Wall clock time and date at job start Tue Mar 31 2020 09:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99993 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00130 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47108 * 89.99504 * 9 7 5 11 11 H 1.48498 * 109.47097 * 209.99712 * 9 7 5 12 12 H 1.48499 * 109.46508 * 329.99366 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47393 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.11761 * 269.72599 * 17 16 15 19 19 C 1.37927 * 120.35669 * 179.97438 * 18 17 16 20 20 C 1.39292 * 120.23624 * 0.55211 * 19 18 17 21 21 C 1.38885 * 118.87530 * 359.40517 * 20 19 18 22 22 C 1.37744 * 120.78615 * 0.42629 * 21 20 19 23 23 C 1.51646 * 107.03625 * 180.68679 * 21 20 19 24 24 C 1.54706 * 101.92251 * 15.47258 * 23 21 20 25 25 O 1.36139 * 129.88443 * 179.09753 * 20 19 18 26 26 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 27 27 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 28 28 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 31 31 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 32 32 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 34 34 H 0.96999 * 120.00009 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 36 36 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 37 37 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 38 38 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 39 39 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 40 40 H 1.09001 * 109.47393 * 299.99719 * 16 15 14 41 41 H 1.08998 * 109.47408 * 60.00073 * 16 15 14 42 42 H 1.08000 * 119.82379 * 0.17054 * 18 17 16 43 43 H 1.07998 * 119.88373 * 180.27409 * 19 18 17 44 44 H 1.07998 * 120.01003 * 179.76471 * 22 21 20 45 45 H 1.08995 * 110.93946 * 133.63701 * 23 21 20 46 46 H 1.09003 * 110.93444 * 257.28475 * 23 21 20 47 47 H 1.09003 * 110.74293 * 93.02010 * 24 23 21 48 48 H 1.09003 * 110.74906 * 216.18654 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 1.4324 0.1378 -4.8058 9 14 2.9453 -2.0006 -3.9032 10 1 2.0867 -3.2114 -3.9491 11 1 3.7376 -1.9078 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 6 1.9763 -0.6290 6.1488 18 6 1.2205 -1.6310 6.7294 19 6 1.6592 -2.2594 7.8762 20 6 2.8630 -1.8816 8.4664 21 6 3.6138 -0.8748 7.8734 22 6 3.1754 -0.2511 6.7262 23 6 4.8611 -0.6951 8.7170 24 6 4.8586 -1.9858 9.5701 25 8 3.4679 -2.3496 9.5927 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7218 -1.2489 33 1 1.6767 -1.7491 -1.2491 34 1 1.6668 -0.1937 -5.6867 35 1 3.1300 -0.7209 1.2495 36 1 1.6766 -1.7489 1.2494 37 1 1.8198 0.9437 2.4401 38 1 1.6586 -1.7220 3.6874 39 1 3.1116 -0.6939 3.6870 40 1 1.8550 1.0812 4.8787 41 1 0.4023 0.0526 4.8788 42 1 0.2833 -1.9254 6.2807 43 1 1.0650 -3.0440 8.3208 44 1 3.7675 0.5330 6.2777 45 1 5.7513 -0.6441 8.0902 46 1 4.7802 0.1898 9.3483 47 1 5.4539 -2.7647 9.0935 48 1 5.2242 -1.7839 10.5769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174394979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:25 Heat of formation + Delta-G solvation = -45.404519 kcal Electronic energy + Delta-G solvation = -23931.815941 eV Core-core repulsion = 20564.298047 eV Total energy + Delta-G solvation = -3367.517894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.01591 -39.43257 -38.75687 -36.15776 -34.40808 -33.62566 -32.69225 -30.19608 -29.79653 -28.65528 -27.89721 -26.37616 -24.56296 -24.02123 -23.12040 -22.82247 -21.57011 -19.41120 -18.86010 -18.33371 -17.68883 -17.11107 -16.77347 -16.50247 -16.14885 -15.76703 -15.16551 -15.11589 -15.04453 -14.65760 -14.29508 -14.14968 -14.12129 -13.92295 -13.80781 -13.77807 -13.44147 -12.93314 -12.79847 -12.67182 -12.62373 -12.48712 -12.33422 -12.23120 -12.09967 -11.97480 -11.70812 -11.63388 -11.55533 -11.33107 -10.96538 -10.79428 -10.69470 -9.84537 -9.25573 -8.98878 -8.21144 -6.21193 0.31289 0.37271 1.36080 1.37256 1.48371 2.32983 2.39737 2.69660 3.13667 3.28503 3.48371 3.67777 3.95048 4.06564 4.10603 4.14072 4.18718 4.23184 4.31926 4.37280 4.44630 4.47071 4.55987 4.66720 4.74706 4.77304 4.80194 4.85295 4.87899 4.93536 4.99725 5.06045 5.10463 5.18747 5.20644 5.22614 5.32199 5.38668 5.41212 5.46877 5.54918 5.63735 5.67765 5.69527 5.78051 5.83666 6.14489 6.22552 6.42900 6.58262 6.86149 7.41085 8.94947 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.002212 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.799442 B =12652.577848 C =12969.540014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.125 4.125 4 C -0.004 4.004 5 C -0.502 4.502 6 H 0.045 0.955 7 C -0.001 4.001 8 N -0.954 5.954 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.250 1.250 13 C 0.080 3.920 14 N -0.686 5.686 15 C 0.068 3.932 16 C -0.063 4.063 17 C -0.109 4.109 18 C -0.085 4.085 19 C -0.148 4.148 20 C 0.075 3.925 21 C -0.185 4.185 22 C -0.075 4.075 23 C -0.108 4.108 24 C 0.045 3.955 25 O -0.328 6.328 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.012 0.988 33 H 0.010 0.990 34 H 0.262 0.738 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.345 0.655 38 H 0.065 0.935 39 H 0.026 0.974 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.146 0.854 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.510 -2.543 31.203 31.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.049 4.049 3 C -0.182 4.182 4 C -0.042 4.042 5 C -0.540 4.540 6 H 0.063 0.937 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.766 3.234 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.173 1.173 13 C -0.049 4.049 14 N -0.318 5.318 15 C -0.061 4.061 16 C -0.101 4.101 17 C -0.110 4.110 18 C -0.103 4.103 19 C -0.167 4.167 20 C 0.030 3.970 21 C -0.186 4.186 22 C -0.093 4.093 23 C -0.145 4.145 24 C -0.029 4.029 25 O -0.243 6.243 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.165 0.835 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.102 0.898 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.841 -3.003 31.227 31.910 hybrid contribution 1.326 -0.333 -0.941 1.660 sum 7.168 -3.336 30.286 31.301 Atomic orbital electron populations 1.21525 0.94607 1.00360 1.00219 1.20355 0.96103 0.95478 0.92991 1.21703 0.99765 0.95840 1.00926 1.19611 0.95603 0.95393 0.93616 1.21429 1.29998 1.12136 0.90435 0.93658 1.25939 0.97672 1.00230 0.95828 1.70065 1.48299 1.42831 0.98415 0.85795 0.79705 0.80045 0.77898 1.19683 1.21442 1.17346 1.21850 0.96199 0.97703 0.89153 1.60483 1.63742 1.06731 1.00890 1.21903 0.96879 0.98517 0.88798 1.20401 1.01891 0.98621 0.89183 1.19851 0.95091 0.98280 0.97768 1.21028 1.00207 0.94911 0.94161 1.20493 0.95780 1.03168 0.97256 1.19861 0.95429 0.94217 0.87469 1.21101 0.99692 0.99037 0.98729 1.20431 0.95708 0.99431 0.93741 1.21877 0.95915 0.99325 0.97383 1.24102 0.79405 0.95989 1.03417 1.86781 1.24324 1.76068 1.37164 0.91271 0.95356 0.94433 0.93761 0.94507 0.91258 0.96956 0.97144 0.92920 0.95715 0.91841 0.83538 0.91617 0.95560 0.90202 0.89754 0.83626 0.84686 0.84536 0.87556 0.88180 0.89838 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.12 8.06 71.98 0.58 -3.54 16 2 C -0.05 -1.81 0.60 -52.18 -0.03 -1.85 16 3 C -0.12 -4.41 7.89 71.98 0.57 -3.84 16 4 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 5 C -0.50 -28.26 8.20 25.60 0.21 -28.05 16 6 H 0.05 2.79 5.92 -2.91 -0.02 2.77 16 7 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 8 N -0.95 -60.18 13.96 21.45 0.30 -59.89 16 9 Si 0.94 44.95 27.47 68.60 1.88 46.83 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 13 C 0.08 2.42 4.65 86.30 0.40 2.82 16 14 N -0.69 -16.58 5.71 -513.88 -2.94 -19.52 16 15 C 0.07 1.38 5.67 86.30 0.49 1.87 16 16 C -0.06 -1.05 5.61 29.85 0.17 -0.88 16 17 C -0.11 -1.92 5.14 -19.83 -0.10 -2.02 16 18 C -0.09 -1.49 9.68 22.21 0.21 -1.28 16 19 C -0.15 -2.82 10.06 22.45 0.23 -2.59 16 20 C 0.08 1.52 7.04 22.68 0.16 1.68 16 21 C -0.18 -3.26 6.27 -19.52 -0.12 -3.38 16 22 C -0.08 -1.29 9.70 22.18 0.22 -1.07 16 23 C -0.11 -1.21 7.12 30.73 0.22 -0.99 16 24 C 0.05 0.50 8.01 72.56 0.58 1.08 16 25 O -0.33 -6.42 11.10 -95.13 -1.06 -7.47 16 26 H 0.07 2.24 7.60 -2.39 -0.02 2.22 16 27 H 0.03 1.21 6.62 -2.39 -0.02 1.20 16 28 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 31 H 0.07 1.96 6.57 -2.39 -0.02 1.94 16 32 H 0.01 0.56 7.20 -2.39 -0.02 0.55 16 33 H 0.01 0.48 7.57 -2.38 -0.02 0.46 16 34 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.34 7.70 6.77 -89.69 -0.61 7.09 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 41 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 42 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 45 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -68.10 376.22 2.79 -65.31 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.27 Total: 16.48 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 4.33 Total: -41.74 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -2.64 Total: -79.41 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -1.06 Total: -7.47 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -68.10 2.79 -65.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174394979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.908 kcal (2) G-P(sol) polarization free energy of solvation -68.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds