Wall clock time and date at job start Tue Mar 31 2020 07:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47308 * 2 1 4 4 C 1.53005 * 109.47112 * 239.99814 * 2 1 3 5 5 C 1.52998 * 109.46854 * 300.00390 * 4 2 1 6 6 C 1.53004 * 109.47025 * 299.99216 * 5 4 2 7 7 C 1.53005 * 109.46664 * 60.00667 * 6 5 4 8 8 H 1.08992 * 109.47523 * 59.99939 * 7 6 5 9 9 N 1.46903 * 109.47071 * 180.02562 * 7 6 5 10 10 C 1.46904 * 110.99514 * 274.99944 * 9 7 6 11 11 C 1.50700 * 109.46763 * 179.97438 * 10 9 7 12 12 C 1.38309 * 119.93136 * 89.99913 * 11 10 9 13 13 C 1.38098 * 120.07021 * 179.97438 * 12 11 10 14 14 C 1.38875 * 119.93063 * 0.02562 * 13 12 11 15 15 O 1.35755 * 120.06689 * 180.02562 * 14 13 12 16 16 C 1.34822 * 117.00038 * 5.53796 * 15 14 13 17 17 H 1.08004 * 120.00470 * 354.93584 * 16 15 14 18 18 C 1.38660 * 120.00300 * 174.94514 * 16 15 14 19 19 N 1.31556 * 119.99320 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00472 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47242 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47289 * 300.00240 * 20 18 16 23 23 H 1.48504 * 109.46819 * 59.99609 * 20 18 16 24 24 C 1.38883 * 119.86225 * 0.27186 * 14 13 12 25 25 C 1.38101 * 119.92844 * 359.45102 * 24 14 13 26 26 C 1.53002 * 109.47186 * 299.99566 * 7 6 5 27 27 H 1.09001 * 109.47099 * 299.99914 * 1 2 3 28 28 H 1.09000 * 109.47590 * 60.00160 * 1 2 3 29 29 H 1.09002 * 109.47326 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47194 * 180.02562 * 3 2 1 31 31 H 1.09010 * 109.46501 * 299.99901 * 3 2 1 32 32 H 1.08998 * 109.47240 * 59.99556 * 3 2 1 33 33 H 1.09000 * 109.46871 * 59.99586 * 4 2 1 34 34 H 1.08999 * 109.47299 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47804 * 59.99530 * 5 4 2 36 36 H 1.08998 * 109.46909 * 180.02562 * 5 4 2 37 37 H 1.09003 * 109.47582 * 300.00720 * 6 5 4 38 38 H 1.09002 * 109.47321 * 180.02562 * 6 5 4 39 39 H 1.00893 * 111.00134 * 151.04287 * 9 7 6 40 40 H 1.09000 * 109.47330 * 60.00191 * 10 9 7 41 41 H 1.08997 * 109.46987 * 299.99125 * 10 9 7 42 42 H 1.08001 * 119.96001 * 359.97438 * 12 11 10 43 43 H 1.08000 * 120.03090 * 179.97438 * 13 12 11 44 44 H 0.97008 * 119.99684 * 180.02562 * 19 18 16 45 45 H 1.07997 * 120.02924 * 179.72630 * 24 14 13 46 46 H 1.08000 * 119.96205 * 180.27275 * 25 24 14 47 47 H 1.08998 * 109.47240 * 179.97438 * 26 7 6 48 48 H 1.08999 * 109.47533 * 300.00507 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5299 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2494 9 7 2.0202 -2.8558 2.4488 10 6 1.1369 -3.9727 2.8099 11 6 1.6710 -4.6574 4.0416 12 6 1.2676 -4.2354 5.2955 13 6 1.7548 -4.8611 6.4260 14 6 2.6511 -5.9148 6.3031 15 8 3.1314 -6.5322 7.4126 16 6 2.6127 -6.1520 8.5976 17 1 1.9107 -5.3324 8.6419 18 6 2.9805 -6.8132 9.7596 19 7 3.8353 -7.8118 9.7056 20 14 2.2624 -6.2861 11.4014 21 1 2.8113 -7.1458 12.4807 22 1 2.6201 -4.8694 11.6663 23 1 0.7843 -6.4244 11.3625 24 6 3.0590 -6.3321 5.0428 25 6 2.5638 -5.7061 3.9159 26 6 2.0400 -0.7212 1.2493 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6765 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 0.4399 -2.1638 -1.2491 36 1 1.8936 -2.6777 -2.1389 37 1 3.1300 -2.8850 0.0000 38 1 1.6769 -3.9128 -0.0001 39 1 2.1245 -2.2134 3.2197 40 1 1.0976 -4.6858 1.9865 41 1 0.1349 -3.5934 3.0104 42 1 0.5708 -3.4157 5.3904 43 1 1.4397 -4.5308 7.4048 44 1 4.0924 -8.2746 10.5185 45 1 3.7594 -7.1483 4.9442 46 1 2.8773 -6.0331 2.9355 47 1 1.6763 -0.2072 2.1390 48 1 3.1300 -0.7212 1.2492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158903253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:23 Heat of formation + Delta-G solvation = -47.714117 kcal Electronic energy + Delta-G solvation = -24321.053455 eV Core-core repulsion = 20953.435409 eV Total energy + Delta-G solvation = -3367.618046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87620 -40.52352 -38.55831 -36.36721 -34.31850 -33.49040 -31.90357 -31.72575 -29.29205 -28.18390 -27.41613 -27.23378 -25.25102 -23.61210 -23.10281 -21.99199 -21.41320 -19.83676 -19.26845 -18.83062 -16.96208 -16.47582 -16.36970 -16.14450 -15.87783 -15.60424 -15.52583 -15.43376 -15.18200 -14.85768 -14.38710 -14.31610 -14.13640 -13.79846 -13.68542 -13.36152 -13.26987 -12.93874 -12.86218 -12.73795 -12.43922 -12.36347 -12.29974 -12.16496 -12.12334 -11.99614 -11.90918 -11.77894 -11.22693 -11.16771 -10.93462 -10.83025 -10.75831 -9.76797 -9.27548 -8.89012 -8.46698 -6.14978 0.61457 0.68942 1.34657 1.45554 1.51188 2.18118 2.78845 3.10779 3.40938 3.53874 3.76118 3.78161 4.02677 4.05771 4.07385 4.20543 4.29535 4.31486 4.45229 4.49792 4.51164 4.57124 4.61403 4.63455 4.75019 4.79135 4.81380 4.85615 4.91082 5.01324 5.09569 5.10126 5.14274 5.15664 5.20203 5.22599 5.24135 5.32093 5.37450 5.42062 5.49359 5.52284 5.58844 5.69147 5.72119 5.83090 6.03257 6.18831 6.28595 6.53611 6.97780 7.79310 8.76469 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.002375 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.255403 B =11785.903779 C =12301.141433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.105 4.105 7 C 0.090 3.910 8 H 0.048 0.952 9 N -0.691 5.691 10 C 0.124 3.876 11 C -0.157 4.157 12 C -0.062 4.062 13 C -0.242 4.242 14 C 0.113 3.887 15 O -0.233 6.233 16 C -0.414 4.414 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.272 1.272 22 H -0.257 1.257 23 H -0.257 1.257 24 C -0.206 4.206 25 C -0.048 4.048 26 C -0.106 4.106 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.341 0.659 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.137 0.863 43 H 0.118 0.882 44 H 0.273 0.727 45 H 0.111 0.889 46 H 0.142 0.858 47 H 0.059 0.941 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.120 16.998 -21.314 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.061 4.061 3 C -0.197 4.197 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.143 4.143 7 C -0.019 4.019 8 H 0.066 0.934 9 N -0.323 5.323 10 C -0.004 4.004 11 C -0.158 4.158 12 C -0.081 4.081 13 C -0.262 4.262 14 C 0.063 3.937 15 O -0.140 6.140 16 C -0.490 4.490 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.196 1.196 22 H -0.181 1.181 23 H -0.182 1.182 24 C -0.226 4.226 25 C -0.066 4.066 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.159 0.841 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.155 0.845 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.159 0.841 47 H 0.078 0.922 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.415 16.286 -21.509 27.980 hybrid contribution -0.565 0.159 1.547 1.655 sum -7.980 16.445 -19.962 27.067 Atomic orbital electron populations 1.21973 0.94369 1.01958 1.01823 1.20489 0.95851 0.95194 0.94553 1.21850 1.00916 0.94980 1.02002 1.21585 1.00373 0.95227 0.97157 1.21566 1.01060 0.95641 0.97292 1.21504 1.00697 0.98599 0.93522 1.21586 0.97165 0.92910 0.90273 0.93430 1.60538 1.51134 1.12889 1.07715 1.20620 0.93054 0.93063 0.93650 1.19633 1.02180 0.99519 0.94431 1.20938 0.97927 0.98109 0.91105 1.21221 1.04251 1.00589 1.00096 1.19946 0.93141 0.92455 0.88175 1.83942 1.58268 1.58530 1.13262 1.21783 1.27144 1.18042 0.82078 0.88136 1.26610 0.96902 0.95435 1.03190 1.70186 1.33033 1.22199 1.30548 0.84645 0.78650 0.78729 0.74167 1.19617 1.18128 1.18159 1.20461 1.06890 1.04949 0.90273 1.20821 0.94556 0.94289 0.96964 1.21726 1.00851 0.93897 0.97878 0.93023 0.92042 0.92307 0.92850 0.91928 0.92758 0.91201 0.92388 0.91431 0.91468 0.92590 0.92702 0.84074 0.90151 0.94035 0.84474 0.86399 0.91847 0.87132 0.84066 0.92214 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 7.78 71.98 0.56 -1.16 16 2 C -0.06 -0.77 0.77 -52.18 -0.04 -0.81 16 3 C -0.14 -1.65 8.47 71.98 0.61 -1.04 16 4 C -0.11 -1.32 4.73 30.60 0.14 -1.17 16 5 C -0.12 -1.56 5.65 30.60 0.17 -1.39 16 6 C -0.10 -1.80 5.43 30.60 0.17 -1.63 16 7 C 0.09 1.57 2.22 44.92 0.10 1.67 16 8 H 0.05 0.82 6.09 -2.39 -0.01 0.81 16 9 N -0.69 -15.21 6.30 -495.56 -3.12 -18.33 16 10 C 0.12 2.92 5.61 85.56 0.48 3.39 16 11 C -0.16 -4.92 5.40 -19.83 -0.11 -5.02 16 12 C -0.06 -2.14 9.69 22.25 0.22 -1.92 16 13 C -0.24 -10.67 9.17 22.39 0.21 -10.46 16 14 C 0.11 5.76 6.65 22.58 0.15 5.91 16 15 O -0.23 -14.34 9.76 -22.72 -0.22 -14.56 16 16 C -0.41 -24.49 9.49 67.92 0.64 -23.85 16 17 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 18 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 19 N -0.92 -57.32 13.67 21.61 0.30 -57.03 16 20 Si 1.02 43.23 29.55 68.60 2.03 45.26 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 C -0.21 -9.08 9.99 22.39 0.22 -8.86 16 25 C -0.05 -1.67 9.69 22.25 0.22 -1.45 16 26 C -0.11 -1.67 4.00 30.60 0.12 -1.55 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.74 4.81 -2.39 -0.01 0.73 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.84 6.43 -2.39 -0.02 0.83 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 0.99 7.46 -2.39 -0.02 0.97 16 39 H 0.34 7.62 8.34 -89.70 -0.75 6.88 16 40 H 0.08 1.78 7.38 -2.39 -0.02 1.76 16 41 H 0.04 0.89 8.00 -2.39 -0.02 0.87 16 42 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 43 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 44 H 0.27 15.54 8.31 -92.70 -0.77 14.76 16 45 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 46 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 47 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 48 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.46 372.18 3.50 -64.96 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.19 Total: 29.96 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 4.33 Total: -50.26 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -2.83 Total: -75.36 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.22 Total: -14.56 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.46 3.50 -64.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158903253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.250 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds