Wall clock time and date at job start Tue Mar 31 2020 08:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47072 * 2 1 4 4 C 1.52991 * 109.47310 * 120.00247 * 2 1 3 5 5 C 1.53006 * 109.47308 * 83.49700 * 4 2 1 6 6 C 1.53001 * 109.47134 * 302.54195 * 5 4 2 7 7 C 1.52997 * 109.47277 * 182.53833 * 5 4 2 8 8 C 1.53006 * 109.46705 * 62.53747 * 5 4 2 9 9 N 1.46498 * 109.46983 * 180.02562 * 8 5 4 10 10 C 1.34773 * 120.00160 * 180.02562 * 9 8 5 11 11 O 1.21552 * 120.00024 * 359.97438 * 10 9 8 12 12 C 1.47889 * 119.99894 * 180.02562 * 10 9 8 13 13 C 1.39918 * 120.02737 * 359.96905 * 12 10 9 14 14 C 1.38331 * 120.35776 * 180.02562 * 13 12 10 15 15 C 1.37751 * 120.41387 * 0.02562 * 14 13 12 16 16 C 1.40754 * 120.03703 * 359.97438 * 15 14 13 17 17 C 1.41441 * 120.17757 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99560 * 23.31846 * 17 16 15 19 19 C 1.39930 * 119.99992 * 203.32122 * 17 16 15 20 20 N 1.30821 * 120.00304 * 16.61816 * 19 17 16 21 21 Si 1.86804 * 119.99924 * 196.61557 * 19 17 16 22 22 H 1.48506 * 109.47146 * 59.99966 * 21 19 17 23 23 H 1.48504 * 109.47209 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46949 * 300.00285 * 21 19 17 25 25 C 1.38999 * 120.01955 * 180.02562 * 12 10 9 26 26 H 1.09007 * 109.47013 * 62.28413 * 1 2 3 27 27 H 1.09005 * 109.47344 * 182.28015 * 1 2 3 28 28 H 1.08996 * 109.47092 * 302.28387 * 1 2 3 29 29 H 1.09007 * 109.46977 * 240.00564 * 2 1 3 30 30 H 1.09000 * 109.47093 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47518 * 300.00274 * 3 2 1 32 32 H 1.09007 * 109.47284 * 60.00399 * 3 2 1 33 33 H 1.08999 * 109.46958 * 323.50162 * 4 2 1 34 34 H 1.08997 * 109.47453 * 203.49640 * 4 2 1 35 35 H 1.08998 * 109.47263 * 190.01218 * 6 5 4 36 36 H 1.09004 * 109.46538 * 310.00999 * 6 5 4 37 37 H 1.08999 * 109.46866 * 70.00634 * 6 5 4 38 38 H 1.08999 * 109.47440 * 294.18007 * 7 5 4 39 39 H 1.09001 * 109.47000 * 54.18067 * 7 5 4 40 40 H 1.09004 * 109.47172 * 174.18200 * 7 5 4 41 41 H 1.09002 * 109.46847 * 60.00436 * 8 5 4 42 42 H 1.09000 * 109.47219 * 299.99885 * 8 5 4 43 43 H 0.97002 * 119.99768 * 0.02562 * 9 8 5 44 44 H 1.07994 * 119.82162 * 0.02562 * 13 12 10 45 45 H 1.07998 * 119.79223 * 180.02562 * 14 13 12 46 46 H 1.07998 * 119.97930 * 179.97438 * 15 14 13 47 47 H 0.96999 * 120.00181 * 180.02562 * 20 19 17 48 48 H 1.07996 * 120.20671 * 359.69321 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 2.0560 -2.2302 0.9961 6 6 0.6507 -2.6978 0.6120 7 6 2.5057 -2.9555 2.2659 8 6 3.0276 -2.5459 -0.1430 9 7 3.0425 -3.9905 -0.3857 10 6 3.8317 -4.5037 -1.3502 11 8 4.5307 -3.7678 -2.0191 12 6 3.8463 -5.9620 -1.5956 13 6 3.0415 -6.8095 -0.8264 14 6 3.0502 -8.1747 -1.0497 15 6 3.8512 -8.7156 -2.0312 16 6 4.6675 -7.8788 -2.8151 17 6 5.4907 -8.4310 -3.8240 18 1 5.2446 -9.3893 -4.2573 19 6 6.6239 -7.7359 -4.2608 20 7 7.1098 -6.7583 -3.5399 21 14 7.4429 -8.2039 -5.8731 22 1 6.4727 -8.0436 -6.9860 23 1 8.6151 -7.3227 -6.1070 24 1 7.8922 -9.6178 -5.8080 25 6 4.6604 -6.4918 -2.5899 26 1 -0.3633 0.4780 -0.9098 27 1 -0.3634 -1.0269 0.0409 28 1 -0.3633 0.5489 0.8688 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.3822 -0.5009 2.0899 34 1 3.0496 -0.3807 1.4786 35 1 0.6195 -3.7873 0.6053 36 1 -0.0692 -2.3181 1.3370 37 1 0.4008 -2.3210 -0.3798 38 1 3.5434 -2.7011 2.4815 39 1 1.8756 -2.6501 3.1012 40 1 2.4185 -4.0322 2.1195 41 1 4.0287 -2.2127 0.1307 42 1 2.7072 -2.0291 -1.0476 43 1 2.4844 -4.5777 0.1478 44 1 2.4102 -6.3957 -0.0541 45 1 2.4251 -8.8204 -0.4509 46 1 3.8528 -9.7825 -2.1993 47 1 7.8951 -6.2762 -3.8428 48 1 5.2802 -5.8410 -3.1888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175347720.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:46 Heat of formation + Delta-G solvation = -45.042450 kcal Electronic energy + Delta-G solvation = -24953.886078 eV Core-core repulsion = 21586.383884 eV Total energy + Delta-G solvation = -3367.502194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.76770 -38.42945 -36.89508 -34.83856 -33.74443 -32.55170 -30.13099 -29.39867 -28.44146 -27.03108 -26.47534 -26.03349 -25.13282 -22.20159 -20.91709 -20.52421 -19.57158 -18.89337 -17.66053 -16.28015 -15.93859 -15.19264 -15.06310 -14.77347 -14.69387 -14.45679 -14.23548 -13.68759 -13.49443 -13.29560 -13.15030 -12.80274 -12.63193 -12.46902 -12.40370 -12.12146 -11.97501 -11.87787 -11.83304 -11.59569 -11.12688 -11.07071 -11.01915 -10.87672 -10.74184 -10.65097 -10.48389 -10.41645 -10.16278 -9.99947 -9.69123 -9.20664 -8.96532 -8.54790 -7.60850 -7.50201 -6.77343 -4.40556 2.24851 2.83989 3.08054 3.09871 3.17747 3.78160 3.90442 3.93700 4.47586 4.60871 4.67022 4.70519 4.87584 4.97822 5.04100 5.34219 5.45592 5.46641 5.55254 5.58690 5.63050 5.66570 5.70464 5.71451 5.73346 5.77646 5.83997 5.94167 5.96207 6.01088 6.06145 6.10972 6.20031 6.23145 6.29153 6.30452 6.36540 6.73859 6.94054 7.00464 7.05284 7.24067 7.40258 7.72459 7.78671 7.95901 8.14153 8.22307 8.52796 8.81648 8.85567 9.01940 10.15807 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020520 B = 0.003189 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.181488 B = 8779.061392 C = 9623.825274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.105 4.105 3 C -0.147 4.147 4 C -0.100 4.100 5 C -0.076 4.076 6 C -0.148 4.148 7 C -0.143 4.143 8 C 0.130 3.870 9 N -0.734 5.734 10 C 0.562 3.438 11 O -0.548 6.548 12 C -0.128 4.128 13 C -0.219 4.219 14 C -0.098 4.098 15 C -0.214 4.214 16 C 0.097 3.903 17 C -0.458 4.458 18 H 0.080 0.920 19 C 0.072 3.928 20 N -0.783 5.783 21 Si 0.912 3.088 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.093 4.093 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.397 0.603 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.285 0.715 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 10.688 8.946 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.123 4.123 3 C -0.204 4.204 4 C -0.138 4.138 5 C -0.076 4.076 6 C -0.205 4.205 7 C -0.200 4.200 8 C 0.006 3.994 9 N -0.389 5.389 10 C 0.352 3.648 11 O -0.426 6.426 12 C -0.131 4.131 13 C -0.239 4.239 14 C -0.116 4.116 15 C -0.234 4.234 16 C 0.095 3.905 17 C -0.487 4.487 18 H 0.098 0.902 19 C -0.147 4.147 20 N -0.407 5.407 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.190 1.190 25 C -0.113 4.113 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.234 0.766 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.487 11.412 8.481 17.093 hybrid contribution 0.189 -0.433 -0.294 0.556 sum -9.298 10.979 8.187 16.554 Atomic orbital electron populations 1.22373 0.95425 1.03431 1.01213 1.21253 0.95967 0.96077 0.98994 1.21856 1.00992 0.96155 1.01383 1.21681 1.01497 0.92928 0.97678 1.20805 0.95592 0.95868 0.95334 1.22203 0.95448 1.01073 1.01784 1.21890 1.01394 1.00374 0.96361 1.21390 0.98784 0.81957 0.97251 1.45984 1.46708 1.07624 1.38544 1.18844 0.78240 0.89046 0.78643 1.90692 1.41987 1.61551 1.48364 1.19504 1.02080 0.90266 1.01268 1.20318 1.05598 0.93748 1.04201 1.20422 0.98938 0.94174 0.98094 1.21082 1.04488 0.97896 0.99892 1.17610 0.90794 0.91095 0.91013 1.19572 1.06612 1.05158 1.17393 0.90154 1.25973 0.96853 0.93919 0.97953 1.69774 1.18896 1.16965 1.35107 0.86309 0.78788 0.79362 0.81955 1.18733 1.20211 1.18986 1.21719 0.97266 0.95487 0.96873 0.93228 0.90434 0.93163 0.90435 0.92673 0.92905 0.93010 0.91558 0.91672 0.92704 0.92228 0.91318 0.92363 0.92542 0.92362 0.92036 0.91626 0.76607 0.89430 0.88979 0.88680 0.90388 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 8.60 37.16 0.32 -1.07 16 2 C -0.10 -0.96 2.44 -90.63 -0.22 -1.18 16 3 C -0.15 -1.25 9.07 37.16 0.34 -0.91 16 4 C -0.10 -0.90 4.01 -26.73 -0.11 -1.00 16 5 C -0.08 -0.77 0.56 -154.50 -0.09 -0.86 16 6 C -0.15 -1.41 6.39 37.16 0.24 -1.18 16 7 C -0.14 -1.41 8.21 37.16 0.30 -1.11 16 8 C 0.13 1.83 4.31 -4.04 -0.02 1.81 16 9 N -0.73 -12.23 4.99 -61.23 -0.31 -12.54 16 10 C 0.56 12.47 7.77 -12.31 -0.10 12.38 16 11 O -0.55 -13.98 16.33 5.32 0.09 -13.90 16 12 C -0.13 -3.06 5.87 -105.04 -0.62 -3.67 16 13 C -0.22 -4.62 9.55 -38.92 -0.37 -5.00 16 14 C -0.10 -2.10 10.01 -39.73 -0.40 -2.50 16 15 C -0.21 -5.11 9.78 -38.81 -0.38 -5.49 16 16 C 0.10 2.60 5.59 -106.87 -0.60 2.00 16 17 C -0.46 -12.11 9.06 -37.73 -0.34 -12.45 16 18 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 19 C 0.07 1.83 5.18 -17.35 -0.09 1.74 16 20 N -0.78 -20.89 10.81 55.55 0.60 -20.29 16 21 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 25 C -0.09 -2.52 8.24 -38.44 -0.32 -2.83 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.63 3.85 -51.93 -0.20 0.43 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.84 5.74 -51.92 -0.30 0.54 16 30 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 33 H 0.07 0.53 7.93 -51.93 -0.41 0.12 16 34 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 35 H 0.05 0.54 7.11 -51.93 -0.37 0.18 16 36 H 0.06 0.48 7.45 -51.93 -0.39 0.09 16 37 H 0.07 0.69 5.97 -51.93 -0.31 0.37 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.60 7.00 -51.93 -0.36 0.24 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.97 6.12 -51.93 -0.32 0.66 16 43 H 0.40 5.83 4.33 -40.82 -0.18 5.65 16 44 H 0.09 1.53 6.38 -52.49 -0.33 1.20 16 45 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 47 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 48 H 0.14 3.99 5.61 -52.49 -0.29 3.70 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -29.33 370.52 -9.15 -38.48 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.65 Total: 10.13 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -2.44 Total: -21.32 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.29 Total: -32.83 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.33 -9.15 -38.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175347720.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.561 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds