Wall clock time and date at job start Tue Mar 31 2020 09:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47001 * 2 1 4 4 C 1.53000 * 109.46627 * 239.99822 * 2 1 3 5 5 C 1.50695 * 109.47172 * 60.00591 * 4 2 1 6 6 H 1.08006 * 120.00136 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00109 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99992 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99867 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47125 * 90.00612 * 9 7 5 11 11 H 1.48504 * 109.47290 * 210.00184 * 9 7 5 12 12 H 1.48503 * 109.47253 * 330.00128 * 9 7 5 13 13 C 1.53006 * 109.46878 * 120.00185 * 2 1 3 14 14 N 1.46904 * 109.46917 * 299.99500 * 13 2 1 15 15 C 1.46897 * 110.99586 * 180.02562 * 14 13 2 16 16 C 1.53003 * 109.47135 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.43597 * 55.34247 * 16 15 14 18 18 C 1.53070 * 109.40041 * 295.45390 * 16 15 14 19 19 C 1.53406 * 108.29902 * 191.76533 * 18 16 15 20 20 O 1.42829 * 108.37799 * 64.71473 * 19 18 16 21 21 C 1.35836 * 117.85789 * 310.81596 * 20 19 18 22 22 C 1.39145 * 118.50252 * 197.07033 * 21 20 19 23 23 C 1.37962 * 120.21968 * 180.29410 * 22 21 20 24 24 C 1.38291 * 119.96067 * 359.70807 * 23 22 21 25 25 C 1.38105 * 119.97976 * 0.43931 * 24 23 22 26 26 C 1.38375 * 121.80786 * 17.20624 * 21 20 19 27 27 H 1.09007 * 109.46856 * 299.99967 * 1 2 3 28 28 H 1.08991 * 109.47209 * 59.99727 * 1 2 3 29 29 H 1.08995 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46889 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47433 * 299.99733 * 3 2 1 32 32 H 1.08999 * 109.47614 * 60.00277 * 3 2 1 33 33 H 1.09003 * 109.46509 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47153 * 299.99856 * 4 2 1 35 35 H 0.96994 * 119.99708 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46507 * 179.97438 * 13 2 1 37 37 H 1.08992 * 109.47377 * 60.00136 * 13 2 1 38 38 H 1.00896 * 111.00261 * 303.95934 * 14 13 2 39 39 H 1.08999 * 109.47719 * 59.99719 * 15 14 13 40 40 H 1.09004 * 109.47022 * 299.99905 * 15 14 13 41 41 H 1.09006 * 109.69197 * 311.46300 * 18 16 15 42 42 H 1.08993 * 109.69825 * 72.01841 * 18 16 15 43 43 H 1.09006 * 109.67995 * 184.43785 * 19 18 16 44 44 H 1.08998 * 109.68185 * 304.95334 * 19 18 16 45 45 H 1.07998 * 119.88779 * 0.31641 * 22 21 20 46 46 H 1.08003 * 120.02245 * 179.97438 * 23 22 21 47 47 H 1.07994 * 120.01258 * 180.18154 * 24 23 22 48 48 H 1.07999 * 119.84140 * 179.82196 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8711 -0.4816 -3.7319 8 7 1.4323 0.1381 -4.8058 9 14 2.9460 -1.9997 -3.9033 10 1 2.0882 -3.2110 -3.9490 11 1 3.7380 -1.9066 -5.1561 12 1 3.8664 -2.0883 -2.7413 13 6 2.0400 -0.7213 1.2493 14 7 1.5504 -0.0287 2.4487 15 6 2.0219 -0.6946 3.6703 16 6 1.4923 0.0533 4.8956 17 1 0.4062 0.1240 4.8360 18 6 2.0932 1.4607 4.9311 19 6 1.7902 2.0792 6.3019 20 8 2.4726 1.3187 7.2999 21 6 2.3383 -0.0327 7.2703 22 6 2.6784 -0.7588 8.4074 23 6 2.5615 -2.1335 8.4143 24 6 2.0992 -2.7929 7.2901 25 6 1.7635 -2.0757 6.1586 26 6 1.8785 -0.6955 6.1460 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7489 -1.2492 35 1 1.6672 -0.1929 -5.6867 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -1.7489 1.2493 38 1 1.8198 0.9435 2.4402 39 1 3.1117 -0.6942 3.6869 40 1 1.6586 -1.7222 3.6873 41 1 3.1717 1.4034 4.7841 42 1 1.6472 2.0705 4.1455 43 1 2.1396 3.1115 6.3241 44 1 0.7166 2.0510 6.4882 45 1 3.0348 -0.2446 9.2877 46 1 2.8268 -2.6940 9.2985 47 1 2.0046 -3.8686 7.2955 48 1 1.4054 -2.5932 5.2809 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174372395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:38 Heat of formation + Delta-G solvation = -50.498923 kcal Electronic energy + Delta-G solvation = -24863.331298 eV Core-core repulsion = 21495.592494 eV Total energy + Delta-G solvation = -3367.738804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.74533 -39.31689 -38.39860 -37.07970 -34.76757 -33.57168 -31.60257 -31.12184 -29.79077 -28.31700 -27.91592 -26.22371 -25.00428 -24.24747 -23.47170 -22.48981 -20.74073 -19.49441 -18.87241 -18.73388 -17.58138 -17.16138 -16.77094 -16.34113 -15.96460 -15.77051 -15.52664 -15.22429 -14.94403 -14.73386 -14.49945 -14.39054 -14.19521 -14.09960 -13.77738 -13.61099 -13.39472 -12.84926 -12.80121 -12.72185 -12.57534 -12.46120 -12.24387 -12.22938 -12.05893 -11.86219 -11.72294 -11.56039 -11.36108 -11.25542 -10.95030 -10.79404 -10.70087 -9.73690 -9.31225 -9.09775 -8.21861 -6.21943 0.37900 0.48870 1.35470 1.36988 1.47800 2.38500 2.39178 2.81594 3.13227 3.18422 3.63351 3.70786 3.83555 3.92987 4.10327 4.18532 4.23208 4.25737 4.32104 4.34799 4.42434 4.49999 4.54849 4.60738 4.71101 4.73242 4.78135 4.87581 4.90497 4.92786 5.02284 5.04311 5.08841 5.13049 5.18925 5.21380 5.37131 5.38019 5.45824 5.53317 5.56077 5.61668 5.63187 5.76524 5.82281 5.89253 6.08558 6.41710 6.50005 6.52103 6.85499 7.40555 8.94337 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025445 B = 0.002781 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.129240 B =10064.438011 C =10753.003202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.048 4.048 3 C -0.125 4.125 4 C -0.004 4.004 5 C -0.502 4.502 6 H 0.046 0.954 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.250 1.250 13 C 0.079 3.921 14 N -0.682 5.682 15 C 0.073 3.927 16 C -0.037 4.037 17 H 0.092 0.908 18 C -0.155 4.155 19 C 0.059 3.941 20 O -0.333 6.333 21 C 0.113 3.887 22 C -0.165 4.165 23 C -0.090 4.090 24 C -0.158 4.158 25 C -0.095 4.095 26 C -0.163 4.163 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.344 0.656 39 H 0.023 0.977 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.071 0.929 45 H 0.137 0.863 46 H 0.152 0.848 47 H 0.143 0.857 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 -1.887 28.900 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.048 4.048 3 C -0.182 4.182 4 C -0.042 4.042 5 C -0.540 4.540 6 H 0.064 0.936 7 C -0.195 4.195 8 N -0.597 5.597 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.174 1.174 13 C -0.050 4.050 14 N -0.314 5.314 15 C -0.056 4.056 16 C -0.055 4.055 17 H 0.110 0.890 18 C -0.193 4.193 19 C -0.015 4.015 20 O -0.248 6.248 21 C 0.068 3.932 22 C -0.184 4.184 23 C -0.108 4.108 24 C -0.176 4.176 25 C -0.113 4.113 26 C -0.165 4.165 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.042 0.958 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.119 0.881 43 H 0.145 0.855 44 H 0.089 0.911 45 H 0.155 0.845 46 H 0.170 0.830 47 H 0.161 0.839 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.676 -2.088 28.851 28.975 hybrid contribution 1.172 -0.287 -1.206 1.706 sum 2.848 -2.376 27.646 27.893 Atomic orbital electron populations 1.21513 0.94507 1.00390 1.00193 1.20347 0.96145 0.95415 0.92940 1.21699 0.99707 0.95891 1.00899 1.19606 0.95573 0.95429 0.93587 1.21427 1.30004 1.12160 0.90428 0.93630 1.25918 0.97617 1.00173 0.95811 1.70063 1.48306 1.42853 0.98438 0.85808 0.79721 0.80112 0.77875 1.19610 1.21500 1.17390 1.21867 0.96206 0.97864 0.89061 1.60521 1.63507 1.06726 1.00694 1.21970 0.96660 0.98547 0.88404 1.19960 1.01188 0.93906 0.90486 0.89012 1.22309 1.01764 0.96431 0.98797 1.23164 0.97258 0.95508 0.85590 1.85954 1.69485 1.15361 1.53987 1.18967 0.97440 0.82946 0.93886 1.20867 1.05869 0.94637 0.97001 1.21259 0.97180 0.93070 0.99247 1.21360 1.01739 1.01151 0.93352 1.21221 0.98247 0.92704 0.99107 1.19918 1.06257 0.95178 0.95108 0.91319 0.95353 0.94382 0.93877 0.94436 0.91350 0.97026 0.97063 0.92911 0.95798 0.91527 0.83585 0.95842 0.90520 0.91462 0.88063 0.85456 0.91089 0.84511 0.83002 0.83921 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.00 8.06 71.98 0.58 -3.42 16 2 C -0.05 -1.76 0.60 -52.18 -0.03 -1.79 16 3 C -0.12 -4.35 7.89 71.98 0.57 -3.78 16 4 C 0.00 -0.19 3.11 29.85 0.09 -0.09 16 5 C -0.50 -28.08 8.20 25.60 0.21 -27.87 16 6 H 0.05 2.79 5.92 -2.91 -0.02 2.77 16 7 C 0.00 0.03 5.47 84.65 0.46 0.49 16 8 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 9 Si 0.94 44.74 27.47 68.60 1.88 46.63 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 13 C 0.08 2.35 4.65 86.30 0.40 2.75 16 14 N -0.68 -16.26 5.71 -513.87 -2.93 -19.19 16 15 C 0.07 1.53 4.80 86.30 0.41 1.94 16 16 C -0.04 -0.69 2.58 -11.49 -0.03 -0.72 16 17 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 18 C -0.16 -2.51 4.95 30.75 0.15 -2.35 16 19 C 0.06 0.89 7.03 72.12 0.51 1.40 16 20 O -0.33 -6.89 10.27 -91.71 -0.94 -7.83 16 21 C 0.11 2.37 6.47 22.52 0.15 2.52 16 22 C -0.17 -3.01 9.94 22.42 0.22 -2.79 16 23 C -0.09 -1.35 10.04 22.22 0.22 -1.13 16 24 C -0.16 -2.49 10.04 22.25 0.22 -2.27 16 25 C -0.09 -1.75 9.09 22.30 0.20 -1.54 16 26 C -0.16 -3.29 5.43 -19.75 -0.11 -3.40 16 27 H 0.07 2.18 7.60 -2.38 -0.02 2.16 16 28 H 0.03 1.20 6.62 -2.39 -0.02 1.18 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.04 1.54 6.62 -2.39 -0.02 1.53 16 32 H 0.07 1.90 6.57 -2.39 -0.02 1.88 16 33 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 34 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 35 H 0.26 15.52 8.31 -92.71 -0.77 14.74 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.34 7.61 5.29 -89.70 -0.47 7.14 16 39 H 0.02 0.52 8.11 -2.39 -0.02 0.50 16 40 H 0.08 1.59 6.31 -2.38 -0.02 1.57 16 41 H 0.07 1.21 8.08 -2.38 -0.02 1.19 16 42 H 0.10 1.40 7.25 -2.39 -0.02 1.38 16 43 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 46 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 47 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 48 H 0.13 2.20 6.39 -2.91 -0.02 2.18 16 Total: -1.00 -66.55 365.53 2.95 -63.60 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.41 Total: 18.59 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 4.24 Total: -42.06 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -2.64 Total: -78.92 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.94 Total: -7.83 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Total: -66.55 2.95 -63.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174372395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.097 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds