Wall clock time and date at job start Tue Mar 31 2020 09:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47156 * 2 1 4 4 C 1.52999 * 109.47554 * 120.00617 * 2 1 3 5 5 C 1.50707 * 109.46772 * 299.99962 * 4 2 1 6 6 H 1.08000 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00017 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99756 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47206 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.47031 * 60.00126 * 9 7 5 12 12 H 1.48494 * 109.47207 * 300.00004 * 9 7 5 13 13 C 1.53004 * 109.46840 * 240.00323 * 2 1 3 14 14 N 1.46899 * 109.47092 * 59.99817 * 13 2 1 15 15 C 1.46906 * 110.99896 * 179.97438 * 14 13 2 16 16 C 1.53004 * 109.47028 * 179.97438 * 15 14 13 17 17 H 1.08994 * 109.43993 * 304.71234 * 16 15 14 18 18 C 1.53073 * 109.43328 * 64.62909 * 16 15 14 19 19 C 1.53412 * 108.29077 * 168.25384 * 18 16 15 20 20 O 1.42828 * 108.36661 * 295.24867 * 19 18 16 21 21 C 1.35848 * 117.86190 * 49.15547 * 20 19 18 22 22 C 1.39142 * 118.49695 * 162.97651 * 21 20 19 23 23 C 1.37975 * 120.21433 * 179.82038 * 22 21 20 24 24 C 1.38295 * 119.95507 * 359.97438 * 23 22 21 25 25 C 1.38095 * 119.98272 * 0.08724 * 24 23 22 26 26 C 1.38308 * 121.78846 * 342.87961 * 21 20 19 27 27 H 1.08995 * 109.46877 * 299.99647 * 1 2 3 28 28 H 1.08994 * 109.47281 * 59.99953 * 1 2 3 29 29 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47221 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47535 * 300.00432 * 3 2 1 32 32 H 1.08995 * 109.46939 * 60.00391 * 3 2 1 33 33 H 1.08995 * 109.47141 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47262 * 59.99681 * 4 2 1 35 35 H 0.97002 * 120.00251 * 359.97438 * 8 7 5 36 36 H 1.09003 * 109.47302 * 179.97438 * 13 2 1 37 37 H 1.09000 * 109.47173 * 299.99828 * 13 2 1 38 38 H 1.00900 * 111.00418 * 56.04451 * 14 13 2 39 39 H 1.09000 * 109.47267 * 299.99891 * 15 14 13 40 40 H 1.08999 * 109.46715 * 60.00191 * 15 14 13 41 41 H 1.09004 * 109.69947 * 287.94891 * 18 16 15 42 42 H 1.08999 * 109.70415 * 48.55156 * 18 16 15 43 43 H 1.08995 * 109.68532 * 54.97003 * 19 18 16 44 44 H 1.08999 * 109.68008 * 175.53276 * 19 18 16 45 45 H 1.08001 * 119.89746 * 359.79280 * 22 21 20 46 46 H 1.07994 * 120.02209 * 180.02562 * 23 22 21 47 47 H 1.07995 * 120.00424 * 180.10201 * 24 23 22 48 48 H 1.08006 * 119.84379 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5378 -0.0110 2.4797 6 1 0.9165 0.8668 2.3806 7 6 1.8713 -0.4818 3.7319 8 7 2.6275 -1.5511 3.8525 9 14 1.2493 0.3991 5.2572 10 1 1.7442 -0.3010 6.4696 11 1 -0.2358 0.3991 5.2578 12 1 1.7443 1.7991 5.2567 13 6 2.0399 -0.7212 -1.2493 14 7 1.5502 -0.0287 -2.4487 15 6 2.0217 -0.6944 -3.6704 16 6 1.4920 0.0535 -4.8956 17 1 0.4061 0.1250 -4.8355 18 6 2.0938 1.4604 -4.9330 19 6 1.7895 2.0781 -6.3039 20 8 2.4707 1.3166 -7.3018 21 6 2.3367 -0.0349 -7.2706 22 6 2.6766 -0.7622 -8.4072 23 6 2.5578 -2.1368 -8.4132 24 6 2.1001 -2.7953 -7.2865 25 6 1.7607 -2.0765 -6.1573 26 6 1.8770 -0.6957 -6.1460 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1301 -0.7209 1.2493 34 1 1.6768 -1.7490 1.2491 35 1 2.9502 -2.0087 3.0604 36 1 3.1300 -0.7209 -1.2496 37 1 1.6766 -1.7489 -1.2494 38 1 1.8196 0.9437 -2.4402 39 1 3.1116 -0.6938 -3.6871 40 1 1.6585 -1.7220 -3.6874 41 1 1.6486 2.0715 -4.1477 42 1 3.1725 1.4027 -4.7873 43 1 0.7158 2.0493 -6.4893 44 1 2.1391 3.1102 -6.3273 45 1 3.0342 -0.2490 -9.2876 46 1 2.8229 -2.6982 -9.2968 47 1 2.0084 -3.8713 -7.2898 48 1 1.4030 -2.5930 -5.2787 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174372410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:41 Heat of formation + Delta-G solvation = -57.541912 kcal Electronic energy + Delta-G solvation = -24848.948794 eV Core-core repulsion = 21480.904583 eV Total energy + Delta-G solvation = -3368.044211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77966 -39.40853 -38.42433 -37.17657 -35.03708 -33.51750 -31.63101 -31.14513 -28.94633 -28.21684 -27.98301 -26.33209 -25.04385 -24.55455 -23.71302 -22.55856 -20.78191 -19.93474 -18.78396 -18.46231 -17.61329 -17.26916 -16.86924 -16.24209 -15.93106 -15.71843 -15.56881 -15.29252 -15.09434 -14.80680 -14.47080 -14.35925 -14.27165 -14.06805 -13.73069 -13.44099 -13.41803 -13.05468 -12.74988 -12.68323 -12.58778 -12.51748 -12.32316 -12.28842 -11.95860 -11.89451 -11.74189 -11.59088 -11.48985 -11.24744 -11.05521 -10.48947 -10.43883 -9.76626 -9.41775 -9.12790 -8.60131 -6.28196 0.34696 0.46103 1.53030 1.61465 1.79534 2.35916 2.59660 2.78363 3.11258 3.22874 3.58802 3.66347 3.79501 3.89063 4.02821 4.09924 4.19605 4.22816 4.25371 4.30329 4.37845 4.45236 4.51548 4.57393 4.63708 4.66725 4.69842 4.81555 4.83531 4.86328 4.96843 4.99127 5.04992 5.09227 5.10915 5.16861 5.31348 5.34916 5.37203 5.48338 5.52790 5.58589 5.60085 5.71147 5.86027 5.94832 6.14963 6.27940 6.43483 6.48065 6.67046 7.51861 8.80002 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.002616 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.947226 B =10700.647751 C =11302.053981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.049 4.049 3 C -0.122 4.122 4 C 0.023 3.977 5 C -0.589 4.589 6 H 0.059 0.941 7 C -0.047 4.047 8 N -0.947 5.947 9 Si 1.113 2.887 10 H -0.289 1.289 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.081 3.919 14 N -0.677 5.677 15 C 0.072 3.928 16 C -0.036 4.036 17 H 0.093 0.907 18 C -0.156 4.156 19 C 0.060 3.940 20 O -0.333 6.333 21 C 0.114 3.886 22 C -0.164 4.164 23 C -0.089 4.089 24 C -0.158 4.158 25 C -0.097 4.097 26 C -0.164 4.164 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.047 0.953 33 H -0.022 1.022 34 H -0.021 1.021 35 H 0.252 0.748 36 H 0.014 0.986 37 H 0.057 0.943 38 H 0.345 0.655 39 H 0.021 0.979 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.129 0.871 45 H 0.139 0.861 46 H 0.154 0.846 47 H 0.142 0.858 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 4.684 -25.950 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.049 4.049 3 C -0.179 4.179 4 C -0.015 4.015 5 C -0.627 4.627 6 H 0.078 0.922 7 C -0.243 4.243 8 N -0.586 5.586 9 Si 0.935 3.065 10 H -0.215 1.215 11 H -0.195 1.195 12 H -0.194 1.194 13 C -0.048 4.048 14 N -0.310 5.310 15 C -0.057 4.057 16 C -0.054 4.054 17 H 0.111 0.889 18 C -0.193 4.193 19 C -0.014 4.014 20 O -0.247 6.247 21 C 0.069 3.931 22 C -0.182 4.182 23 C -0.107 4.107 24 C -0.176 4.176 25 C -0.115 4.115 26 C -0.166 4.166 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.066 0.934 33 H -0.004 1.004 34 H -0.003 1.003 35 H 0.061 0.939 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.165 0.835 39 H 0.039 0.961 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.147 0.853 45 H 0.157 0.843 46 H 0.171 0.829 47 H 0.160 0.840 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.887 4.467 -24.442 25.014 hybrid contribution 1.187 -0.321 -1.085 1.640 sum -1.700 4.146 -25.527 25.918 Atomic orbital electron populations 1.21494 0.94017 1.00069 1.00734 1.20375 0.96467 0.95575 0.92488 1.21682 0.99278 0.95522 1.01437 1.19191 0.93533 0.94245 0.94491 1.22391 1.33507 1.14114 0.92656 0.92250 1.27327 0.95052 0.96607 1.05291 1.70917 1.35018 1.20039 1.32597 0.82987 0.76503 0.75056 0.71989 1.21474 1.19472 1.19384 1.21821 0.95666 0.97643 0.89677 1.60533 1.63284 1.06686 1.00480 1.21983 0.96564 0.98551 0.88584 1.19948 1.01247 0.93958 0.90271 0.88860 1.22317 1.01683 0.96321 0.99008 1.23173 0.97349 0.95508 0.85411 1.85955 1.69581 1.15277 1.53922 1.18936 0.97369 0.82977 0.93825 1.20879 1.05743 0.94597 0.97027 1.21270 0.97097 0.93110 0.99174 1.21355 1.01763 1.01128 0.93361 1.21227 0.98360 0.92778 0.99095 1.19904 1.06385 0.95146 0.95137 0.94296 0.90966 0.95273 0.94721 0.91005 0.93392 1.00369 1.00258 0.93853 0.96728 0.92475 0.83477 0.96080 0.90795 0.87953 0.91590 0.90949 0.85299 0.84331 0.82880 0.83969 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.97 8.06 71.98 0.58 -3.39 16 2 C -0.05 -1.91 0.60 -52.18 -0.03 -1.94 16 3 C -0.12 -4.32 7.89 71.98 0.57 -3.76 16 4 C 0.02 1.18 3.35 29.85 0.10 1.28 16 5 C -0.59 -32.78 7.65 25.60 0.20 -32.58 16 6 H 0.06 3.18 5.68 -2.91 -0.02 3.17 16 7 C -0.05 -2.71 5.46 84.65 0.46 -2.25 16 8 N -0.95 -59.78 13.65 21.45 0.29 -59.49 16 9 Si 1.11 50.66 29.90 68.60 2.05 52.71 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 13 C 0.08 2.73 4.65 86.30 0.40 3.14 16 14 N -0.68 -17.61 5.71 -513.86 -2.93 -20.55 16 15 C 0.07 1.67 4.80 86.30 0.41 2.08 16 16 C -0.04 -0.71 2.58 -11.49 -0.03 -0.74 16 17 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 18 C -0.16 -2.62 4.95 30.76 0.15 -2.47 16 19 C 0.06 0.91 7.03 72.12 0.51 1.42 16 20 O -0.33 -7.00 10.27 -91.84 -0.94 -7.95 16 21 C 0.11 2.47 6.47 22.50 0.15 2.62 16 22 C -0.16 -3.08 9.94 22.42 0.22 -2.85 16 23 C -0.09 -1.40 10.04 22.22 0.22 -1.18 16 24 C -0.16 -2.68 10.04 22.25 0.22 -2.45 16 25 C -0.10 -1.92 9.09 22.32 0.20 -1.72 16 26 C -0.16 -3.49 5.43 -19.75 -0.11 -3.60 16 27 H 0.04 1.57 6.62 -2.39 -0.02 1.56 16 28 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.99 6.57 -2.38 -0.02 1.97 16 32 H 0.05 1.87 6.62 -2.39 -0.02 1.86 16 33 H -0.02 -1.23 8.01 -2.39 -0.02 -1.25 16 34 H -0.02 -1.18 8.01 -2.39 -0.02 -1.19 16 35 H 0.25 16.19 7.22 -92.71 -0.67 15.52 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.34 8.14 5.30 -89.69 -0.48 7.67 16 39 H 0.02 0.53 8.11 -2.39 -0.02 0.51 16 40 H 0.07 1.73 6.30 -2.39 -0.02 1.72 16 41 H 0.10 1.45 7.26 -2.38 -0.02 1.43 16 42 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 47 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 48 H 0.13 2.41 6.39 -2.91 -0.02 2.39 16 Total: -1.00 -67.57 367.83 3.26 -64.31 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.56 Total: 19.34 kcal Atomic # 6 Polarization: -52.61 SS G_CDS: 4.23 Total: -48.38 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.64 Total: -80.03 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.94 Total: -7.95 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.05 Total: 52.71 kcal Total: -67.57 3.26 -64.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174372410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.770 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds