Wall clock time and date at job start Tue Mar 31 2020 07:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47308 * 2 1 4 4 C 1.53005 * 109.47112 * 239.99814 * 2 1 3 5 5 C 1.52998 * 109.46854 * 300.00390 * 4 2 1 6 6 C 1.53004 * 109.47025 * 299.99216 * 5 4 2 7 7 C 1.53005 * 109.46664 * 60.00667 * 6 5 4 8 8 H 1.08992 * 109.47523 * 59.99939 * 7 6 5 9 9 N 1.46903 * 109.47071 * 180.02562 * 7 6 5 10 10 C 1.46904 * 110.99514 * 274.99944 * 9 7 6 11 11 C 1.50700 * 109.46763 * 179.97438 * 10 9 7 12 12 C 1.38309 * 119.93136 * 89.99913 * 11 10 9 13 13 C 1.38098 * 120.07021 * 179.97438 * 12 11 10 14 14 C 1.38875 * 119.93063 * 0.02562 * 13 12 11 15 15 O 1.35755 * 120.06689 * 180.02562 * 14 13 12 16 16 C 1.34822 * 117.00038 * 5.53796 * 15 14 13 17 17 H 1.08004 * 120.00470 * 354.93584 * 16 15 14 18 18 C 1.38660 * 120.00300 * 174.94514 * 16 15 14 19 19 N 1.31556 * 119.99320 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00472 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47242 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47289 * 300.00240 * 20 18 16 23 23 H 1.48504 * 109.46819 * 59.99609 * 20 18 16 24 24 C 1.38883 * 119.86225 * 0.27186 * 14 13 12 25 25 C 1.38101 * 119.92844 * 359.45102 * 24 14 13 26 26 C 1.53002 * 109.47186 * 299.99566 * 7 6 5 27 27 H 1.09001 * 109.47099 * 299.99914 * 1 2 3 28 28 H 1.09000 * 109.47590 * 60.00160 * 1 2 3 29 29 H 1.09002 * 109.47326 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47194 * 180.02562 * 3 2 1 31 31 H 1.09010 * 109.46501 * 299.99901 * 3 2 1 32 32 H 1.08998 * 109.47240 * 59.99556 * 3 2 1 33 33 H 1.09000 * 109.46871 * 59.99586 * 4 2 1 34 34 H 1.08999 * 109.47299 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47804 * 59.99530 * 5 4 2 36 36 H 1.08998 * 109.46909 * 180.02562 * 5 4 2 37 37 H 1.09003 * 109.47582 * 300.00720 * 6 5 4 38 38 H 1.09002 * 109.47321 * 180.02562 * 6 5 4 39 39 H 1.00893 * 111.00134 * 151.04287 * 9 7 6 40 40 H 1.09000 * 109.47330 * 60.00191 * 10 9 7 41 41 H 1.08997 * 109.46987 * 299.99125 * 10 9 7 42 42 H 1.08001 * 119.96001 * 359.97438 * 12 11 10 43 43 H 1.08000 * 120.03090 * 179.97438 * 13 12 11 44 44 H 0.97008 * 119.99684 * 180.02562 * 19 18 16 45 45 H 1.07997 * 120.02924 * 179.72630 * 24 14 13 46 46 H 1.08000 * 119.96205 * 180.27275 * 25 24 14 47 47 H 1.08998 * 109.47240 * 179.97438 * 26 7 6 48 48 H 1.08999 * 109.47533 * 300.00507 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5299 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2494 9 7 2.0202 -2.8558 2.4488 10 6 1.1369 -3.9727 2.8099 11 6 1.6710 -4.6574 4.0416 12 6 1.2676 -4.2354 5.2955 13 6 1.7548 -4.8611 6.4260 14 6 2.6511 -5.9148 6.3031 15 8 3.1314 -6.5322 7.4126 16 6 2.6127 -6.1520 8.5976 17 1 1.9107 -5.3324 8.6419 18 6 2.9805 -6.8132 9.7596 19 7 3.8353 -7.8118 9.7056 20 14 2.2624 -6.2861 11.4014 21 1 2.8113 -7.1458 12.4807 22 1 2.6201 -4.8694 11.6663 23 1 0.7843 -6.4244 11.3625 24 6 3.0590 -6.3321 5.0428 25 6 2.5638 -5.7061 3.9159 26 6 2.0400 -0.7212 1.2493 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6765 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 0.4399 -2.1638 -1.2491 36 1 1.8936 -2.6777 -2.1389 37 1 3.1300 -2.8850 0.0000 38 1 1.6769 -3.9128 -0.0001 39 1 2.1245 -2.2134 3.2197 40 1 1.0976 -4.6858 1.9865 41 1 0.1349 -3.5934 3.0104 42 1 0.5708 -3.4157 5.3904 43 1 1.4397 -4.5308 7.4048 44 1 4.0924 -8.2746 10.5185 45 1 3.7594 -7.1483 4.9442 46 1 2.8773 -6.0331 2.9355 47 1 1.6763 -0.2072 2.1390 48 1 3.1300 -0.7212 1.2492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158903253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:23 Heat of formation + Delta-G solvation = -31.303075 kcal Electronic energy + Delta-G solvation = -24320.341819 eV Core-core repulsion = 20953.435409 eV Total energy + Delta-G solvation = -3366.906410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.94949 -38.99205 -36.94881 -35.26647 -32.81602 -32.26372 -30.67397 -30.11905 -28.07925 -27.61699 -26.58427 -25.48904 -23.91798 -22.43947 -21.90355 -20.70520 -20.35603 -18.59259 -17.95389 -16.99147 -15.90968 -15.34159 -15.24832 -14.84346 -14.71293 -14.52981 -14.20497 -14.08076 -13.68728 -13.56110 -13.43778 -13.20418 -12.74173 -12.65405 -12.54236 -12.24141 -12.12774 -12.07893 -11.67614 -11.59260 -11.47239 -11.26005 -11.20074 -11.13176 -10.85731 -10.65217 -10.63955 -10.49446 -10.41151 -10.20067 -10.09929 -9.31581 -8.81618 -8.28754 -8.13143 -7.15209 -6.43448 -4.02295 2.25894 2.32117 3.13614 3.14609 3.17525 3.97841 4.12346 4.41513 4.44600 4.59141 4.75037 4.94518 5.01897 5.11116 5.13331 5.14735 5.23512 5.30724 5.31746 5.38759 5.43101 5.44662 5.46169 5.52682 5.59985 5.70305 5.74176 5.76403 5.79426 5.84969 5.85434 5.92632 5.97149 6.08743 6.09448 6.14507 6.15823 6.24690 6.36319 6.46414 6.74376 6.93671 7.06296 7.18435 7.30432 7.39927 7.46368 7.56029 7.86528 8.01601 9.02087 9.72995 10.74593 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.002375 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.255403 B =11785.903779 C =12301.141433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.141 4.141 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.106 4.106 7 C 0.086 3.914 8 H 0.043 0.957 9 N -0.682 5.682 10 C 0.119 3.881 11 C -0.183 4.183 12 C -0.066 4.066 13 C -0.235 4.235 14 C 0.155 3.845 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.278 1.278 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.194 4.194 25 C -0.052 4.052 26 C -0.109 4.109 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.341 0.659 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.102 0.898 43 H 0.125 0.875 44 H 0.270 0.730 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.059 0.941 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 14.601 -19.318 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 C -0.199 4.199 4 C -0.145 4.145 5 C -0.160 4.160 6 C -0.144 4.144 7 C -0.024 4.024 8 H 0.060 0.940 9 N -0.314 5.314 10 C -0.009 4.009 11 C -0.185 4.185 12 C -0.085 4.085 13 C -0.254 4.254 14 C 0.102 3.898 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.203 1.203 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.214 4.214 25 C -0.071 4.071 26 C -0.147 4.147 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.160 0.840 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.120 0.880 43 H 0.143 0.857 44 H 0.080 0.920 45 H 0.134 0.866 46 H 0.129 0.871 47 H 0.078 0.922 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.379 13.855 -19.449 24.478 hybrid contribution -1.141 0.777 1.298 1.895 sum -6.520 14.632 -18.151 24.209 Atomic orbital electron populations 1.21991 0.94837 1.02059 1.01412 1.20501 0.95551 0.94991 0.95254 1.21863 1.01043 0.95380 1.01572 1.21592 1.00646 0.95435 0.96803 1.21595 1.00794 0.95554 0.98022 1.21521 1.01489 0.98636 0.92804 1.21562 0.96953 0.92540 0.91318 0.93951 1.60579 1.51099 1.12733 1.06963 1.20645 0.92414 0.92532 0.95295 1.19133 1.04879 1.01250 0.93210 1.20583 0.98084 0.97877 0.91962 1.21107 1.04451 1.00887 0.98942 1.19406 0.91238 0.90991 0.88205 1.83979 1.55834 1.56191 1.12151 1.21269 1.26655 1.17404 0.81508 0.89182 1.25284 0.96619 0.95573 0.99051 1.70033 1.30460 1.20008 1.29307 0.85788 0.79088 0.78671 0.79920 1.20276 1.19525 1.19539 1.20225 1.06579 1.04514 0.90062 1.20457 0.95151 0.94617 0.96843 1.21763 1.01512 0.94403 0.97020 0.92908 0.92899 0.92013 0.92614 0.92797 0.92718 0.92292 0.91897 0.91977 0.92084 0.91345 0.92211 0.84035 0.91273 0.95671 0.88015 0.85700 0.91989 0.86600 0.87107 0.92219 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 7.78 37.16 0.29 -0.80 16 2 C -0.06 -0.48 0.77 -154.51 -0.12 -0.60 16 3 C -0.14 -0.99 8.47 37.16 0.31 -0.68 16 4 C -0.11 -0.81 4.73 -26.73 -0.13 -0.93 16 5 C -0.12 -0.97 5.65 -26.73 -0.15 -1.12 16 6 C -0.11 -1.04 5.43 -26.73 -0.15 -1.19 16 7 C 0.09 0.88 2.22 -67.71 -0.15 0.73 16 8 H 0.04 0.44 6.09 -51.93 -0.32 0.13 16 9 N -0.68 -8.57 6.30 -107.99 -0.68 -9.25 16 10 C 0.12 1.63 5.61 -4.97 -0.03 1.60 16 11 C -0.18 -3.15 5.40 -104.57 -0.56 -3.71 16 12 C -0.07 -1.21 9.69 -39.61 -0.38 -1.60 16 13 C -0.23 -5.14 9.17 -39.40 -0.36 -5.50 16 14 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 15 O -0.18 -5.15 9.76 0.06 0.00 -5.15 16 16 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 17 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 20 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C -0.19 -4.20 9.99 -39.39 -0.39 -4.59 16 25 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 26 C -0.11 -0.99 4.00 -26.73 -0.11 -1.10 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.62 7.46 -51.93 -0.39 0.24 16 39 H 0.34 4.33 8.34 -39.30 -0.33 4.00 16 40 H 0.07 0.92 7.38 -51.93 -0.38 0.53 16 41 H 0.03 0.33 8.00 -51.93 -0.42 -0.09 16 42 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 46 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 47 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -29.67 372.18 -9.74 -39.41 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.03 Total: 5.56 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -2.37 Total: -27.05 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.08 Total: -33.99 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.67 -9.74 -39.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158903253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.109 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds