Wall clock time and date at job start Tue Mar 31 2020 08:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47168 * 2 1 4 4 C 1.38237 * 120.00088 * 89.99855 * 3 2 1 5 5 C 1.38238 * 119.99833 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00071 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00115 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47337 * 305.94093 * 7 6 5 9 9 C 1.52998 * 109.47320 * 185.93642 * 7 6 5 10 10 C 1.50698 * 109.46665 * 65.93605 * 7 6 5 11 11 O 1.21278 * 120.00483 * 355.55725 * 10 7 6 12 12 N 1.34777 * 119.99952 * 175.55595 * 10 7 6 13 13 C 1.46500 * 120.00156 * 180.02562 * 12 10 7 14 14 H 1.09000 * 109.47277 * 325.00149 * 13 12 10 15 15 C 1.50702 * 109.47237 * 204.99766 * 13 12 10 16 16 H 1.08002 * 120.00116 * 0.02562 * 15 13 12 17 17 C 1.37878 * 120.00056 * 179.97438 * 15 13 12 18 18 N 1.31510 * 119.99903 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99769 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47668 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46876 * 120.00575 * 19 17 15 22 22 H 1.48498 * 109.47201 * 240.00164 * 19 17 15 23 23 C 1.53001 * 109.47175 * 85.00394 * 13 12 10 24 24 C 1.53012 * 109.46606 * 294.99804 * 23 13 12 25 25 C 1.38233 * 120.00074 * 0.26220 * 6 5 4 26 26 C 1.38235 * 119.99994 * 359.48448 * 25 6 5 27 27 H 1.09003 * 109.47165 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46811 * 300.00300 * 1 2 3 29 29 H 1.08997 * 109.46890 * 60.00313 * 1 2 3 30 30 H 1.08998 * 109.46811 * 239.99700 * 2 1 3 31 31 H 1.09006 * 109.46745 * 119.99768 * 2 1 3 32 32 H 1.07993 * 120.00061 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.99701 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47252 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.46794 * 299.99566 * 8 7 6 36 36 H 1.08994 * 109.47179 * 59.99510 * 8 7 6 37 37 H 1.08998 * 109.47017 * 300.00088 * 9 7 6 38 38 H 1.09002 * 109.47173 * 60.00213 * 9 7 6 39 39 H 1.08998 * 109.46899 * 180.02562 * 9 7 6 40 40 H 0.97009 * 119.99867 * 0.02562 * 12 10 7 41 41 H 0.97000 * 120.00119 * 179.97438 * 18 17 15 42 42 H 1.08990 * 109.47470 * 54.99698 * 23 13 12 43 43 H 1.08996 * 109.47275 * 175.00393 * 23 13 12 44 44 H 1.09000 * 109.47150 * 300.00134 * 24 23 13 45 45 H 1.08996 * 109.46823 * 60.00312 * 24 23 13 46 46 H 1.09004 * 109.46493 * 180.02562 * 24 23 13 47 47 H 1.08007 * 120.00475 * 179.72375 * 25 6 5 48 48 H 1.08003 * 120.00191 * 180.25328 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7241 3.3756 1.1971 6 6 2.9545 4.0272 0.0000 7 6 3.4568 5.4480 -0.0001 8 6 2.5258 6.3182 0.8465 9 6 3.4862 5.9785 -1.4349 10 6 4.8474 5.4891 0.5792 11 8 5.3471 4.4797 1.0290 12 7 5.5359 6.6476 0.5975 13 6 6.8879 6.6874 1.1602 14 1 6.9508 6.0000 2.0038 15 6 7.1963 8.0864 1.6282 16 1 6.4587 8.8676 1.5179 17 6 8.4196 8.3688 2.1981 18 7 9.3175 7.4174 2.3328 19 14 8.8015 10.1027 2.7787 20 1 7.6334 10.9812 2.5162 21 1 9.0893 10.0847 4.2355 22 1 9.9852 10.6204 2.0466 23 6 7.8987 6.2738 0.0887 24 6 7.6636 4.8118 -0.2968 25 6 2.7185 3.3775 -1.1972 26 6 2.2622 2.0727 -1.1972 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 2.0824 1.5635 2.1324 33 1 2.9037 3.8848 2.1324 34 1 2.8894 7.3458 0.8468 35 1 1.5200 6.2885 0.4274 36 1 2.5049 5.9403 1.8686 37 1 4.1496 5.3586 -2.0379 38 1 2.4804 5.9488 -1.8539 39 1 3.8500 7.0060 -1.4349 40 1 5.1361 7.4551 0.2381 41 1 10.1783 7.6161 2.7334 42 1 7.7751 6.9058 -0.7906 43 1 8.9097 6.3884 0.4794 44 1 7.7871 4.1798 0.5826 45 1 6.6525 4.6972 -0.6875 46 1 8.3840 4.5170 -1.0599 47 1 2.8942 3.8881 -2.1326 48 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183859193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:24 Heat of formation + Delta-G solvation = -39.801368 kcal Electronic energy + Delta-G solvation = -25568.265072 eV Core-core repulsion = 22200.990148 eV Total energy + Delta-G solvation = -3367.274923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26503 -38.60166 -35.81367 -34.78754 -33.28304 -32.15833 -30.90456 -30.69622 -28.57430 -27.32741 -26.87813 -24.30714 -23.37028 -22.49895 -22.08429 -20.82725 -19.60344 -18.88785 -17.16893 -16.27040 -15.69001 -15.40801 -15.31415 -14.76571 -14.47542 -14.22929 -14.03324 -13.71295 -13.39432 -13.27222 -13.20403 -12.71777 -12.67581 -12.40162 -12.10623 -11.95107 -11.79534 -11.67985 -11.51982 -11.38983 -11.25677 -11.21812 -11.05869 -10.94981 -10.82515 -10.57332 -10.46606 -10.28596 -10.13599 -9.59611 -9.01768 -8.85137 -8.65321 -8.48495 -8.29317 -7.75346 -6.11278 -4.20493 1.51796 1.63977 3.23406 3.31472 3.33796 3.48112 3.84790 4.24088 4.43410 4.65373 4.81008 4.85085 5.01911 5.11810 5.17064 5.20064 5.27139 5.31912 5.46165 5.49413 5.60558 5.63176 5.69116 5.74840 5.83698 5.87627 5.95098 5.97489 6.03165 6.15608 6.24687 6.27984 6.29550 6.42177 6.49697 6.63742 6.70008 6.76595 6.87100 7.07429 7.20004 7.24144 7.40721 7.51426 7.64530 7.76813 7.93108 8.20683 8.72745 8.80956 9.20819 9.47493 10.93985 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026205 B = 0.003348 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.250512 B = 8361.450026 C = 8565.003355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.120 4.120 5 C -0.082 4.082 6 C -0.052 4.052 7 C -0.049 4.049 8 C -0.135 4.135 9 C -0.141 4.141 10 C 0.512 3.488 11 O -0.539 6.539 12 N -0.707 5.707 13 C 0.271 3.729 14 H 0.048 0.952 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.882 5.882 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.126 4.126 24 C -0.136 4.136 25 C -0.115 4.115 26 C -0.123 4.123 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.386 0.614 41 H 0.263 0.737 42 H 0.030 0.970 43 H 0.098 0.902 44 H 0.048 0.952 45 H 0.039 0.961 46 H 0.021 0.979 47 H 0.123 0.877 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.256 -7.770 -6.834 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.138 4.138 5 C -0.100 4.100 6 C -0.052 4.052 7 C -0.053 4.053 8 C -0.192 4.192 9 C -0.198 4.198 10 C 0.296 3.704 11 O -0.417 6.417 12 N -0.354 5.354 13 C 0.169 3.831 14 H 0.066 0.934 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.165 4.165 24 C -0.194 4.194 25 C -0.133 4.133 26 C -0.141 4.141 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.219 0.781 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.116 0.884 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.040 0.960 47 H 0.141 0.859 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.667 -8.514 -6.419 18.951 hybrid contribution 0.258 1.337 0.148 1.369 sum -15.410 -7.177 -6.271 18.119 Atomic orbital electron populations 1.21742 0.95015 1.01343 1.02140 1.20509 0.95899 0.93076 1.02592 1.19799 0.99975 0.95929 0.93335 1.20926 1.00720 0.94885 0.97259 1.20905 0.96812 0.94484 0.97783 1.19322 0.98224 0.94306 0.93341 1.19799 0.94631 0.93456 0.97365 1.21838 0.98520 0.99241 0.99638 1.21923 1.02265 1.01460 0.94187 1.20031 0.86219 0.84385 0.79775 1.90682 1.69935 1.33837 1.47241 1.46464 1.18675 1.09391 1.60910 1.18756 0.75439 0.96935 0.91923 0.93433 1.21273 1.00481 0.94468 1.40830 0.92124 1.24886 0.95971 0.97415 0.95438 1.69907 1.06537 1.31998 1.43493 0.86427 0.78315 0.84097 0.78454 1.19763 1.20926 1.20905 1.21925 1.04097 0.92649 0.97867 1.21832 0.98947 0.98933 0.99641 1.21084 0.99803 0.94756 0.97682 1.20878 1.01206 0.94833 0.97172 0.92698 0.92609 0.92662 0.91317 0.91245 0.86553 0.86331 0.91536 0.91868 0.91972 0.91849 0.91671 0.91626 0.78136 0.92664 0.95141 0.88408 0.93248 0.94218 0.96017 0.85912 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.90 37.16 0.37 -0.82 16 2 C -0.08 -0.80 6.06 -27.88 -0.17 -0.97 16 3 C -0.09 -1.12 5.13 -104.62 -0.54 -1.66 16 4 C -0.12 -1.63 9.70 -39.58 -0.38 -2.01 16 5 C -0.08 -1.25 8.15 -39.58 -0.32 -1.57 16 6 C -0.05 -0.78 4.33 -104.63 -0.45 -1.23 16 7 C -0.05 -0.73 0.72 -156.81 -0.11 -0.84 16 8 C -0.13 -1.72 8.17 37.16 0.30 -1.42 16 9 C -0.14 -1.74 7.01 37.16 0.26 -1.48 16 10 C 0.51 9.98 4.97 -10.99 -0.05 9.93 16 11 O -0.54 -12.52 12.47 5.56 0.07 -12.45 16 12 N -0.71 -14.40 4.84 -54.93 -0.27 -14.67 16 13 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 14 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 15 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 18 N -0.88 -24.71 11.29 55.43 0.63 -24.09 16 19 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.13 -3.09 5.45 -26.72 -0.15 -3.24 16 24 C -0.14 -3.10 8.52 37.16 0.32 -2.79 16 25 C -0.12 -1.56 8.99 -39.58 -0.36 -1.92 16 26 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.12 1.86 7.23 -52.49 -0.38 1.48 16 34 H 0.07 0.81 7.88 -51.93 -0.41 0.40 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.83 7.08 -51.93 -0.37 0.46 16 37 H 0.06 0.82 7.25 -51.93 -0.38 0.45 16 38 H 0.06 0.66 7.78 -51.93 -0.40 0.25 16 39 H 0.06 0.76 7.33 -51.93 -0.38 0.38 16 40 H 0.39 6.92 7.43 -40.82 -0.30 6.62 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 44 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 45 H 0.04 0.88 5.65 -51.93 -0.29 0.59 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.12 1.45 5.91 -52.48 -0.31 1.14 16 48 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 374.59 15.07 5.65 5.65 Total: -1.00 -30.10 374.59 -9.26 -39.36 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -8.10 Total: 8.55 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -2.22 Total: -17.89 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.36 Total: -38.75 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.10 -9.26 -39.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183859193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.439 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds