Wall clock time and date at job start Tue Mar 31 2020 08:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47168 * 2 1 4 4 C 1.38237 * 120.00088 * 89.99855 * 3 2 1 5 5 C 1.38238 * 119.99833 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00071 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00115 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47337 * 305.94093 * 7 6 5 9 9 C 1.52998 * 109.47320 * 185.93642 * 7 6 5 10 10 C 1.50698 * 109.46665 * 65.93605 * 7 6 5 11 11 O 1.21278 * 120.00483 * 355.55725 * 10 7 6 12 12 N 1.34777 * 119.99952 * 175.55595 * 10 7 6 13 13 C 1.46500 * 120.00156 * 180.02562 * 12 10 7 14 14 H 1.09000 * 109.47277 * 325.00149 * 13 12 10 15 15 C 1.50702 * 109.47237 * 204.99766 * 13 12 10 16 16 H 1.08002 * 120.00116 * 0.02562 * 15 13 12 17 17 C 1.37878 * 120.00056 * 179.97438 * 15 13 12 18 18 N 1.31510 * 119.99903 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99769 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47668 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46876 * 120.00575 * 19 17 15 22 22 H 1.48498 * 109.47201 * 240.00164 * 19 17 15 23 23 C 1.53001 * 109.47175 * 85.00394 * 13 12 10 24 24 C 1.53012 * 109.46606 * 294.99804 * 23 13 12 25 25 C 1.38233 * 120.00074 * 0.26220 * 6 5 4 26 26 C 1.38235 * 119.99994 * 359.48448 * 25 6 5 27 27 H 1.09003 * 109.47165 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46811 * 300.00300 * 1 2 3 29 29 H 1.08997 * 109.46890 * 60.00313 * 1 2 3 30 30 H 1.08998 * 109.46811 * 239.99700 * 2 1 3 31 31 H 1.09006 * 109.46745 * 119.99768 * 2 1 3 32 32 H 1.07993 * 120.00061 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.99701 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47252 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.46794 * 299.99566 * 8 7 6 36 36 H 1.08994 * 109.47179 * 59.99510 * 8 7 6 37 37 H 1.08998 * 109.47017 * 300.00088 * 9 7 6 38 38 H 1.09002 * 109.47173 * 60.00213 * 9 7 6 39 39 H 1.08998 * 109.46899 * 180.02562 * 9 7 6 40 40 H 0.97009 * 119.99867 * 0.02562 * 12 10 7 41 41 H 0.97000 * 120.00119 * 179.97438 * 18 17 15 42 42 H 1.08990 * 109.47470 * 54.99698 * 23 13 12 43 43 H 1.08996 * 109.47275 * 175.00393 * 23 13 12 44 44 H 1.09000 * 109.47150 * 300.00134 * 24 23 13 45 45 H 1.08996 * 109.46823 * 60.00312 * 24 23 13 46 46 H 1.09004 * 109.46493 * 180.02562 * 24 23 13 47 47 H 1.08007 * 120.00475 * 179.72375 * 25 6 5 48 48 H 1.08003 * 120.00191 * 180.25328 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1972 5 6 2.7241 3.3756 1.1971 6 6 2.9545 4.0272 0.0000 7 6 3.4568 5.4480 -0.0001 8 6 2.5258 6.3182 0.8465 9 6 3.4862 5.9785 -1.4349 10 6 4.8474 5.4891 0.5792 11 8 5.3471 4.4797 1.0290 12 7 5.5359 6.6476 0.5975 13 6 6.8879 6.6874 1.1602 14 1 6.9508 6.0000 2.0038 15 6 7.1963 8.0864 1.6282 16 1 6.4587 8.8676 1.5179 17 6 8.4196 8.3688 2.1981 18 7 9.3175 7.4174 2.3328 19 14 8.8015 10.1027 2.7787 20 1 7.6334 10.9812 2.5162 21 1 9.0893 10.0847 4.2355 22 1 9.9852 10.6204 2.0466 23 6 7.8987 6.2738 0.0887 24 6 7.6636 4.8118 -0.2968 25 6 2.7185 3.3775 -1.1972 26 6 2.2622 2.0727 -1.1972 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 2.0824 1.5635 2.1324 33 1 2.9037 3.8848 2.1324 34 1 2.8894 7.3458 0.8468 35 1 1.5200 6.2885 0.4274 36 1 2.5049 5.9403 1.8686 37 1 4.1496 5.3586 -2.0379 38 1 2.4804 5.9488 -1.8539 39 1 3.8500 7.0060 -1.4349 40 1 5.1361 7.4551 0.2381 41 1 10.1783 7.6161 2.7334 42 1 7.7751 6.9058 -0.7906 43 1 8.9097 6.3884 0.4794 44 1 7.7871 4.1798 0.5826 45 1 6.6525 4.6972 -0.6875 46 1 8.3840 4.5170 -1.0599 47 1 2.8942 3.8881 -2.1326 48 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183859193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:22 Heat of formation + Delta-G solvation = -55.373085 kcal Electronic energy + Delta-G solvation = -25568.940312 eV Core-core repulsion = 22200.990148 eV Total energy + Delta-G solvation = -3367.950164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56146 -39.90633 -37.22663 -36.41987 -34.48814 -33.85417 -32.50126 -31.92058 -29.59107 -28.81229 -28.29002 -25.43367 -25.02362 -23.82685 -23.17718 -22.07466 -21.30684 -20.40676 -18.75483 -17.62868 -17.26845 -16.98538 -16.46637 -16.21460 -15.97863 -15.62504 -15.01886 -14.90248 -14.60424 -14.57568 -14.31228 -14.15238 -14.02641 -13.56952 -13.29558 -13.23337 -13.16996 -13.10322 -12.91832 -12.85531 -12.70137 -12.62077 -12.44639 -12.15204 -12.13342 -12.04112 -11.87717 -11.59997 -11.54432 -11.46163 -11.02629 -10.57692 -10.36524 -9.72856 -9.56083 -9.35062 -8.15625 -6.32815 0.47241 0.58992 1.43187 1.44567 1.56152 1.94376 2.36444 2.62665 3.02787 3.14050 3.58106 3.84028 3.96361 4.01388 4.12397 4.17194 4.21598 4.41128 4.48146 4.54661 4.56405 4.59457 4.69480 4.75270 4.75816 4.77782 4.86001 4.87036 4.93327 5.07066 5.08595 5.11335 5.17362 5.23015 5.24388 5.27717 5.30641 5.41464 5.44464 5.57130 5.60513 5.66533 5.77742 5.79078 5.81618 5.95814 6.18382 6.19524 6.76389 7.06224 7.34964 7.66093 8.89809 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026205 B = 0.003348 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.250512 B = 8361.450026 C = 8565.003355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.133 4.133 5 C -0.104 4.104 6 C -0.072 4.072 7 C -0.039 4.039 8 C -0.132 4.132 9 C -0.139 4.139 10 C 0.508 3.492 11 O -0.581 6.581 12 N -0.703 5.703 13 C 0.281 3.719 14 H -0.006 1.006 15 C -0.544 4.544 16 H 0.071 0.929 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.969 3.031 20 H -0.260 1.260 21 H -0.286 1.286 22 H -0.279 1.279 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.126 4.126 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.401 0.599 41 H 0.264 0.736 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.021 0.979 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.142 0.858 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.156 -7.243 -8.820 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.151 4.151 5 C -0.122 4.122 6 C -0.072 4.072 7 C -0.042 4.042 8 C -0.190 4.190 9 C -0.196 4.196 10 C 0.295 3.705 11 O -0.461 6.461 12 N -0.352 5.352 13 C 0.177 3.823 14 H 0.012 0.988 15 C -0.583 4.583 16 H 0.089 0.911 17 C -0.185 4.185 18 N -0.554 5.554 19 Si 0.794 3.206 20 H -0.183 1.183 21 H -0.212 1.212 22 H -0.205 1.205 23 C -0.158 4.158 24 C -0.178 4.178 25 C -0.138 4.138 26 C -0.144 4.144 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.236 0.764 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.040 0.960 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.160 0.840 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.607 -7.970 -8.424 21.083 hybrid contribution 0.826 1.065 0.797 1.565 sum -16.781 -6.905 -7.627 19.684 Atomic orbital electron populations 1.21713 0.93764 1.02406 1.01965 1.20573 0.96891 0.91239 1.03317 1.20167 0.98866 0.97225 0.92849 1.21135 1.00914 0.94506 0.98550 1.20938 0.98300 0.95512 0.97489 1.19441 0.99328 0.94601 0.93853 1.19754 0.91177 0.94373 0.98940 1.21852 0.99531 0.98910 0.98670 1.21959 1.04076 1.01490 0.92063 1.20943 0.87835 0.83128 0.78625 1.90661 1.71400 1.35254 1.48833 1.46223 1.17321 1.10650 1.60986 1.18308 0.77984 0.95328 0.90681 0.98837 1.21608 1.00817 0.95042 1.40787 0.91060 1.25771 0.95873 1.01384 0.95521 1.70062 1.06934 1.34177 1.44261 0.85345 0.78446 0.79325 0.77503 1.18329 1.21176 1.20475 1.21766 1.02373 0.93828 0.97830 1.21654 0.99821 0.97351 0.98971 1.21360 0.99365 0.95306 0.97756 1.21253 1.00248 0.94604 0.98287 0.91036 0.93187 0.92446 0.90093 0.91065 0.85609 0.88206 0.90887 0.89184 0.93506 0.92488 0.88642 0.90849 0.76445 0.92697 0.93992 0.91201 0.95996 0.93748 0.93786 0.83989 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.90 71.98 0.71 -1.28 16 2 C -0.08 -1.42 6.06 29.85 0.18 -1.24 16 3 C -0.09 -2.14 5.13 -19.87 -0.10 -2.24 16 4 C -0.13 -3.63 9.70 22.27 0.22 -3.41 16 5 C -0.10 -3.28 8.15 22.27 0.18 -3.10 16 6 C -0.07 -2.12 4.33 -19.87 -0.09 -2.21 16 7 C -0.04 -1.13 0.72 -53.67 -0.04 -1.16 16 8 C -0.13 -3.23 8.17 71.98 0.59 -2.64 16 9 C -0.14 -3.06 7.01 71.98 0.50 -2.56 16 10 C 0.51 20.16 4.97 87.66 0.44 20.60 16 11 O -0.58 -28.21 12.47 -3.02 -0.04 -28.24 16 12 N -0.70 -28.95 4.84 -446.10 -2.16 -31.10 16 13 C 0.28 14.47 2.24 44.25 0.10 14.57 16 14 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 15 C -0.54 -28.79 8.73 25.60 0.22 -28.57 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C 0.01 0.78 5.29 84.66 0.45 1.23 16 18 N -0.92 -52.85 11.29 21.45 0.24 -52.61 16 19 Si 0.97 42.19 29.54 68.60 2.03 44.22 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 C -0.12 -5.94 5.45 30.60 0.17 -5.78 16 24 C -0.12 -5.61 8.52 71.99 0.61 -4.99 16 25 C -0.12 -3.02 8.99 22.27 0.20 -2.82 16 26 C -0.13 -2.87 9.70 22.27 0.22 -2.65 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.20 8.09 -2.39 -0.02 1.19 16 31 H 0.07 1.20 8.09 -2.38 -0.02 1.18 16 32 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.10 3.38 7.23 -2.91 -0.02 3.36 16 34 H 0.07 1.66 7.88 -2.39 -0.02 1.64 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.27 7.08 -2.39 -0.02 1.26 16 37 H 0.06 1.34 7.25 -2.39 -0.02 1.32 16 38 H 0.09 1.55 7.78 -2.39 -0.02 1.54 16 39 H 0.07 1.50 7.33 -2.39 -0.02 1.49 16 40 H 0.40 14.05 7.43 -92.70 -0.69 13.36 16 41 H 0.26 14.42 8.31 -92.71 -0.77 13.64 16 42 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 44 H 0.02 1.09 7.85 -2.39 -0.02 1.07 16 45 H 0.04 1.99 5.65 -2.39 -0.01 1.98 16 46 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 47 H 0.14 2.93 5.91 -2.91 -0.02 2.91 16 48 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -67.77 374.59 4.88 -62.89 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.25 Total: 33.11 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 4.56 Total: -28.26 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.92 Total: -83.71 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.04 Total: -28.24 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -67.77 4.88 -62.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183859193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.520 kcal (2) G-P(sol) polarization free energy of solvation -67.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds