.9064 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.1296 1.4427 -0.0278 33 1 0.4112 2.0979 -1.2484 34 1 1.7874 3.2249 -1.1833 35 1 1.7738 2.1258 -3.3652 36 1 3.1647 1.5258 -2.4304 37 1 1.7039 0.5222 -2.5957 38 1 0.4772 2.0749 1.3412 39 1 1.8492 3.2031 1.2268 40 1 1.3102 2.7170 3.8223 41 1 1.4726 2.6449 6.2299 42 1 2.1472 1.1867 6.9958 43 1 -2.4573 0.3582 7.4402 44 1 3.2616 3.9301 4.6445 45 1 5.4828 4.9164 5.0402 46 1 7.3631 3.4812 5.7243 47 1 7.0203 1.0608 6.0200 48 1 4.7973 0.0756 5.6314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153584129.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:01 Heat of formation + Delta-G solvation = -61.147522 kcal Electronic energy + Delta-G solvation = -25322.353000 eV Core-core repulsion = 21954.152438 eV Total energy + Delta-G solvation = -3368.200562 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20231 -39.95135 -38.04323 -36.64743 -34.67684 -32.86943 -32.03847 -31.71724 -31.00511 -30.55100 -26.99157 -25.62661 -24.30513 -23.59746 -23.26662 -21.79904 -21.10530 -19.83885 -19.06044 -17.96209 -17.68208 -16.91885 -16.83749 -16.40886 -16.14558 -15.96806 -15.42985 -15.12884 -14.83947 -14.56073 -14.43324 -14.18763 -14.10085 -13.91500 -13.71117 -13.57732 -13.48393 -13.04533 -12.81017 -12.77095 -12.49882 -12.35087 -12.24807 -11.98141 -11.90910 -11.80383 -11.72114 -11.44930 -11.37627 -11.32249 -11.19534 -10.78464 -10.54601 -9.90835 -9.76007 -9.53883 -8.28176 -6.32793 0.49564 0.55084 1.35280 1.39031 1.49468 1.83264 2.35312 2.42665 2.96321 3.07858 3.83349 3.85947 3.94534 3.99355 4.02936 4.20173 4.23528 4.32047 4.39009 4.46007 4.46764 4.58719 4.59416 4.64922 4.71649 4.72898 4.75512 4.83874 4.96888 5.00496 5.03791 5.09598 5.14720 5.17556 5.17734 5.26778 5.33323 5.36725 5.43168 5.51333 5.55245 5.63007 5.63965 5.65807 5.69977 5.89677 6.17454 6.26155 6.72621 6.78664 7.31275 7.46318 8.88099 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009636 B = 0.005244 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.927272 B = 5338.089204 C = 7577.288983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.063 4.063 4 C -0.117 4.117 5 C -0.151 4.151 6 C -0.135 4.135 7 C 0.506 3.494 8 O -0.583 6.583 9 N -0.702 5.702 10 C 0.205 3.795 11 H 0.051 0.949 12 C -0.004 4.004 13 C -0.518 4.518 14 H 0.031 0.969 15 C 0.013 3.987 16 N -0.947 5.947 17 Si 0.944 3.056 18 H -0.260 1.260 19 H -0.289 1.289 20 H -0.252 1.252 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.133 4.133 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.408 0.592 41 H 0.035 0.965 42 H 0.026 0.974 43 H 0.266 0.734 44 H 0.127 0.873 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.141 0.859 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.476 10.060 -11.252 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.082 4.082 4 C -0.154 4.154 5 C -0.208 4.208 6 C -0.174 4.174 7 C 0.294 3.706 8 O -0.464 6.464 9 N -0.352 5.352 10 C 0.100 3.900 11 H 0.069 0.931 12 C -0.042 4.042 13 C -0.556 4.556 14 H 0.050 0.950 15 C -0.184 4.184 16 N -0.587 5.587 17 Si 0.768 3.232 18 H -0.185 1.185 19 H -0.215 1.215 20 H -0.176 1.176 21 C -0.099 4.099 22 C -0.138 4.138 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.152 4.152 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.135 0.865 40 H 0.244 0.756 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.145 0.855 45 H 0.166 0.834 46 H 0.168 0.832 47 H 0.159 0.841 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.830 9.360 -11.266 18.828 hybrid contribution -0.794 -0.215 1.088 1.364 sum 11.037 9.145 -10.178 17.579 Atomic orbital electron populations 1.21875 0.95768 1.01265 1.02020 1.21598 0.95989 0.97071 1.01511 1.20868 0.99716 0.94496 0.93151 1.21612 1.01202 0.99532 0.93056 1.21781 1.00724 1.00973 0.97351 1.21878 1.02384 1.01795 0.91342 1.21334 0.80823 0.83100 0.85301 1.90600 1.38779 1.30285 1.86699 1.45927 1.47830 1.36254 1.05185 1.19487 0.88898 0.95508 0.86126 0.93117 1.19719 0.93580 0.97328 0.93533 1.21177 0.99060 1.31570 1.03793 0.95026 1.25869 0.94493 0.96310 1.01758 1.70059 1.07464 1.45226 1.35992 0.85756 0.79389 0.79347 0.78747 1.18482 1.21467 1.17580 1.20401 0.95144 0.95116 0.99274 1.21105 0.98467 0.93823 1.00367 1.21453 0.92360 1.01060 0.99179 1.21476 1.00074 0.93430 0.99632 1.21372 0.96509 0.96321 0.99988 1.21171 0.93705 0.99652 1.00673 0.93736 0.93839 0.90424 0.91525 0.93841 0.92249 0.90850 0.90795 0.91560 0.93201 0.92916 0.87980 0.86496 0.75648 0.94657 0.95551 0.92544 0.85541 0.83404 0.83214 0.84098 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.21 71.98 0.66 -3.30 16 2 C -0.12 -3.51 5.19 30.59 0.16 -3.35 16 3 C -0.06 -1.56 1.81 -10.79 -0.02 -1.58 16 4 C -0.12 -2.08 5.15 30.59 0.16 -1.92 16 5 C -0.15 -2.49 9.52 71.98 0.69 -1.81 16 6 C -0.13 -3.44 4.99 29.85 0.15 -3.29 16 7 C 0.51 18.00 7.49 87.66 0.66 18.66 16 8 O -0.58 -25.07 13.63 -3.04 -0.04 -25.11 16 9 N -0.70 -25.40 4.02 -446.09 -1.79 -27.19 16 10 C 0.21 8.44 2.12 44.24 0.09 8.53 16 11 H 0.05 2.45 7.44 -2.38 -0.02 2.43 16 12 C 0.00 -0.18 3.56 29.85 0.11 -0.07 16 13 C -0.52 -28.74 9.39 25.60 0.24 -28.50 16 14 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 15 C 0.01 0.74 5.47 84.65 0.46 1.20 16 16 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 17 Si 0.94 42.91 27.47 68.60 1.88 44.80 16 18 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 21 C -0.10 -3.50 4.91 -19.87 -0.10 -3.59 16 22 C -0.12 -3.56 9.32 22.27 0.21 -3.35 16 23 C -0.12 -2.98 10.05 22.27 0.22 -2.76 16 24 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 25 C -0.12 -3.33 10.05 22.27 0.22 -3.10 16 26 C -0.13 -4.51 9.67 22.27 0.22 -4.29 16 27 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.04 1.24 6.27 -2.39 -0.01 1.23 16 29 H 0.08 1.60 6.39 -2.39 -0.02 1.59 16 30 H 0.07 1.70 6.77 -2.39 -0.02 1.68 16 31 H 0.04 1.59 5.93 -2.39 -0.01 1.57 16 32 H 0.06 1.64 7.95 -2.39 -0.02 1.63 16 33 H 0.07 1.24 6.17 -2.39 -0.01 1.22 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 0.91 6.89 -2.38 -0.02 0.89 16 38 H 0.10 2.53 6.18 -2.39 -0.01 2.51 16 39 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.41 13.09 8.60 -92.70 -0.80 12.29 16 41 H 0.04 1.49 7.58 -2.39 -0.02 1.47 16 42 H 0.03 1.23 7.19 -2.39 -0.02 1.21 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.13 3.41 7.71 -2.91 -0.02 3.38 16 45 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 46 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 48 H 0.11 3.78 8.04 -2.91 -0.02 3.76 16 Total: -1.00 -70.93 378.08 4.78 -66.15 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.08 Total: 34.45 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 4.35 Total: -35.29 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.49 Total: -85.00 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.04 Total: -25.11 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.80 kcal Total: -70.93 4.78 -66.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153584129.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.004 kcal (2) G-P(sol) polarization free energy of solvation -70.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds