Wall clock time and date at job start Tue Mar 31 2020 09:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47156 * 2 1 4 4 C 1.52999 * 109.47554 * 120.00617 * 2 1 3 5 5 C 1.50707 * 109.46772 * 299.99962 * 4 2 1 6 6 H 1.08000 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00017 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99756 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47206 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.47031 * 60.00126 * 9 7 5 12 12 H 1.48494 * 109.47207 * 300.00004 * 9 7 5 13 13 C 1.53004 * 109.46840 * 240.00323 * 2 1 3 14 14 N 1.46899 * 109.47092 * 59.99817 * 13 2 1 15 15 C 1.46906 * 110.99896 * 179.97438 * 14 13 2 16 16 C 1.53004 * 109.47028 * 179.97438 * 15 14 13 17 17 H 1.08994 * 109.43993 * 304.71234 * 16 15 14 18 18 C 1.53073 * 109.43328 * 64.62909 * 16 15 14 19 19 C 1.53412 * 108.29077 * 168.25384 * 18 16 15 20 20 O 1.42828 * 108.36661 * 295.24867 * 19 18 16 21 21 C 1.35848 * 117.86190 * 49.15547 * 20 19 18 22 22 C 1.39142 * 118.49695 * 162.97651 * 21 20 19 23 23 C 1.37975 * 120.21433 * 179.82038 * 22 21 20 24 24 C 1.38295 * 119.95507 * 359.97438 * 23 22 21 25 25 C 1.38095 * 119.98272 * 0.08724 * 24 23 22 26 26 C 1.38308 * 121.78846 * 342.87961 * 21 20 19 27 27 H 1.08995 * 109.46877 * 299.99647 * 1 2 3 28 28 H 1.08994 * 109.47281 * 59.99953 * 1 2 3 29 29 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47221 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47535 * 300.00432 * 3 2 1 32 32 H 1.08995 * 109.46939 * 60.00391 * 3 2 1 33 33 H 1.08995 * 109.47141 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47262 * 59.99681 * 4 2 1 35 35 H 0.97002 * 120.00251 * 359.97438 * 8 7 5 36 36 H 1.09003 * 109.47302 * 179.97438 * 13 2 1 37 37 H 1.09000 * 109.47173 * 299.99828 * 13 2 1 38 38 H 1.00900 * 111.00418 * 56.04451 * 14 13 2 39 39 H 1.09000 * 109.47267 * 299.99891 * 15 14 13 40 40 H 1.08999 * 109.46715 * 60.00191 * 15 14 13 41 41 H 1.09004 * 109.69947 * 287.94891 * 18 16 15 42 42 H 1.08999 * 109.70415 * 48.55156 * 18 16 15 43 43 H 1.08995 * 109.68532 * 54.97003 * 19 18 16 44 44 H 1.08999 * 109.68008 * 175.53276 * 19 18 16 45 45 H 1.08001 * 119.89746 * 359.79280 * 22 21 20 46 46 H 1.07994 * 120.02209 * 180.02562 * 23 22 21 47 47 H 1.07995 * 120.00424 * 180.10201 * 24 23 22 48 48 H 1.08006 * 119.84379 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5378 -0.0110 2.4797 6 1 0.9165 0.8668 2.3806 7 6 1.8713 -0.4818 3.7319 8 7 2.6275 -1.5511 3.8525 9 14 1.2493 0.3991 5.2572 10 1 1.7442 -0.3010 6.4696 11 1 -0.2358 0.3991 5.2578 12 1 1.7443 1.7991 5.2567 13 6 2.0399 -0.7212 -1.2493 14 7 1.5502 -0.0287 -2.4487 15 6 2.0217 -0.6944 -3.6704 16 6 1.4920 0.0535 -4.8956 17 1 0.4061 0.1250 -4.8355 18 6 2.0938 1.4604 -4.9330 19 6 1.7895 2.0781 -6.3039 20 8 2.4707 1.3166 -7.3018 21 6 2.3367 -0.0349 -7.2706 22 6 2.6766 -0.7622 -8.4072 23 6 2.5578 -2.1368 -8.4132 24 6 2.1001 -2.7953 -7.2865 25 6 1.7607 -2.0765 -6.1573 26 6 1.8770 -0.6957 -6.1460 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1301 -0.7209 1.2493 34 1 1.6768 -1.7490 1.2491 35 1 2.9502 -2.0087 3.0604 36 1 3.1300 -0.7209 -1.2496 37 1 1.6766 -1.7489 -1.2494 38 1 1.8196 0.9437 -2.4402 39 1 3.1116 -0.6938 -3.6871 40 1 1.6585 -1.7220 -3.6874 41 1 1.6486 2.0715 -4.1477 42 1 3.1725 1.4027 -4.7873 43 1 0.7158 2.0493 -6.4893 44 1 2.1391 3.1102 -6.3273 45 1 3.0342 -0.2490 -9.2876 46 1 2.8229 -2.6982 -9.2968 47 1 2.0084 -3.8713 -7.2898 48 1 1.4030 -2.5930 -5.2787 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174372410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:42 Heat of formation + Delta-G solvation = -40.773965 kcal Electronic energy + Delta-G solvation = -24848.221681 eV Core-core repulsion = 21480.904583 eV Total energy + Delta-G solvation = -3367.317098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02097 -37.96630 -37.70286 -36.00228 -33.35663 -31.98057 -30.91943 -30.39723 -27.63217 -26.54279 -26.37844 -24.89166 -24.26659 -23.24570 -22.35300 -21.63560 -20.01023 -18.33284 -17.94522 -16.86781 -16.45634 -16.32380 -15.83077 -15.20861 -14.75233 -14.69012 -14.13083 -13.96024 -13.90545 -13.67943 -13.49559 -13.24399 -13.01125 -12.96680 -12.55477 -12.00835 -11.95730 -11.85691 -11.63392 -11.47199 -11.17384 -11.09494 -10.97075 -10.88874 -10.84030 -10.57554 -10.45453 -10.10965 -10.00886 -9.80847 -9.29450 -9.01299 -8.41308 -8.36403 -8.28240 -8.20769 -6.29774 -3.97622 1.09210 1.21397 3.05248 3.45335 3.47130 3.53342 3.65523 4.15957 4.36927 4.43434 4.56013 4.58609 4.70725 4.85827 4.91634 5.06530 5.11611 5.21842 5.22475 5.29593 5.43386 5.45149 5.55563 5.59710 5.65763 5.68410 5.74580 5.83319 5.88961 5.97697 6.07250 6.14071 6.22302 6.27784 6.33381 6.39415 6.55243 6.55850 6.67480 6.73978 7.08145 7.10287 7.17195 7.21847 7.27173 7.41422 7.53531 7.61777 8.29208 8.52408 8.94681 9.73036 11.10134 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.002616 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.947226 B =10700.647751 C =11302.053981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.128 4.128 4 C 0.020 3.980 5 C -0.587 4.587 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.917 5.917 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.289 1.289 13 C 0.069 3.931 14 N -0.686 5.686 15 C 0.067 3.933 16 C -0.043 4.043 17 H 0.094 0.906 18 C -0.159 4.159 19 C 0.063 3.937 20 O -0.319 6.319 21 C 0.132 3.868 22 C -0.152 4.152 23 C -0.091 4.091 24 C -0.153 4.153 25 C -0.083 4.083 26 C -0.150 4.150 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.267 0.733 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.337 0.663 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 3.296 -24.437 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.185 4.185 4 C -0.017 4.017 5 C -0.626 4.626 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.554 5.554 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.216 1.216 13 C -0.060 4.060 14 N -0.318 5.318 15 C -0.062 4.062 16 C -0.062 4.062 17 H 0.112 0.888 18 C -0.196 4.196 19 C -0.012 4.012 20 O -0.233 6.233 21 C 0.087 3.913 22 C -0.171 4.171 23 C -0.109 4.109 24 C -0.171 4.171 25 C -0.101 4.101 26 C -0.151 4.151 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.021 0.979 34 H 0.024 0.976 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.157 0.843 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.125 0.875 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.141 0.859 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.958 3.063 -22.894 23.181 hybrid contribution 0.884 0.158 -1.463 1.717 sum -1.074 3.222 -24.357 24.593 Atomic orbital electron populations 1.21586 0.94774 1.00562 1.00297 1.20482 0.95991 0.94946 0.93739 1.21759 0.99593 0.96658 1.00523 1.19251 0.95189 0.95150 0.92130 1.22014 1.34443 1.14271 0.91848 0.92925 1.25788 0.95389 0.96608 1.01385 1.70777 1.32834 1.18407 1.33368 0.83592 0.75901 0.75289 0.75813 1.20926 1.21518 1.21573 1.22122 0.96285 0.98137 0.89423 1.60604 1.63627 1.06433 1.01128 1.22002 0.97004 0.98390 0.88805 1.20051 1.01397 0.93446 0.91296 0.88809 1.22335 1.02381 0.96901 0.98004 1.22976 0.96894 0.94861 0.86462 1.85976 1.69048 1.15222 1.53049 1.18689 0.96731 0.82657 0.93236 1.20581 1.05765 0.93899 0.96856 1.20921 0.98220 0.93344 0.98382 1.21049 1.02417 1.00037 0.93634 1.21050 0.97896 0.92733 0.98385 1.19817 1.05616 0.94751 0.94922 0.92540 0.93797 0.94285 0.94227 0.94791 0.91515 0.97906 0.97639 0.92221 0.95960 0.91616 0.84299 0.95360 0.90677 0.89167 0.90586 0.91656 0.87462 0.85432 0.85570 0.85891 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 8.06 37.16 0.30 -1.92 16 2 C -0.05 -1.01 0.60 -154.51 -0.09 -1.11 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.02 0.51 3.35 -27.88 -0.09 0.41 16 5 C -0.59 -16.18 7.65 -34.44 -0.26 -16.44 16 6 H 0.05 1.42 5.68 -52.49 -0.30 1.12 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.17 13.65 55.43 0.76 -27.41 16 9 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.07 1.18 4.65 -3.82 -0.02 1.16 16 14 N -0.69 -9.52 5.71 -113.77 -0.65 -10.17 16 15 C 0.07 0.82 4.80 -3.82 -0.02 0.80 16 16 C -0.04 -0.46 2.58 -91.70 -0.24 -0.70 16 17 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.16 -1.48 4.95 -26.48 -0.13 -1.61 16 19 C 0.06 0.54 7.03 37.37 0.26 0.80 16 20 O -0.32 -3.55 10.27 -19.26 -0.20 -3.75 16 21 C 0.13 1.50 6.47 -39.22 -0.25 1.25 16 22 C -0.15 -1.53 9.94 -39.34 -0.39 -1.92 16 23 C -0.09 -0.80 10.04 -39.66 -0.40 -1.20 16 24 C -0.15 -1.42 10.04 -39.61 -0.40 -1.82 16 25 C -0.08 -0.86 9.09 -39.51 -0.36 -1.22 16 26 C -0.15 -1.66 5.43 -104.44 -0.57 -2.23 16 27 H 0.06 1.18 6.62 -51.93 -0.34 0.83 16 28 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 32 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 33 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 34 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 35 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.34 4.44 5.30 -39.29 -0.21 4.23 16 39 H 0.03 0.36 8.11 -51.93 -0.42 -0.06 16 40 H 0.07 0.91 6.30 -51.93 -0.33 0.58 16 41 H 0.09 0.77 7.26 -51.93 -0.38 0.39 16 42 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 48 H 0.13 1.22 6.39 -52.48 -0.34 0.89 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -30.79 367.83 -10.05 -40.85 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.96 Total: 2.29 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -2.46 Total: -27.59 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.11 Total: -37.58 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.20 Total: -3.75 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.79 -10.05 -40.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174372410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.072 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds