Wall clock time and date at job start Tue Mar 31 2020 09:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47001 * 2 1 4 4 C 1.53000 * 109.46627 * 239.99822 * 2 1 3 5 5 C 1.50695 * 109.47172 * 60.00591 * 4 2 1 6 6 H 1.08006 * 120.00136 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00109 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99992 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99867 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47125 * 90.00612 * 9 7 5 11 11 H 1.48504 * 109.47290 * 210.00184 * 9 7 5 12 12 H 1.48503 * 109.47253 * 330.00128 * 9 7 5 13 13 C 1.53006 * 109.46878 * 120.00185 * 2 1 3 14 14 N 1.46904 * 109.46917 * 299.99500 * 13 2 1 15 15 C 1.46897 * 110.99586 * 180.02562 * 14 13 2 16 16 C 1.53003 * 109.47135 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.43597 * 55.34247 * 16 15 14 18 18 C 1.53070 * 109.40041 * 295.45390 * 16 15 14 19 19 C 1.53406 * 108.29902 * 191.76533 * 18 16 15 20 20 O 1.42829 * 108.37799 * 64.71473 * 19 18 16 21 21 C 1.35836 * 117.85789 * 310.81596 * 20 19 18 22 22 C 1.39145 * 118.50252 * 197.07033 * 21 20 19 23 23 C 1.37962 * 120.21968 * 180.29410 * 22 21 20 24 24 C 1.38291 * 119.96067 * 359.70807 * 23 22 21 25 25 C 1.38105 * 119.97976 * 0.43931 * 24 23 22 26 26 C 1.38375 * 121.80786 * 17.20624 * 21 20 19 27 27 H 1.09007 * 109.46856 * 299.99967 * 1 2 3 28 28 H 1.08991 * 109.47209 * 59.99727 * 1 2 3 29 29 H 1.08995 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46889 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47433 * 299.99733 * 3 2 1 32 32 H 1.08999 * 109.47614 * 60.00277 * 3 2 1 33 33 H 1.09003 * 109.46509 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47153 * 299.99856 * 4 2 1 35 35 H 0.96994 * 119.99708 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46507 * 179.97438 * 13 2 1 37 37 H 1.08992 * 109.47377 * 60.00136 * 13 2 1 38 38 H 1.00896 * 111.00261 * 303.95934 * 14 13 2 39 39 H 1.08999 * 109.47719 * 59.99719 * 15 14 13 40 40 H 1.09004 * 109.47022 * 299.99905 * 15 14 13 41 41 H 1.09006 * 109.69197 * 311.46300 * 18 16 15 42 42 H 1.08993 * 109.69825 * 72.01841 * 18 16 15 43 43 H 1.09006 * 109.67995 * 184.43785 * 19 18 16 44 44 H 1.08998 * 109.68185 * 304.95334 * 19 18 16 45 45 H 1.07998 * 119.88779 * 0.31641 * 22 21 20 46 46 H 1.08003 * 120.02245 * 179.97438 * 23 22 21 47 47 H 1.07994 * 120.01258 * 180.18154 * 24 23 22 48 48 H 1.07999 * 119.84140 * 179.82196 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8711 -0.4816 -3.7319 8 7 1.4323 0.1381 -4.8058 9 14 2.9460 -1.9997 -3.9033 10 1 2.0882 -3.2110 -3.9490 11 1 3.7380 -1.9066 -5.1561 12 1 3.8664 -2.0883 -2.7413 13 6 2.0400 -0.7213 1.2493 14 7 1.5504 -0.0287 2.4487 15 6 2.0219 -0.6946 3.6703 16 6 1.4923 0.0533 4.8956 17 1 0.4062 0.1240 4.8360 18 6 2.0932 1.4607 4.9311 19 6 1.7902 2.0792 6.3019 20 8 2.4726 1.3187 7.2999 21 6 2.3383 -0.0327 7.2703 22 6 2.6784 -0.7588 8.4074 23 6 2.5615 -2.1335 8.4143 24 6 2.0992 -2.7929 7.2901 25 6 1.7635 -2.0757 6.1586 26 6 1.8785 -0.6955 6.1460 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7489 -1.2492 35 1 1.6672 -0.1929 -5.6867 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -1.7489 1.2493 38 1 1.8198 0.9435 2.4402 39 1 3.1117 -0.6942 3.6869 40 1 1.6586 -1.7222 3.6873 41 1 3.1717 1.4034 4.7841 42 1 1.6472 2.0705 4.1455 43 1 2.1396 3.1115 6.3241 44 1 0.7166 2.0510 6.4882 45 1 3.0348 -0.2446 9.2877 46 1 2.8268 -2.6940 9.2985 47 1 2.0046 -3.8686 7.2955 48 1 1.4054 -2.5932 5.2809 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174372395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:39 Heat of formation + Delta-G solvation = -33.470771 kcal Electronic energy + Delta-G solvation = -24862.592902 eV Core-core repulsion = 21495.592494 eV Total energy + Delta-G solvation = -3367.000408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.02172 -37.97417 -37.70788 -35.99089 -33.19122 -31.95548 -30.92266 -30.40746 -28.07769 -27.14415 -26.39809 -24.91395 -24.27505 -23.21519 -22.06635 -21.52399 -20.01116 -18.16552 -17.78580 -16.88734 -16.78392 -16.35682 -15.77010 -15.18155 -14.81254 -14.61089 -14.18706 -14.03750 -13.86105 -13.83731 -13.49031 -13.24954 -12.98582 -12.75566 -12.59217 -12.26107 -11.97230 -11.90340 -11.86978 -11.52651 -11.17568 -11.05684 -10.98025 -10.89565 -10.84427 -10.53694 -10.43639 -10.35715 -9.80338 -9.69768 -9.31320 -9.02235 -8.90590 -8.50297 -8.37267 -8.21509 -6.00632 -3.96810 1.08747 1.20699 3.05265 3.31700 3.39426 3.42687 3.52824 4.15562 4.36818 4.43678 4.47749 4.56363 4.69952 4.85327 4.91705 5.06196 5.11741 5.21112 5.22241 5.29170 5.32480 5.43245 5.54160 5.58904 5.65462 5.68024 5.74026 5.82473 5.88414 5.97664 6.06720 6.13308 6.22541 6.27184 6.32693 6.39370 6.55302 6.57051 6.67220 6.78133 7.05365 7.11138 7.17741 7.21716 7.26193 7.31648 7.44604 7.58269 7.84764 8.59081 9.05172 9.62555 11.12484 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025445 B = 0.002781 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.129240 B =10064.438011 C =10753.003202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.049 4.049 3 C -0.130 4.130 4 C -0.005 4.005 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.685 5.685 15 C 0.067 3.933 16 C -0.044 4.044 17 H 0.094 0.906 18 C -0.159 4.159 19 C 0.063 3.937 20 O -0.319 6.319 21 C 0.132 3.868 22 C -0.153 4.153 23 C -0.091 4.091 24 C -0.154 4.154 25 C -0.083 4.083 26 C -0.149 4.149 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.012 0.988 34 H 0.010 0.990 35 H 0.261 0.739 36 H 0.023 0.977 37 H 0.066 0.934 38 H 0.338 0.662 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -0.719 26.471 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.188 4.188 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.318 5.318 15 C -0.062 4.062 16 C -0.062 4.062 17 H 0.112 0.888 18 C -0.196 4.196 19 C -0.012 4.012 20 O -0.233 6.233 21 C 0.087 3.913 22 C -0.171 4.171 23 C -0.109 4.109 24 C -0.172 4.172 25 C -0.101 4.101 26 C -0.151 4.151 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.158 0.842 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.141 0.859 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.911 -0.923 26.394 26.426 hybrid contribution 1.466 -0.704 -0.514 1.706 sum 2.377 -1.627 25.880 26.040 Atomic orbital electron populations 1.21613 0.94503 1.00672 1.00686 1.20418 0.96210 0.95023 0.93246 1.21779 0.99597 0.96484 1.00908 1.19630 0.95806 0.95473 0.93332 1.21131 1.31421 1.13242 0.88675 0.90419 1.25019 0.95813 0.96743 0.96036 1.69909 1.46133 1.40658 0.97829 0.86847 0.81296 0.84051 0.77457 1.20432 1.21578 1.19206 1.22137 0.96320 0.98163 0.89517 1.60588 1.63621 1.06489 1.01062 1.21999 0.96984 0.98381 0.88831 1.20053 1.01432 0.93452 0.91272 0.88771 1.22333 1.02382 0.96890 0.98017 1.22978 0.96897 0.94882 0.86464 1.85976 1.68953 1.15225 1.53121 1.18709 0.96691 0.82674 0.93229 1.20580 1.05792 0.93899 0.96851 1.20916 0.98212 0.93345 0.98404 1.21047 1.02450 1.00032 0.93654 1.21030 0.97931 0.92748 0.98352 1.19822 1.05591 0.94731 0.94943 0.93698 0.92126 0.94229 0.94162 0.91106 0.94678 0.96973 0.97159 0.92887 0.95893 0.91561 0.84182 0.95369 0.90690 0.90598 0.89093 0.87451 0.91641 0.85444 0.85592 0.85918 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 2 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 3 C -0.13 -2.34 7.89 37.15 0.29 -2.04 16 4 C 0.00 -0.11 3.11 -27.89 -0.09 -0.19 16 5 C -0.51 -13.89 8.20 -34.44 -0.28 -14.17 16 6 H 0.08 2.27 5.92 -52.48 -0.31 1.96 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.69 13.96 55.43 0.77 -26.92 16 9 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.07 1.08 4.65 -3.82 -0.02 1.06 16 14 N -0.69 -9.04 5.71 -113.77 -0.65 -9.69 16 15 C 0.07 0.77 4.80 -3.82 -0.02 0.76 16 16 C -0.04 -0.44 2.58 -91.70 -0.24 -0.68 16 17 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 18 C -0.16 -1.43 4.95 -26.48 -0.13 -1.56 16 19 C 0.06 0.52 7.03 37.37 0.26 0.79 16 20 O -0.32 -3.48 10.27 -19.23 -0.20 -3.67 16 21 C 0.13 1.47 6.47 -39.19 -0.25 1.21 16 22 C -0.15 -1.50 9.94 -39.35 -0.39 -1.89 16 23 C -0.09 -0.78 10.04 -39.66 -0.40 -1.18 16 24 C -0.15 -1.38 10.04 -39.61 -0.40 -1.78 16 25 C -0.08 -0.83 9.09 -39.53 -0.36 -1.19 16 26 C -0.15 -1.61 5.43 -104.44 -0.57 -2.18 16 27 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 28 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 32 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 33 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 34 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.34 4.24 5.29 -39.29 -0.21 4.04 16 39 H 0.03 0.34 8.11 -51.93 -0.42 -0.08 16 40 H 0.07 0.86 6.31 -51.93 -0.33 0.53 16 41 H 0.08 0.74 8.08 -51.93 -0.42 0.33 16 42 H 0.09 0.74 7.25 -51.93 -0.38 0.37 16 43 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 47 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 48 H 0.13 1.16 6.39 -52.49 -0.34 0.83 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -30.44 365.53 -9.69 -40.13 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.98 Total: 1.79 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -2.48 Total: -24.21 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.12 Total: -36.61 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.20 Total: -3.67 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.44 -9.69 -40.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174372395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.663 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds