Wall clock time and date at job start Tue Mar 31 2020 08:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47072 * 2 1 4 4 C 1.52991 * 109.47310 * 120.00247 * 2 1 3 5 5 C 1.53006 * 109.47308 * 83.49700 * 4 2 1 6 6 C 1.53001 * 109.47134 * 302.54195 * 5 4 2 7 7 C 1.52997 * 109.47277 * 182.53833 * 5 4 2 8 8 C 1.53006 * 109.46705 * 62.53747 * 5 4 2 9 9 N 1.46498 * 109.46983 * 180.02562 * 8 5 4 10 10 C 1.34773 * 120.00160 * 180.02562 * 9 8 5 11 11 O 1.21552 * 120.00024 * 359.97438 * 10 9 8 12 12 C 1.47889 * 119.99894 * 180.02562 * 10 9 8 13 13 C 1.39918 * 120.02737 * 359.96905 * 12 10 9 14 14 C 1.38331 * 120.35776 * 180.02562 * 13 12 10 15 15 C 1.37751 * 120.41387 * 0.02562 * 14 13 12 16 16 C 1.40754 * 120.03703 * 359.97438 * 15 14 13 17 17 C 1.41441 * 120.17757 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99560 * 23.31846 * 17 16 15 19 19 C 1.39930 * 119.99992 * 203.32122 * 17 16 15 20 20 N 1.30821 * 120.00304 * 16.61816 * 19 17 16 21 21 Si 1.86804 * 119.99924 * 196.61557 * 19 17 16 22 22 H 1.48506 * 109.47146 * 59.99966 * 21 19 17 23 23 H 1.48504 * 109.47209 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46949 * 300.00285 * 21 19 17 25 25 C 1.38999 * 120.01955 * 180.02562 * 12 10 9 26 26 H 1.09007 * 109.47013 * 62.28413 * 1 2 3 27 27 H 1.09005 * 109.47344 * 182.28015 * 1 2 3 28 28 H 1.08996 * 109.47092 * 302.28387 * 1 2 3 29 29 H 1.09007 * 109.46977 * 240.00564 * 2 1 3 30 30 H 1.09000 * 109.47093 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47518 * 300.00274 * 3 2 1 32 32 H 1.09007 * 109.47284 * 60.00399 * 3 2 1 33 33 H 1.08999 * 109.46958 * 323.50162 * 4 2 1 34 34 H 1.08997 * 109.47453 * 203.49640 * 4 2 1 35 35 H 1.08998 * 109.47263 * 190.01218 * 6 5 4 36 36 H 1.09004 * 109.46538 * 310.00999 * 6 5 4 37 37 H 1.08999 * 109.46866 * 70.00634 * 6 5 4 38 38 H 1.08999 * 109.47440 * 294.18007 * 7 5 4 39 39 H 1.09001 * 109.47000 * 54.18067 * 7 5 4 40 40 H 1.09004 * 109.47172 * 174.18200 * 7 5 4 41 41 H 1.09002 * 109.46847 * 60.00436 * 8 5 4 42 42 H 1.09000 * 109.47219 * 299.99885 * 8 5 4 43 43 H 0.97002 * 119.99768 * 0.02562 * 9 8 5 44 44 H 1.07994 * 119.82162 * 0.02562 * 13 12 10 45 45 H 1.07998 * 119.79223 * 180.02562 * 14 13 12 46 46 H 1.07998 * 119.97930 * 179.97438 * 15 14 13 47 47 H 0.96999 * 120.00181 * 180.02562 * 20 19 17 48 48 H 1.07996 * 120.20671 * 359.69321 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 2.0560 -2.2302 0.9961 6 6 0.6507 -2.6978 0.6120 7 6 2.5057 -2.9555 2.2659 8 6 3.0276 -2.5459 -0.1430 9 7 3.0425 -3.9905 -0.3857 10 6 3.8317 -4.5037 -1.3502 11 8 4.5307 -3.7678 -2.0191 12 6 3.8463 -5.9620 -1.5956 13 6 3.0415 -6.8095 -0.8264 14 6 3.0502 -8.1747 -1.0497 15 6 3.8512 -8.7156 -2.0312 16 6 4.6675 -7.8788 -2.8151 17 6 5.4907 -8.4310 -3.8240 18 1 5.2446 -9.3893 -4.2573 19 6 6.6239 -7.7359 -4.2608 20 7 7.1098 -6.7583 -3.5399 21 14 7.4429 -8.2039 -5.8731 22 1 6.4727 -8.0436 -6.9860 23 1 8.6151 -7.3227 -6.1070 24 1 7.8922 -9.6178 -5.8080 25 6 4.6604 -6.4918 -2.5899 26 1 -0.3633 0.4780 -0.9098 27 1 -0.3634 -1.0269 0.0409 28 1 -0.3633 0.5489 0.8688 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.3822 -0.5009 2.0899 34 1 3.0496 -0.3807 1.4786 35 1 0.6195 -3.7873 0.6053 36 1 -0.0692 -2.3181 1.3370 37 1 0.4008 -2.3210 -0.3798 38 1 3.5434 -2.7011 2.4815 39 1 1.8756 -2.6501 3.1012 40 1 2.4185 -4.0322 2.1195 41 1 4.0287 -2.2127 0.1307 42 1 2.7072 -2.0291 -1.0476 43 1 2.4844 -4.5777 0.1478 44 1 2.4102 -6.3957 -0.0541 45 1 2.4251 -8.8204 -0.4509 46 1 3.8528 -9.7825 -2.1993 47 1 7.8951 -6.2762 -3.8428 48 1 5.2802 -5.8410 -3.1888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175347720.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:45 Heat of formation + Delta-G solvation = -60.198473 kcal Electronic energy + Delta-G solvation = -24954.543293 eV Core-core repulsion = 21586.383884 eV Total energy + Delta-G solvation = -3368.159408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15883 -39.72842 -38.66514 -35.99682 -35.57148 -33.82547 -31.92556 -31.25528 -29.16620 -27.97120 -27.45457 -27.13416 -26.78225 -23.90263 -22.77352 -21.28306 -21.22055 -20.03692 -19.31332 -17.90279 -17.32094 -16.83291 -16.42990 -16.33120 -15.95500 -15.60163 -15.32637 -14.99597 -14.93928 -14.65616 -14.38132 -14.27719 -14.15364 -13.62206 -13.46434 -13.05790 -12.95070 -12.90622 -12.80586 -12.74871 -12.73277 -12.57455 -12.52205 -12.20694 -11.89743 -11.84752 -11.61877 -11.52770 -11.43058 -11.26694 -11.07610 -10.91862 -10.75278 -10.08395 -9.46879 -9.37903 -8.65165 -6.38733 0.38890 1.01778 1.35845 1.47878 1.50527 2.11001 2.19080 2.30135 2.79389 3.61893 3.70594 3.77281 3.89833 4.06367 4.12363 4.22172 4.25311 4.41794 4.55158 4.59951 4.60105 4.71405 4.79834 4.85761 4.88776 4.90537 4.92609 4.98538 5.02679 5.05600 5.08369 5.12152 5.15669 5.19550 5.21325 5.32374 5.34228 5.43614 5.47815 5.50727 5.53983 5.55510 5.61777 5.86970 5.92931 6.06885 6.28763 6.51860 6.70206 6.87551 6.95186 7.33198 8.29793 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020520 B = 0.003189 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.181488 B = 8779.061392 C = 9623.825274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.106 4.106 3 C -0.146 4.146 4 C -0.096 4.096 5 C -0.065 4.065 6 C -0.149 4.149 7 C -0.144 4.144 8 C 0.127 3.873 9 N -0.707 5.707 10 C 0.557 3.443 11 O -0.592 6.592 12 C -0.140 4.140 13 C -0.198 4.198 14 C -0.095 4.095 15 C -0.218 4.218 16 C 0.066 3.934 17 C -0.496 4.496 18 H 0.085 0.915 19 C 0.027 3.973 20 N -0.825 5.825 21 Si 0.984 3.016 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.133 4.133 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.411 0.589 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.109 0.891 47 H 0.286 0.714 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.625 10.445 11.081 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.125 4.125 3 C -0.203 4.203 4 C -0.133 4.133 5 C -0.065 4.065 6 C -0.205 4.205 7 C -0.201 4.201 8 C 0.004 3.996 9 N -0.361 5.361 10 C 0.347 3.653 11 O -0.474 6.474 12 C -0.143 4.143 13 C -0.218 4.218 14 C -0.113 4.113 15 C -0.238 4.238 16 C 0.063 3.937 17 C -0.525 4.525 18 H 0.103 0.897 19 C -0.187 4.187 20 N -0.451 5.451 21 Si 0.805 3.195 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.176 1.176 25 C -0.154 4.154 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.250 0.750 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.127 0.873 47 H 0.097 0.903 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.952 11.161 10.666 19.524 hybrid contribution 0.788 -0.310 -0.797 1.162 sum -11.164 10.851 9.870 18.433 Atomic orbital electron populations 1.22351 0.94375 1.03795 1.01651 1.21239 0.96854 0.96195 0.98180 1.21849 1.00551 0.95935 1.02004 1.21670 1.01827 0.91686 0.98154 1.20753 0.94942 0.96999 0.93812 1.22228 0.95110 1.01042 1.02164 1.21912 1.01439 1.00057 0.96675 1.21595 0.99382 0.79869 0.98729 1.45776 1.44753 1.09085 1.36465 1.18785 0.78680 0.88443 0.79437 1.90666 1.44134 1.62262 1.50362 1.19810 1.01856 0.91760 1.00850 1.20814 1.03956 0.93579 1.03429 1.20917 0.98250 0.94860 0.97262 1.21403 1.04010 0.98478 0.99935 1.17962 0.92044 0.91461 0.92193 1.19868 1.07733 1.06008 1.18909 0.89728 1.26885 0.97164 0.93525 1.01159 1.69888 1.19617 1.18510 1.37041 0.85218 0.77659 0.79557 0.77099 1.18463 1.19697 1.17577 1.21526 0.99339 0.95598 0.98901 0.93575 0.90139 0.91914 0.92719 0.93414 0.92981 0.91695 0.89431 0.92091 0.92799 0.89903 0.91994 0.93226 0.90177 0.92660 0.93495 0.92537 0.75046 0.84844 0.84295 0.87308 0.90348 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.60 71.98 0.62 -1.74 16 2 C -0.11 -1.81 2.44 -10.80 -0.03 -1.84 16 3 C -0.15 -2.33 9.07 71.98 0.65 -1.68 16 4 C -0.10 -1.50 4.01 30.59 0.12 -1.38 16 5 C -0.06 -1.18 0.56 -52.18 -0.03 -1.21 16 6 C -0.15 -2.37 6.39 71.98 0.46 -1.91 16 7 C -0.14 -2.40 8.21 71.98 0.59 -1.81 16 8 C 0.13 3.55 4.31 86.38 0.37 3.92 16 9 N -0.71 -22.94 4.99 -465.92 -2.32 -25.27 16 10 C 0.56 25.21 7.77 86.80 0.67 25.89 16 11 O -0.59 -31.89 16.33 -3.88 -0.06 -31.96 16 12 C -0.14 -6.73 5.87 -20.13 -0.12 -6.85 16 13 C -0.20 -7.85 9.55 22.70 0.22 -7.63 16 14 C -0.10 -3.77 10.01 22.18 0.22 -3.55 16 15 C -0.22 -10.28 9.78 22.77 0.22 -10.06 16 16 C 0.07 3.62 5.59 -21.32 -0.12 3.50 16 17 C -0.50 -27.31 9.06 23.47 0.21 -27.09 16 18 H 0.08 4.37 7.90 -2.91 -0.02 4.34 16 19 C 0.03 1.45 5.18 85.25 0.44 1.89 16 20 N -0.82 -46.77 10.81 21.82 0.24 -46.53 16 21 Si 0.98 40.08 29.59 68.60 2.03 42.11 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 25 C -0.13 -7.53 8.24 23.01 0.19 -7.35 16 26 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.08 1.10 3.85 -2.38 -0.01 1.09 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 1.19 5.74 -2.38 -0.01 1.17 16 30 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.09 1.07 7.93 -2.39 -0.02 1.05 16 34 H 0.06 1.02 7.91 -2.39 -0.02 1.01 16 35 H 0.05 0.87 7.11 -2.39 -0.02 0.86 16 36 H 0.08 0.98 7.45 -2.38 -0.02 0.96 16 37 H 0.06 1.10 5.97 -2.39 -0.01 1.08 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 0.96 7.00 -2.38 -0.02 0.94 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.72 6.12 -2.39 -0.01 1.70 16 43 H 0.41 10.93 4.33 -92.71 -0.40 10.53 16 44 H 0.13 4.01 6.38 -2.91 -0.02 3.99 16 45 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 46 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 47 H 0.29 15.00 8.30 -92.71 -0.77 14.23 16 48 H 0.10 6.42 5.61 -2.91 -0.02 6.40 16 Total: -1.00 -68.82 370.52 5.13 -63.68 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.55 Total: 36.87 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 4.71 Total: -38.91 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -2.09 Total: -71.80 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.06 Total: -31.96 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -68.82 5.13 -63.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175347720.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.486 kcal (2) G-P(sol) polarization free energy of solvation -68.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds