Wall clock time and date at job start Tue Mar 31 2020 08:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50709 * 109.47229 * 2 1 4 4 C 1.37979 * 120.06818 * 267.40651 * 3 2 1 5 5 C 1.38342 * 120.14311 * 179.69900 * 4 3 2 6 6 C 1.38387 * 120.28722 * 0.29924 * 5 4 3 7 7 C 1.37934 * 120.15043 * 359.97438 * 6 5 4 8 8 C 1.39556 * 120.07445 * 87.65354 * 3 2 1 9 9 C 1.47844 * 120.14518 * 0.04853 * 8 3 2 10 10 O 1.21547 * 120.00103 * 306.23055 * 9 8 3 11 11 N 1.34783 * 119.99828 * 126.23188 * 9 8 3 12 12 C 1.46507 * 119.99754 * 4.24461 * 11 9 8 13 13 C 1.50693 * 109.46958 * 94.86821 * 12 11 9 14 14 H 1.08002 * 120.00286 * 3.89070 * 13 12 11 15 15 C 1.37881 * 120.00059 * 183.89206 * 13 12 11 16 16 N 1.31520 * 119.99661 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00204 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47214 * 89.99916 * 17 15 13 19 19 H 1.48499 * 109.47216 * 209.99816 * 17 15 13 20 20 H 1.48498 * 109.47344 * 330.00197 * 17 15 13 21 21 C 1.46491 * 120.00131 * 184.24085 * 11 9 8 22 22 C 1.53009 * 109.46952 * 66.62595 * 21 11 9 23 23 C 1.53000 * 109.47629 * 186.62571 * 21 11 9 24 24 C 1.53000 * 109.47406 * 306.62819 * 21 11 9 25 25 C 1.52998 * 109.47090 * 302.27854 * 24 21 11 26 26 H 1.08998 * 109.46687 * 60.00247 * 1 2 3 27 27 H 1.08999 * 109.46739 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46993 * 300.00749 * 1 2 3 29 29 H 1.08996 * 109.47263 * 239.99963 * 2 1 3 30 30 H 1.09004 * 109.47300 * 119.99423 * 2 1 3 31 31 H 1.07998 * 119.93213 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.85718 * 180.27825 * 5 4 3 33 33 H 1.08000 * 119.92179 * 179.97438 * 6 5 4 34 34 H 1.08000 * 120.07495 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46600 * 214.86548 * 12 11 9 36 36 H 1.08999 * 109.47162 * 334.86456 * 12 11 9 37 37 H 0.96997 * 119.99604 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.47058 * 59.99932 * 22 21 11 39 39 H 1.09004 * 109.47067 * 180.02562 * 22 21 11 40 40 H 1.09000 * 109.47156 * 300.00037 * 22 21 11 41 41 H 1.08998 * 109.46894 * 59.38993 * 23 21 11 42 42 H 1.08993 * 109.47523 * 179.39891 * 23 21 11 43 43 H 1.09006 * 109.46905 * 299.39947 * 23 21 11 44 44 H 1.09003 * 109.46837 * 62.27333 * 24 21 11 45 45 H 1.08999 * 109.47096 * 182.27494 * 24 21 11 46 46 H 1.09006 * 109.46648 * 306.42117 * 25 24 21 47 47 H 1.08993 * 109.47206 * 66.41949 * 25 24 21 48 48 H 1.08992 * 109.47237 * 186.42570 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3138 2.0546 -1.1929 5 6 2.7691 3.3610 -1.1950 6 6 2.9513 4.0385 -0.0022 7 6 2.6791 3.4147 1.1975 8 6 2.2189 2.0967 1.2067 9 6 1.9256 1.4216 2.4888 10 8 0.8371 0.9129 2.6728 11 7 2.8652 1.3702 3.4538 12 6 4.1431 2.0626 3.2694 13 6 4.0723 3.4259 3.9075 14 1 3.1893 3.7207 4.4551 15 6 5.1349 4.2971 3.7924 16 7 6.2099 3.9383 3.1251 17 14 5.0469 5.9873 4.5827 18 1 5.5779 5.9144 5.9677 19 1 5.8583 6.9467 3.7914 20 1 3.6344 6.4445 4.6177 21 6 2.6087 0.6221 4.6869 22 6 2.5108 -0.8709 4.3666 23 6 3.7536 0.8579 5.6741 24 6 1.2938 1.0978 5.3078 25 6 1.3711 2.6021 5.5757 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.1741 1.5313 -2.1272 32 1 2.9836 3.8541 -2.1316 33 1 3.3074 5.0581 -0.0107 34 1 2.8213 3.9447 2.1277 35 1 4.9404 1.4840 3.7359 36 1 4.3477 2.1702 2.2042 37 1 6.9576 4.5510 3.0444 38 1 3.4476 -1.2098 3.9242 39 1 2.3195 -1.4275 5.2841 40 1 1.6952 -1.0389 3.6633 41 1 3.8303 1.9227 5.8939 42 1 3.5575 0.3098 6.5955 43 1 4.6888 0.5091 5.2359 44 1 0.4726 0.8928 4.6210 45 1 1.1232 0.5699 6.2461 46 1 2.2589 2.8202 6.1695 47 1 1.4272 3.1375 4.6280 48 1 0.4824 2.9202 6.1207 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189957230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:46 Heat of formation + Delta-G solvation = -22.096427 kcal Electronic energy + Delta-G solvation = -27270.668488 eV Core-core repulsion = 23904.161308 eV Total energy + Delta-G solvation = -3366.507180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15103 -38.32657 -36.12132 -33.86163 -33.40752 -32.11274 -30.39537 -29.63181 -28.91182 -27.77956 -26.14071 -23.85152 -23.14239 -22.97219 -22.30774 -21.01647 -19.71134 -17.84163 -16.75943 -16.23868 -15.49668 -15.31025 -15.12376 -14.56201 -14.37326 -14.15077 -13.69485 -13.36746 -13.23880 -12.98481 -12.75975 -12.61086 -12.45095 -12.16868 -11.93671 -11.78150 -11.67629 -11.43722 -11.35683 -11.22434 -11.10949 -11.01743 -10.95963 -10.58562 -10.48439 -10.46287 -10.29552 -10.18267 -10.08882 -9.90968 -9.48489 -8.66704 -8.55964 -8.17703 -8.16839 -7.58851 -6.17812 -4.23272 1.65087 1.96714 3.19614 3.28320 3.30333 3.51437 3.91111 4.29275 4.40492 5.12597 5.14505 5.21178 5.30308 5.44751 5.55650 5.58563 5.62803 5.70776 5.79796 5.88871 5.94856 5.94907 6.06397 6.12241 6.19397 6.23583 6.24374 6.28444 6.35760 6.42468 6.46647 6.51672 6.57829 6.65562 6.70031 6.76738 6.86715 6.92662 6.93945 6.99160 7.10689 7.11913 7.17432 7.33115 7.52866 7.70519 7.79023 8.09087 8.43055 8.83832 9.09672 9.42023 10.88067 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.007971 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.939444 B = 3511.990747 C = 5151.245850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.046 4.046 4 C -0.140 4.140 5 C -0.107 4.107 6 C -0.134 4.134 7 C -0.058 4.058 8 C -0.117 4.117 9 C 0.563 3.437 10 O -0.559 6.559 11 N -0.577 5.577 12 C 0.229 3.771 13 C -0.537 4.537 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.885 3.115 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.180 3.820 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.135 4.135 25 C -0.145 4.145 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.158 0.842 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -4.693 -3.087 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.047 4.047 4 C -0.158 4.158 5 C -0.126 4.126 6 C -0.152 4.152 7 C -0.076 4.076 8 C -0.120 4.120 9 C 0.351 3.649 10 O -0.440 6.440 11 N -0.307 5.307 12 C 0.109 3.891 13 C -0.576 4.576 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.521 5.521 17 Si 0.712 3.288 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.095 3.905 22 C -0.215 4.215 23 C -0.209 4.209 24 C -0.173 4.173 25 C -0.202 4.202 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.175 0.825 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.199 -4.902 -3.017 8.459 hybrid contribution 0.488 1.132 0.340 1.279 sum -5.711 -3.770 -2.677 7.348 Atomic orbital electron populations 1.21773 0.94392 1.01102 1.02872 1.20455 0.96789 0.92484 1.01848 1.19799 0.97039 0.95927 0.91956 1.20755 1.02901 0.95338 0.96816 1.21160 0.98884 0.94636 0.97885 1.21066 1.01500 1.00264 0.92367 1.22061 0.91651 0.93728 1.00199 1.19816 1.03544 0.95664 0.93006 1.18207 0.83963 0.79117 0.83575 1.90552 1.23514 1.49046 1.80930 1.48278 1.17864 1.49412 1.15173 1.19582 0.79443 0.91569 0.98463 1.21668 1.02455 0.99027 1.34417 0.90884 1.24920 0.95294 0.98244 0.95041 1.69935 1.05525 1.36405 1.40258 0.86698 0.78336 0.84203 0.79535 1.20557 1.21153 1.19668 1.20203 0.95344 0.90179 0.84774 1.22172 1.02017 0.95755 1.01559 1.22164 0.97274 1.04361 0.97081 1.21986 0.98731 0.96472 1.00100 1.21843 1.00247 0.96114 1.01987 0.93695 0.93419 0.90090 0.92031 0.91306 0.86600 0.86728 0.86297 0.82490 0.94763 0.93762 0.92631 0.93077 0.92628 0.91648 0.89479 0.93271 0.92254 0.89120 0.92975 0.92250 0.91987 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.70 37.16 0.36 -1.78 16 2 C -0.08 -1.24 5.37 -27.88 -0.15 -1.39 16 3 C -0.05 -0.82 5.17 -104.22 -0.54 -1.36 16 4 C -0.14 -2.21 9.68 -39.64 -0.38 -2.59 16 5 C -0.11 -1.69 10.04 -39.49 -0.40 -2.08 16 6 C -0.13 -2.38 10.03 -39.64 -0.40 -2.78 16 7 C -0.06 -1.18 7.70 -39.18 -0.30 -1.48 16 8 C -0.12 -2.34 4.71 -104.97 -0.49 -2.83 16 9 C 0.56 11.49 5.16 -12.33 -0.06 11.43 16 10 O -0.56 -11.61 10.34 5.32 0.06 -11.56 16 11 N -0.58 -11.65 1.74 -161.28 -0.28 -11.93 16 12 C 0.23 5.19 4.09 -5.19 -0.02 5.17 16 13 C -0.54 -12.69 5.43 -34.44 -0.19 -12.88 16 14 H 0.07 1.73 4.66 -52.49 -0.24 1.48 16 15 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.88 -23.20 13.29 55.43 0.74 -22.47 16 17 Si 0.88 19.60 29.54 -169.99 -5.02 14.58 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C 0.18 3.24 0.72 -131.82 -0.09 3.14 16 22 C -0.16 -2.56 8.50 37.16 0.32 -2.25 16 23 C -0.15 -2.66 7.08 37.16 0.26 -2.40 16 24 C -0.13 -2.36 4.60 -26.73 -0.12 -2.48 16 25 C -0.14 -2.61 8.37 37.16 0.31 -2.30 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.41 6.09 -51.93 -0.32 1.09 16 29 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.07 1.19 6.99 -51.93 -0.36 0.83 16 31 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.16 3.47 5.33 -52.49 -0.28 3.19 16 35 H 0.03 0.83 6.11 -51.93 -0.32 0.51 16 36 H 0.04 1.10 5.75 -51.93 -0.30 0.80 16 37 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.14 6.81 -51.93 -0.35 0.78 16 41 H 0.09 1.69 4.91 -51.93 -0.26 1.44 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 1.08 6.69 -51.93 -0.35 0.74 16 44 H 0.09 1.73 5.69 -51.93 -0.30 1.44 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.08 5.85 -51.93 -0.30 0.78 16 47 H 0.06 1.26 6.08 -51.93 -0.32 0.95 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -25.62 356.54 -8.61 -34.23 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.47 Total: 9.03 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.00 Total: -17.25 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.46 Total: -34.40 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.06 Total: -11.56 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -25.62 -8.61 -34.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189957230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.130 kcal (2) G-P(sol) polarization free energy of solvation -25.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds