Wall clock time and date at job start Tue Mar 31 2020 08:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46854 * 2 1 4 4 C 1.38231 * 120.00251 * 90.00202 * 3 2 1 5 5 C 1.38237 * 120.00096 * 179.97438 * 4 3 2 6 6 C 1.38231 * 119.99986 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00129 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46942 * 354.38883 * 7 6 5 9 9 C 1.52998 * 109.47130 * 234.39259 * 7 6 5 10 10 C 1.50700 * 109.47302 * 114.38943 * 7 6 5 11 11 O 1.21282 * 119.99751 * 354.51128 * 10 7 6 12 12 N 1.34772 * 120.00089 * 174.51389 * 10 7 6 13 13 C 1.46504 * 119.99935 * 179.72308 * 12 10 7 14 14 H 1.09000 * 109.46991 * 35.27742 * 13 12 10 15 15 C 1.50699 * 109.46814 * 155.27544 * 13 12 10 16 16 H 1.07998 * 120.00378 * 359.97438 * 15 13 12 17 17 C 1.37878 * 119.99732 * 180.02562 * 15 13 12 18 18 N 1.31519 * 120.00078 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99914 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47145 * 59.99446 * 19 17 15 21 21 H 1.48505 * 109.47012 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47019 * 299.99249 * 19 17 15 23 23 C 1.53001 * 109.46979 * 275.27504 * 13 12 10 24 24 C 1.53000 * 109.47137 * 65.00500 * 23 13 12 25 25 C 1.38234 * 119.99902 * 0.25383 * 6 5 4 26 26 C 1.38230 * 119.99958 * 270.01572 * 3 2 1 27 27 H 1.09000 * 109.47342 * 300.00409 * 1 2 3 28 28 H 1.09004 * 109.46792 * 60.00194 * 1 2 3 29 29 H 1.09005 * 109.47053 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47342 * 239.99591 * 2 1 3 31 31 H 1.09004 * 109.46792 * 119.99805 * 2 1 3 32 32 H 1.08003 * 120.00163 * 359.97438 * 4 3 2 33 33 H 1.08007 * 119.99519 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.46988 * 179.97438 * 8 7 6 35 35 H 1.08994 * 109.47454 * 300.00643 * 8 7 6 36 36 H 1.09008 * 109.47161 * 60.00105 * 8 7 6 37 37 H 1.09002 * 109.46628 * 299.99759 * 9 7 6 38 38 H 1.08996 * 109.47174 * 59.99392 * 9 7 6 39 39 H 1.08999 * 109.47010 * 180.02562 * 9 7 6 40 40 H 0.97002 * 119.99936 * 0.02562 * 12 10 7 41 41 H 0.97001 * 119.99524 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.46331 * 185.00157 * 23 13 12 43 43 H 1.08999 * 109.47210 * 304.99608 * 23 13 12 44 44 H 1.09003 * 109.47235 * 179.97438 * 24 23 13 45 45 H 1.08998 * 109.46742 * 299.99556 * 24 23 13 46 46 H 1.08999 * 109.47384 * 59.99811 * 24 23 13 47 47 H 1.08002 * 120.00142 * 179.72793 * 25 6 5 48 48 H 1.08010 * 120.00193 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3757 1.1971 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4482 -0.0002 8 6 3.4935 5.9760 1.4354 9 6 2.5207 6.3198 -0.8400 10 6 4.8439 5.4905 -0.5869 11 8 5.4120 4.4586 -0.8754 12 7 5.4534 6.6751 -0.7911 13 6 6.8045 6.7160 -1.3558 14 1 6.9189 5.9119 -2.0828 15 6 7.0249 8.0428 -2.0355 16 1 6.2371 8.7816 -2.0462 17 6 8.2318 8.3132 -2.6448 18 7 9.1910 7.4135 -2.6323 19 14 8.5052 9.9582 -3.4867 20 1 8.3501 11.0533 -2.4957 21 1 9.8748 9.9996 -4.0593 22 1 7.5083 10.1296 -4.5739 23 6 7.8312 6.5403 -0.2352 24 6 7.6888 5.1434 0.3726 25 6 2.7183 3.3776 -1.1972 26 6 2.2623 2.0726 -1.1971 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0823 1.5636 2.1325 33 1 2.9035 3.8849 2.1324 34 1 3.8572 7.0036 1.4354 35 1 2.4901 5.9453 1.8599 36 1 4.1602 5.3550 2.0339 37 1 2.4943 5.9437 -1.8627 38 1 1.5172 6.2892 -0.4156 39 1 2.8843 7.3474 -0.8404 40 1 4.9991 7.5004 -0.5599 41 1 10.0402 7.6039 -3.0606 42 1 8.8359 6.6592 -0.6410 43 1 7.6596 7.2914 0.5359 44 1 8.4205 5.0181 1.1707 45 1 6.6842 5.0245 0.7784 46 1 7.8605 4.3924 -0.3985 47 1 2.8940 3.8881 -2.1325 48 1 2.0817 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183859210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:26 Heat of formation + Delta-G solvation = -39.641603 kcal Electronic energy + Delta-G solvation = -25556.594291 eV Core-core repulsion = 22189.326295 eV Total energy + Delta-G solvation = -3367.267995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26438 -38.60664 -35.81469 -34.78306 -33.28035 -32.15597 -30.93002 -30.68616 -28.58096 -27.31187 -26.88779 -24.30808 -23.36722 -22.51137 -22.08145 -20.83001 -19.60152 -18.88706 -17.17012 -16.27969 -15.66683 -15.43725 -15.32165 -14.76897 -14.46658 -14.23750 -14.01117 -13.72290 -13.40125 -13.27138 -13.19795 -12.72653 -12.66662 -12.40937 -12.10300 -11.96724 -11.79339 -11.68755 -11.51239 -11.37363 -11.25951 -11.21290 -11.05531 -10.97751 -10.80441 -10.58086 -10.47152 -10.30209 -10.13367 -9.59676 -9.03324 -8.83774 -8.67360 -8.47930 -8.29129 -7.75164 -6.10796 -4.20236 1.51831 1.63172 3.25503 3.31079 3.31917 3.48136 3.84157 4.24145 4.43839 4.65097 4.81444 4.84193 5.01581 5.11428 5.16658 5.20264 5.27087 5.32211 5.45692 5.49221 5.59913 5.62848 5.68995 5.74807 5.83288 5.87550 5.94252 5.97282 6.03095 6.15351 6.24135 6.27776 6.29257 6.41983 6.49474 6.63301 6.69872 6.76084 6.86009 7.07198 7.19575 7.24016 7.40611 7.51503 7.64279 7.76985 7.93223 8.20841 8.72739 8.80949 9.20982 9.47639 10.94373 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.003342 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.069160 B = 8376.844243 C = 8463.926739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.049 4.049 7 C -0.049 4.049 8 C -0.139 4.139 9 C -0.136 4.136 10 C 0.512 3.488 11 O -0.539 6.539 12 N -0.707 5.707 13 C 0.272 3.728 14 H 0.048 0.952 15 C -0.534 4.534 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.127 4.127 24 C -0.136 4.136 25 C -0.087 4.087 26 C -0.118 4.118 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.386 0.614 41 H 0.265 0.735 42 H 0.098 0.902 43 H 0.030 0.970 44 H 0.021 0.979 45 H 0.039 0.961 46 H 0.048 0.952 47 H 0.118 0.882 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 -7.585 7.265 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.140 4.140 5 C -0.132 4.132 6 C -0.049 4.049 7 C -0.053 4.053 8 C -0.197 4.197 9 C -0.194 4.194 10 C 0.296 3.704 11 O -0.417 6.417 12 N -0.355 5.355 13 C 0.170 3.830 14 H 0.066 0.934 15 C -0.572 4.572 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.166 4.166 24 C -0.194 4.194 25 C -0.105 4.105 26 C -0.136 4.136 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.219 0.781 41 H 0.075 0.925 42 H 0.116 0.884 43 H 0.049 0.951 44 H 0.040 0.960 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.136 0.864 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.421 -8.348 6.965 18.868 hybrid contribution 0.149 1.323 -0.353 1.377 sum -15.271 -7.025 6.613 18.064 Atomic orbital electron populations 1.21743 0.95015 1.01346 1.02140 1.20508 0.95898 0.93062 1.02600 1.19794 1.00029 0.95944 0.93326 1.20883 1.01058 0.94855 0.97178 1.21077 0.99734 0.94755 0.97685 1.19313 0.97980 0.94265 0.93338 1.19812 0.94592 0.93439 0.97436 1.21898 1.02252 1.01488 0.94052 1.21866 0.98570 0.99223 0.99732 1.20034 0.86498 0.84726 0.79162 1.90685 1.66116 1.33214 1.51650 1.46468 1.19369 1.06593 1.63038 1.18744 0.75518 0.97544 0.91172 0.93445 1.21197 0.99657 1.00515 1.35835 0.92221 1.24884 0.95745 0.97141 0.95889 1.69891 1.04828 1.33937 1.43302 0.86540 0.77353 0.83636 0.79741 1.20190 1.21158 1.20211 1.21929 1.04131 0.93207 0.97297 1.21836 0.98975 0.99388 0.99178 1.20906 0.97336 0.94555 0.97728 1.20918 1.00641 0.94794 0.97279 0.92666 0.92604 0.92694 0.91239 0.91313 0.86614 0.85910 0.91629 0.91650 0.91854 0.91932 0.91882 0.91550 0.78140 0.92544 0.88405 0.95141 0.96011 0.94214 0.93238 0.86410 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.80 6.06 -27.88 -0.17 -0.97 16 3 C -0.09 -1.13 5.13 -104.63 -0.54 -1.67 16 4 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 5 C -0.11 -1.56 8.99 -39.58 -0.36 -1.91 16 6 C -0.05 -0.73 4.23 -104.62 -0.44 -1.18 16 7 C -0.05 -0.73 0.72 -156.81 -0.11 -0.84 16 8 C -0.14 -1.73 7.11 37.16 0.26 -1.47 16 9 C -0.14 -1.73 8.07 37.16 0.30 -1.43 16 10 C 0.51 10.00 4.91 -10.99 -0.05 9.95 16 11 O -0.54 -12.58 12.67 5.56 0.07 -12.51 16 12 N -0.71 -14.42 4.86 -54.93 -0.27 -14.68 16 13 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 14 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 15 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 18 N -0.88 -24.74 11.29 55.43 0.63 -24.12 16 19 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 24 C -0.14 -3.10 8.51 37.16 0.32 -2.79 16 25 C -0.09 -1.33 8.38 -39.58 -0.33 -1.67 16 26 C -0.12 -1.61 9.70 -39.59 -0.38 -1.99 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.12 1.46 5.91 -52.48 -0.31 1.15 16 34 H 0.06 0.78 7.96 -51.93 -0.41 0.36 16 35 H 0.06 0.66 7.77 -51.93 -0.40 0.26 16 36 H 0.06 0.83 7.25 -51.92 -0.38 0.46 16 37 H 0.06 0.83 7.08 -51.93 -0.37 0.46 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.79 7.27 -51.93 -0.38 0.42 16 40 H 0.39 6.92 7.45 -40.82 -0.30 6.62 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.04 0.88 5.63 -51.93 -0.29 0.58 16 46 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 47 H 0.12 1.83 7.23 -52.49 -0.38 1.46 16 48 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -30.16 374.95 -9.26 -39.42 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.10 Total: 8.61 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -2.22 Total: -17.90 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.36 Total: -38.80 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.16 -9.26 -39.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183859210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.223 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds