Wall clock time and date at job start Tue Mar 31 2020 08:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47337 * 295.00177 * 4 2 1 6 6 C 1.38229 * 120.00000 * 269.72987 * 5 4 2 7 7 C 1.38244 * 119.99905 * 179.76688 * 6 5 4 8 8 C 1.38238 * 119.99810 * 0.48121 * 7 6 5 9 9 C 1.50696 * 119.99633 * 179.77245 * 8 7 6 10 10 C 1.50703 * 109.46699 * 270.01773 * 9 8 7 11 11 O 1.21277 * 120.00187 * 0.02562 * 10 9 8 12 12 N 1.34786 * 119.99575 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99524 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46879 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47085 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47337 * 179.97438 * 15 14 13 17 17 H 1.08009 * 119.99769 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00389 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99758 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00245 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46781 * 90.00235 * 20 18 16 22 22 H 1.48493 * 109.47360 * 209.99950 * 20 18 16 23 23 H 1.48505 * 109.47028 * 330.00763 * 20 18 16 24 24 C 1.38228 * 119.99924 * 359.79100 * 8 7 6 25 25 C 1.38235 * 119.99690 * 89.99755 * 5 4 2 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 35 35 H 1.07998 * 120.00278 * 359.97438 * 6 5 4 36 36 H 1.07998 * 119.99690 * 180.25287 * 7 6 5 37 37 H 1.08993 * 109.47401 * 30.01835 * 9 8 7 38 38 H 1.09003 * 109.46743 * 150.02272 * 9 8 7 39 39 H 0.96994 * 120.00024 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.47154 * 299.99937 * 13 12 10 41 41 H 1.09003 * 109.47349 * 60.00329 * 13 12 10 42 42 H 1.09002 * 109.47110 * 299.99883 * 14 13 12 43 43 H 1.09003 * 109.46928 * 59.99990 * 14 13 12 44 44 H 1.09002 * 109.47196 * 300.00008 * 15 14 13 45 45 H 1.09003 * 109.47101 * 60.00273 * 15 14 13 46 46 H 0.97001 * 119.99827 * 179.97438 * 19 18 16 47 47 H 1.08001 * 120.00324 * 179.97438 * 24 8 7 48 48 H 1.07992 * 120.00469 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 2.4839 -3.0975 -0.6000 7 6 2.1160 -4.4287 -0.5404 8 6 0.9100 -4.8373 -1.0785 9 6 0.5113 -6.2893 -1.0181 10 6 1.0136 -6.9997 -2.2485 11 8 1.6346 -6.3873 -3.0913 12 7 0.7727 -8.3157 -2.4124 13 6 1.2615 -9.0064 -3.6083 14 6 0.8556 -10.4803 -3.5476 15 6 1.3655 -11.2016 -4.7969 16 6 0.9662 -12.6535 -4.7369 17 1 0.4045 -13.0246 -3.8923 18 6 1.3170 -13.5079 -5.7605 19 7 2.0006 -13.0559 -6.7891 20 14 0.8227 -15.3077 -5.6858 21 1 -0.5050 -15.4834 -6.3275 22 1 1.8314 -16.1284 -6.4027 23 1 0.7483 -15.7421 -4.2676 24 6 0.0700 -3.9140 -1.6724 25 6 0.4356 -2.5819 -1.7274 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6055 -0.2618 -2.1370 34 1 3.1264 -0.6443 -1.2951 35 1 3.4281 -2.7790 -0.1835 36 1 2.7725 -5.1501 -0.0766 37 1 0.9459 -6.7487 -0.1304 38 1 -0.5750 -6.3661 -0.9722 39 1 0.2757 -8.8053 -1.7386 40 1 0.8277 -8.5466 -4.4963 41 1 2.3479 -8.9300 -3.6535 42 1 1.2891 -10.9404 -2.6596 43 1 -0.2309 -10.5564 -3.5027 44 1 0.9316 -10.7415 -5.6847 45 1 2.4519 -11.1256 -4.8423 46 1 2.2477 -13.6571 -7.5091 47 1 -0.8720 -4.2331 -2.0932 48 1 -0.2206 -1.8606 -2.1917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171505035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:24 Heat of formation + Delta-G solvation = -76.863715 kcal Electronic energy + Delta-G solvation = -23194.555462 eV Core-core repulsion = 19825.673394 eV Total energy + Delta-G solvation = -3368.882067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.08392 -40.05221 -37.31455 -36.83633 -35.17552 -33.80593 -32.92753 -31.80194 -30.11061 -28.41991 -27.96993 -26.26962 -24.72812 -23.60606 -22.30861 -22.23058 -21.08482 -20.77445 -18.57287 -17.92969 -17.37437 -16.97269 -16.67504 -16.45106 -16.32107 -15.83752 -15.58846 -15.19523 -15.15895 -14.77649 -14.32879 -14.25425 -14.21983 -13.77197 -13.63803 -13.31193 -13.15492 -13.06258 -12.88856 -12.74607 -12.59272 -12.55180 -12.39331 -12.30932 -11.83549 -11.69341 -11.67600 -11.59169 -11.49248 -11.48119 -11.24632 -10.85735 -10.56011 -10.07324 -9.74489 -9.36208 -8.19876 -6.31745 0.42593 0.56385 1.41680 1.43138 1.54161 1.68285 2.25789 2.42834 2.92991 3.13869 3.70705 3.88260 3.89726 4.05917 4.06634 4.10915 4.19325 4.20501 4.24741 4.36669 4.42505 4.54737 4.59516 4.65782 4.69072 4.79308 4.84380 4.88065 4.93892 4.97245 5.00997 5.07773 5.08754 5.16400 5.18436 5.23641 5.35162 5.45087 5.45580 5.48886 5.53209 5.56099 5.69710 5.71518 5.77787 5.83435 6.17012 6.21473 6.63264 6.85945 7.31984 7.38141 8.92204 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.051411 B = 0.001769 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.501594 B =15825.594725 C =15959.101749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.086 4.086 6 C -0.129 4.129 7 C -0.118 4.118 8 C -0.085 4.085 9 C -0.092 4.092 10 C 0.506 3.494 11 O -0.587 6.587 12 N -0.716 5.716 13 C 0.130 3.870 14 C -0.101 4.101 15 C 0.022 3.978 16 C -0.542 4.542 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.260 1.260 24 C -0.119 4.119 25 C -0.123 4.123 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.417 0.583 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.069 0.931 44 H -0.009 1.009 45 H -0.009 1.009 46 H 0.263 0.737 47 H 0.127 0.873 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.468 25.749 19.065 32.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.112 4.112 5 C -0.086 4.086 6 C -0.147 4.147 7 C -0.136 4.136 8 C -0.086 4.086 9 C -0.132 4.132 10 C 0.294 3.706 11 O -0.467 6.467 12 N -0.369 5.369 13 C 0.006 3.994 14 C -0.139 4.139 15 C -0.016 4.016 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.184 1.184 24 C -0.137 4.137 25 C -0.141 4.141 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.254 0.746 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.009 0.991 45 H 0.009 0.991 46 H 0.072 0.928 47 H 0.145 0.855 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.955 26.124 18.315 32.149 hybrid contribution -0.071 -1.328 -0.471 1.411 sum -4.025 24.796 17.844 30.814 Atomic orbital electron populations 1.21909 0.95104 1.01734 1.01922 1.21044 0.96168 0.96236 0.97143 1.21836 1.01151 0.95141 1.02175 1.20706 1.01399 0.90072 0.98976 1.20076 0.94452 0.96392 0.97696 1.21207 1.00131 0.92946 1.00410 1.21203 0.95857 0.96557 0.99990 1.19491 0.95432 0.94393 0.99240 1.20722 1.04817 0.91612 0.96006 1.21305 0.78958 0.81820 0.88520 1.90709 1.42510 1.67002 1.46440 1.46002 1.57534 1.09451 1.23894 1.21182 0.98127 0.92709 0.87403 1.21592 1.01155 0.91768 0.99366 1.18961 0.94862 0.94679 0.93083 1.21691 1.35176 0.95228 1.05890 0.91427 1.26040 0.95020 1.04078 0.95010 1.70118 1.39940 1.37377 1.10115 0.85396 0.77929 0.78618 0.78777 1.19810 1.21073 1.18350 1.21210 1.00212 0.93551 0.98710 1.21179 0.96866 0.95788 1.00276 0.92401 0.93032 0.92415 0.91630 0.92163 0.92398 0.92400 0.90762 0.90693 0.84953 0.85514 0.85257 0.85244 0.74563 0.93648 0.93642 0.91256 0.91247 0.99094 0.99087 0.92839 0.85506 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.76 71.98 0.63 -1.15 16 2 C -0.09 -1.05 2.91 -10.79 -0.03 -1.08 16 3 C -0.15 -1.40 9.19 71.98 0.66 -0.73 16 4 C -0.07 -1.05 4.84 29.85 0.14 -0.91 16 5 C -0.09 -1.63 4.71 -19.87 -0.09 -1.72 16 6 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 7 C -0.12 -2.54 9.70 22.27 0.22 -2.33 16 8 C -0.09 -1.86 4.37 -19.87 -0.09 -1.95 16 9 C -0.09 -1.65 5.83 29.10 0.17 -1.48 16 10 C 0.51 14.15 7.82 87.66 0.69 14.84 16 11 O -0.59 -22.65 16.03 -3.02 -0.05 -22.70 16 12 N -0.72 -19.03 5.56 -463.04 -2.57 -21.60 16 13 C 0.13 4.64 5.67 86.38 0.49 5.13 16 14 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 15 C 0.02 1.15 4.97 29.85 0.15 1.29 16 16 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 17 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 19 N -0.94 -57.41 13.29 21.44 0.28 -57.13 16 20 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 C -0.12 -2.54 9.70 22.27 0.22 -2.33 16 25 C -0.12 -2.42 7.96 22.27 0.18 -2.24 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.72 6.27 -2.39 -0.01 0.70 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 34 H 0.07 1.00 8.08 -2.38 -0.02 0.98 16 35 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 38 H 0.13 1.58 8.09 -2.39 -0.02 1.57 16 39 H 0.42 7.89 8.47 -92.71 -0.79 7.10 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 45 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 46 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 47 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 48 H 0.13 2.12 8.04 -2.91 -0.02 2.09 16 Total: -1.00 -73.38 394.78 4.21 -69.16 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.12 Total: 17.02 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 4.40 Total: -30.56 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -2.29 Total: -78.73 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.05 Total: -22.70 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -73.38 4.21 -69.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.700 kcal (2) G-P(sol) polarization free energy of solvation -73.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds