Wall clock time and date at job start Tue Mar 31 2020 08:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47337 * 295.00177 * 4 2 1 6 6 C 1.38229 * 120.00000 * 269.72987 * 5 4 2 7 7 C 1.38244 * 119.99905 * 179.76688 * 6 5 4 8 8 C 1.38238 * 119.99810 * 0.48121 * 7 6 5 9 9 C 1.50696 * 119.99633 * 179.77245 * 8 7 6 10 10 C 1.50703 * 109.46699 * 270.01773 * 9 8 7 11 11 O 1.21277 * 120.00187 * 0.02562 * 10 9 8 12 12 N 1.34786 * 119.99575 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99524 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46879 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47085 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47337 * 179.97438 * 15 14 13 17 17 H 1.08009 * 119.99769 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00389 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99758 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00245 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46781 * 90.00235 * 20 18 16 22 22 H 1.48493 * 109.47360 * 209.99950 * 20 18 16 23 23 H 1.48505 * 109.47028 * 330.00763 * 20 18 16 24 24 C 1.38228 * 119.99924 * 359.79100 * 8 7 6 25 25 C 1.38235 * 119.99690 * 89.99755 * 5 4 2 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 35 35 H 1.07998 * 120.00278 * 359.97438 * 6 5 4 36 36 H 1.07998 * 119.99690 * 180.25287 * 7 6 5 37 37 H 1.08993 * 109.47401 * 30.01835 * 9 8 7 38 38 H 1.09003 * 109.46743 * 150.02272 * 9 8 7 39 39 H 0.96994 * 120.00024 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.47154 * 299.99937 * 13 12 10 41 41 H 1.09003 * 109.47349 * 60.00329 * 13 12 10 42 42 H 1.09002 * 109.47110 * 299.99883 * 14 13 12 43 43 H 1.09003 * 109.46928 * 59.99990 * 14 13 12 44 44 H 1.09002 * 109.47196 * 300.00008 * 15 14 13 45 45 H 1.09003 * 109.47101 * 60.00273 * 15 14 13 46 46 H 0.97001 * 119.99827 * 179.97438 * 19 18 16 47 47 H 1.08001 * 120.00324 * 179.97438 * 24 8 7 48 48 H 1.07992 * 120.00469 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 2.4839 -3.0975 -0.6000 7 6 2.1160 -4.4287 -0.5404 8 6 0.9100 -4.8373 -1.0785 9 6 0.5113 -6.2893 -1.0181 10 6 1.0136 -6.9997 -2.2485 11 8 1.6346 -6.3873 -3.0913 12 7 0.7727 -8.3157 -2.4124 13 6 1.2615 -9.0064 -3.6083 14 6 0.8556 -10.4803 -3.5476 15 6 1.3655 -11.2016 -4.7969 16 6 0.9662 -12.6535 -4.7369 17 1 0.4045 -13.0246 -3.8923 18 6 1.3170 -13.5079 -5.7605 19 7 2.0006 -13.0559 -6.7891 20 14 0.8227 -15.3077 -5.6858 21 1 -0.5050 -15.4834 -6.3275 22 1 1.8314 -16.1284 -6.4027 23 1 0.7483 -15.7421 -4.2676 24 6 0.0700 -3.9140 -1.6724 25 6 0.4356 -2.5819 -1.7274 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6055 -0.2618 -2.1370 34 1 3.1264 -0.6443 -1.2951 35 1 3.4281 -2.7790 -0.1835 36 1 2.7725 -5.1501 -0.0766 37 1 0.9459 -6.7487 -0.1304 38 1 -0.5750 -6.3661 -0.9722 39 1 0.2757 -8.8053 -1.7386 40 1 0.8277 -8.5466 -4.4963 41 1 2.3479 -8.9300 -3.6535 42 1 1.2891 -10.9404 -2.6596 43 1 -0.2309 -10.5564 -3.5027 44 1 0.9316 -10.7415 -5.6847 45 1 2.4519 -11.1256 -4.8423 46 1 2.2477 -13.6571 -7.5091 47 1 -0.8720 -4.2331 -2.0932 48 1 -0.2206 -1.8606 -2.1917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171505035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:25 Heat of formation + Delta-G solvation = -58.862945 kcal Electronic energy + Delta-G solvation = -23193.774890 eV Core-core repulsion = 19825.673394 eV Total energy + Delta-G solvation = -3368.101495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.12792 -39.06502 -36.61764 -35.36079 -33.32522 -32.93379 -31.23094 -31.03388 -29.18737 -27.49536 -26.79802 -25.29334 -23.03471 -22.83100 -21.35929 -20.70326 -20.24516 -19.79945 -16.88903 -16.58203 -16.32123 -16.01676 -15.59735 -15.24258 -14.92688 -14.77114 -14.60370 -14.43908 -13.95238 -13.68924 -13.54058 -13.47341 -12.70340 -12.58588 -12.39117 -12.32576 -12.26678 -12.03464 -11.85358 -11.68303 -11.59574 -11.20832 -11.07638 -10.92876 -10.90593 -10.85882 -10.73478 -10.59967 -9.87781 -9.87086 -9.38862 -9.12726 -8.95767 -8.75576 -8.57332 -8.37815 -6.02298 -4.05572 1.21881 1.35465 2.81601 3.30296 3.34714 3.37003 3.39943 3.78807 4.42982 4.43881 4.50483 4.60602 4.63358 4.72219 4.91912 4.98530 5.05199 5.05783 5.26399 5.28923 5.32180 5.33443 5.34781 5.41581 5.49192 5.55469 5.58008 5.65979 5.72545 5.75563 5.78104 5.94031 5.96353 5.98938 6.03421 6.16419 6.32223 6.50103 6.51182 6.52344 6.59776 6.83761 6.92735 7.00296 7.62904 7.73437 7.75524 7.96341 8.36822 8.43898 9.01094 9.58680 11.08953 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.051411 B = 0.001769 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.501594 B =15825.594725 C =15959.101749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.082 4.082 6 C -0.117 4.117 7 C -0.102 4.102 8 C -0.066 4.066 9 C -0.104 4.104 10 C 0.507 3.493 11 O -0.535 6.535 12 N -0.728 5.728 13 C 0.117 3.883 14 C -0.120 4.120 15 C 0.023 3.977 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.103 4.103 25 C -0.115 4.115 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.398 0.602 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.261 0.739 47 H 0.119 0.881 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 25.795 17.026 31.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.114 4.114 5 C -0.083 4.083 6 C -0.135 4.135 7 C -0.121 4.121 8 C -0.066 4.066 9 C -0.144 4.144 10 C 0.293 3.707 11 O -0.412 6.412 12 N -0.380 5.380 13 C -0.006 4.006 14 C -0.158 4.158 15 C -0.015 4.015 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.121 4.121 25 C -0.133 4.133 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.232 0.768 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.071 0.929 47 H 0.137 0.863 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.744 26.177 16.226 30.920 hybrid contribution -0.464 -1.417 0.182 1.503 sum -3.208 24.759 16.408 29.875 Atomic orbital electron populations 1.21924 0.95161 1.02277 1.01433 1.21081 0.96157 0.95740 0.97966 1.21857 1.00950 0.95941 1.01774 1.20679 1.01104 0.91267 0.98312 1.19799 0.94693 0.95335 0.98423 1.20936 0.99377 0.92931 1.00260 1.20952 0.95602 0.95887 0.99615 1.19262 0.95058 0.93601 0.98674 1.20701 1.03083 0.92898 0.97740 1.20495 0.80200 0.82211 0.87844 1.90726 1.40184 1.65992 1.44300 1.46231 1.57667 1.09313 1.24763 1.21630 0.99268 0.93473 0.86237 1.21886 1.00510 0.91456 1.01994 1.19035 0.96674 0.94553 0.91193 1.21206 1.35305 0.94109 1.05519 0.92645 1.25031 0.95147 0.98822 0.95463 1.69967 1.38576 1.35494 1.09195 0.86578 0.78254 0.84963 0.78090 1.20660 1.21197 1.19897 1.20956 0.99650 0.93024 0.98513 1.20943 0.96416 0.95645 1.00262 0.92791 0.92014 0.92988 0.91150 0.92703 0.92694 0.92656 0.91061 0.91078 0.86334 0.86312 0.88113 0.88115 0.76846 0.91872 0.91867 0.92739 0.92746 0.96284 0.96276 0.92928 0.86316 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.76 37.16 0.33 -0.66 16 2 C -0.09 -0.60 2.91 -90.62 -0.26 -0.86 16 3 C -0.15 -0.82 9.19 37.16 0.34 -0.48 16 4 C -0.08 -0.58 4.84 -27.89 -0.13 -0.71 16 5 C -0.08 -0.81 4.71 -104.63 -0.49 -1.30 16 6 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 7 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 8 C -0.07 -0.75 4.37 -104.63 -0.46 -1.21 16 9 C -0.10 -1.05 5.83 -29.04 -0.17 -1.22 16 10 C 0.51 7.37 7.82 -10.98 -0.09 7.28 16 11 O -0.54 -10.24 16.03 5.56 0.09 -10.15 16 12 N -0.73 -10.23 5.56 -60.29 -0.33 -10.56 16 13 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 14 C -0.12 -2.35 5.27 -26.73 -0.14 -2.50 16 15 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 16 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 20 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 25 C -0.11 -1.16 7.96 -39.58 -0.32 -1.48 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.46 6.27 -51.93 -0.33 0.13 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.40 4.33 8.47 -40.82 -0.35 3.99 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.12 1.00 8.04 -52.49 -0.42 0.58 16 LS Contribution 394.78 15.07 5.95 5.95 Total: -1.00 -33.26 394.78 -10.35 -43.61 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.66 Total: -0.49 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -3.12 Total: -18.70 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.40 Total: -36.70 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.26 -10.35 -43.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.248 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds