Wall clock time and date at job start Tue Mar 31 2020 09:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99993 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00130 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47108 * 89.99504 * 9 7 5 11 11 H 1.48498 * 109.47097 * 209.99712 * 9 7 5 12 12 H 1.48499 * 109.46508 * 329.99366 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47393 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.11761 * 269.72599 * 17 16 15 19 19 C 1.37927 * 120.35669 * 179.97438 * 18 17 16 20 20 C 1.39292 * 120.23624 * 0.55211 * 19 18 17 21 21 C 1.38885 * 118.87530 * 359.40517 * 20 19 18 22 22 C 1.37744 * 120.78615 * 0.42629 * 21 20 19 23 23 C 1.51646 * 107.03625 * 180.68679 * 21 20 19 24 24 C 1.54706 * 101.92251 * 15.47258 * 23 21 20 25 25 O 1.36139 * 129.88443 * 179.09753 * 20 19 18 26 26 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 27 27 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 28 28 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 31 31 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 32 32 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 34 34 H 0.96999 * 120.00009 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 36 36 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 37 37 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 38 38 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 39 39 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 40 40 H 1.09001 * 109.47393 * 299.99719 * 16 15 14 41 41 H 1.08998 * 109.47408 * 60.00073 * 16 15 14 42 42 H 1.08000 * 119.82379 * 0.17054 * 18 17 16 43 43 H 1.07998 * 119.88373 * 180.27409 * 19 18 17 44 44 H 1.07998 * 120.01003 * 179.76471 * 22 21 20 45 45 H 1.08995 * 110.93946 * 133.63701 * 23 21 20 46 46 H 1.09003 * 110.93444 * 257.28475 * 23 21 20 47 47 H 1.09003 * 110.74293 * 93.02010 * 24 23 21 48 48 H 1.09003 * 110.74906 * 216.18654 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 1.4324 0.1378 -4.8058 9 14 2.9453 -2.0006 -3.9032 10 1 2.0867 -3.2114 -3.9491 11 1 3.7376 -1.9078 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 6 1.9763 -0.6290 6.1488 18 6 1.2205 -1.6310 6.7294 19 6 1.6592 -2.2594 7.8762 20 6 2.8630 -1.8816 8.4664 21 6 3.6138 -0.8748 7.8734 22 6 3.1754 -0.2511 6.7262 23 6 4.8611 -0.6951 8.7170 24 6 4.8586 -1.9858 9.5701 25 8 3.4679 -2.3496 9.5927 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7218 -1.2489 33 1 1.6767 -1.7491 -1.2491 34 1 1.6668 -0.1937 -5.6867 35 1 3.1300 -0.7209 1.2495 36 1 1.6766 -1.7489 1.2494 37 1 1.8198 0.9437 2.4401 38 1 1.6586 -1.7220 3.6874 39 1 3.1116 -0.6939 3.6870 40 1 1.8550 1.0812 4.8787 41 1 0.4023 0.0526 4.8788 42 1 0.2833 -1.9254 6.2807 43 1 1.0650 -3.0440 8.3208 44 1 3.7675 0.5330 6.2777 45 1 5.7513 -0.6441 8.0902 46 1 4.7802 0.1898 9.3483 47 1 5.4539 -2.7647 9.0935 48 1 5.2242 -1.7839 10.5769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174394979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:26 Heat of formation + Delta-G solvation = -27.883638 kcal Electronic energy + Delta-G solvation = -23931.056178 eV Core-core repulsion = 20564.298047 eV Total energy + Delta-G solvation = -3366.758132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38000 -38.43833 -37.62294 -34.95534 -33.03062 -32.50282 -31.57272 -29.58214 -28.29443 -27.35362 -26.36092 -25.06348 -23.78843 -22.87444 -22.20111 -21.66084 -20.83909 -17.82247 -17.69797 -17.03731 -16.78234 -16.51952 -15.72220 -15.50037 -14.54426 -14.42157 -14.37146 -14.02487 -13.63958 -13.54017 -13.46178 -13.22741 -13.11517 -12.87508 -12.56290 -12.32733 -12.19726 -12.12796 -11.71219 -11.59431 -11.36403 -11.07047 -11.01805 -10.90135 -10.87492 -10.79431 -10.48603 -10.33400 -9.77461 -9.67513 -9.28298 -9.16426 -8.89135 -8.48575 -8.29097 -8.15348 -5.98869 -3.94880 1.00470 1.08267 2.92264 3.33066 3.39296 3.40584 3.44043 4.02999 4.17076 4.34310 4.49290 4.53480 4.60239 4.83047 4.89990 4.95757 5.09846 5.13852 5.21854 5.28316 5.33397 5.34417 5.38194 5.56630 5.59245 5.65508 5.74423 5.87627 5.91286 5.99805 6.02489 6.09638 6.17097 6.26824 6.33444 6.40588 6.43706 6.61072 6.70812 6.81520 6.88909 7.09044 7.14824 7.21233 7.30900 7.34779 7.47866 7.64329 7.86782 8.61128 9.07125 9.64308 11.14197 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.002212 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.799442 B =12652.577848 C =12969.540014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.049 4.049 3 C -0.131 4.131 4 C -0.005 4.005 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.068 3.932 14 N -0.687 5.687 15 C 0.064 3.936 16 C -0.074 4.074 17 C -0.102 4.102 18 C -0.079 4.079 19 C -0.135 4.135 20 C 0.096 3.904 21 C -0.174 4.174 22 C -0.067 4.067 23 C -0.111 4.111 24 C 0.051 3.949 25 O -0.308 6.308 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.012 0.988 33 H 0.010 0.990 34 H 0.261 0.739 35 H 0.022 0.978 36 H 0.065 0.935 37 H 0.339 0.661 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -1.920 28.931 29.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.188 4.188 4 C -0.043 4.043 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.319 5.319 15 C -0.066 4.066 16 C -0.111 4.111 17 C -0.103 4.103 18 C -0.097 4.097 19 C -0.154 4.154 20 C 0.051 3.949 21 C -0.175 4.175 22 C -0.085 4.085 23 C -0.148 4.148 24 C -0.024 4.024 25 O -0.222 6.222 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.158 0.842 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.470 -2.383 28.924 29.364 hybrid contribution 1.795 -0.587 -0.295 1.912 sum 6.265 -2.969 28.628 29.456 Atomic orbital electron populations 1.21618 0.94519 1.00671 1.00721 1.20419 0.96219 0.95039 0.93254 1.21783 0.99564 0.96490 1.00977 1.19633 0.95791 0.95481 0.93366 1.21139 1.31378 1.13212 0.88672 0.90408 1.25028 0.95847 0.96757 0.96051 1.69911 1.46165 1.40651 0.97807 0.86843 0.81291 0.84068 0.77429 1.20441 1.21596 1.19208 1.22128 0.96233 0.98139 0.89571 1.60554 1.63712 1.06438 1.01155 1.21914 0.96802 0.98686 0.89178 1.20514 1.01932 0.98457 0.90243 1.19773 0.94801 0.98082 0.97617 1.20837 0.99677 0.94991 0.94234 1.20263 0.95538 1.02701 0.96880 1.19567 0.94857 0.93474 0.87013 1.20732 0.98711 0.99474 0.98611 1.20212 0.95569 0.99084 0.93631 1.21791 0.96604 0.98890 0.97485 1.23814 0.80943 0.95797 1.01802 1.86816 1.22543 1.75693 1.37127 0.93621 0.92140 0.94238 0.94191 0.91144 0.94534 0.96985 0.97165 0.92910 0.95975 0.91623 0.84216 0.91140 0.95701 0.91177 0.89856 0.84853 0.85459 0.85852 0.89060 0.89200 0.90561 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 2 C -0.05 -0.94 0.60 -154.51 -0.09 -1.03 16 3 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 4 C 0.00 -0.12 3.11 -27.88 -0.09 -0.20 16 5 C -0.51 -13.97 8.20 -34.44 -0.28 -14.26 16 6 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -27.80 13.96 55.43 0.77 -27.02 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.07 1.11 4.65 -3.82 -0.02 1.09 16 14 N -0.69 -9.33 5.71 -113.78 -0.65 -9.98 16 15 C 0.06 0.73 5.67 -3.82 -0.02 0.71 16 16 C -0.07 -0.71 5.61 -27.89 -0.16 -0.86 16 17 C -0.10 -0.99 5.14 -104.56 -0.54 -1.53 16 18 C -0.08 -0.75 9.68 -39.68 -0.38 -1.13 16 19 C -0.14 -1.33 10.06 -39.30 -0.40 -1.73 16 20 C 0.10 1.01 7.04 -38.95 -0.27 0.74 16 21 C -0.17 -1.68 6.27 -104.10 -0.65 -2.33 16 22 C -0.07 -0.64 9.70 -39.72 -0.39 -1.02 16 23 C -0.11 -0.74 7.12 -26.52 -0.19 -0.93 16 24 C 0.05 0.33 8.01 38.06 0.30 0.64 16 25 O -0.31 -3.14 11.10 -20.18 -0.22 -3.37 16 26 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 27 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 31 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 32 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 33 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.34 4.37 6.77 -39.29 -0.27 4.11 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 41 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -31.13 376.22 -10.05 -41.18 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.27 Total: 0.49 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.68 Total: -24.15 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.12 Total: -37.00 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.22 Total: -3.37 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.13 -10.05 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174394979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.296 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds