Wall clock time and date at job start Tue Mar 31 2020 09:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47051 * 2 1 4 4 C 1.53005 * 109.46983 * 119.99532 * 2 1 3 5 5 C 1.53003 * 109.47086 * 174.99698 * 4 2 1 6 6 H 1.09002 * 110.62439 * 51.89839 * 5 4 2 7 7 C 1.55137 * 110.85762 * 288.69249 * 5 4 2 8 8 C 1.54907 * 101.64991 * 205.89322 * 7 5 4 9 9 N 1.47845 * 104.80019 * 37.06812 * 8 7 5 10 10 C 1.46894 * 111.00222 * 213.63723 * 9 8 7 11 11 C 1.50701 * 109.46917 * 69.87141 * 10 9 8 12 12 C 1.38307 * 119.93016 * 269.72809 * 11 10 9 13 13 C 1.38105 * 120.06632 * 179.72798 * 12 11 10 14 14 C 1.38882 * 119.92914 * 0.56776 * 13 12 11 15 15 O 1.35746 * 120.06508 * 179.68227 * 14 13 12 16 16 C 1.34828 * 117.00105 * 174.48547 * 15 14 13 17 17 H 1.08004 * 119.99662 * 5.05940 * 16 15 14 18 18 C 1.38654 * 120.00381 * 185.05796 * 16 15 14 19 19 N 1.31558 * 120.00004 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00068 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47173 * 89.99671 * 20 18 16 22 22 H 1.48497 * 109.47064 * 210.00302 * 20 18 16 23 23 H 1.48501 * 109.46587 * 330.00016 * 20 18 16 24 24 C 1.38873 * 119.86375 * 359.70865 * 14 13 12 25 25 C 1.38098 * 119.93150 * 359.97438 * 24 14 13 26 26 C 1.47446 * 108.56114 * 335.90589 * 9 8 7 27 27 H 1.09004 * 109.47185 * 300.00188 * 1 2 3 28 28 H 1.08993 * 109.47124 * 60.00157 * 1 2 3 29 29 H 1.09008 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47280 * 239.99517 * 2 1 3 31 31 H 1.08996 * 109.47473 * 59.99635 * 3 2 1 32 32 H 1.09007 * 109.46930 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46919 * 299.99582 * 3 2 1 34 34 H 1.09006 * 109.46959 * 55.00072 * 4 2 1 35 35 H 1.08994 * 109.47312 * 295.00191 * 4 2 1 36 36 H 1.08998 * 110.99720 * 87.79866 * 7 5 4 37 37 H 1.09009 * 110.99050 * 323.98111 * 7 5 4 38 38 H 1.08998 * 110.37059 * 278.23667 * 8 7 5 39 39 H 1.09004 * 110.37171 * 155.89810 * 8 7 5 40 40 H 1.08997 * 109.47447 * 189.87029 * 10 9 8 41 41 H 1.09001 * 109.47418 * 309.87539 * 10 9 8 42 42 H 1.07998 * 119.96538 * 359.97438 * 12 11 10 43 43 H 1.08003 * 120.02928 * 180.27090 * 13 12 11 44 44 H 0.96997 * 120.00027 * 179.97438 * 19 18 16 45 45 H 1.07995 * 120.03283 * 179.97438 * 24 14 13 46 46 H 1.08001 * 119.96740 * 180.02562 * 25 24 14 47 47 H 1.09007 * 109.88842 * 120.39987 * 26 9 8 48 48 H 1.09006 * 109.88344 * 241.41866 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8311 1.1881 6 1 4.0127 0.1444 0.9982 7 6 4.0019 -1.8550 0.1076 8 6 5.3824 -2.3072 0.6455 9 7 5.2200 -2.3495 2.1144 10 6 6.4678 -1.9751 2.7930 11 6 6.7307 -0.5057 2.5861 12 6 7.4729 -0.0839 1.4980 13 6 7.7107 1.2625 1.3027 14 6 7.2136 2.1922 2.2067 15 8 7.4512 3.5158 2.0208 16 6 6.8458 4.3713 2.8690 17 1 6.2720 3.9912 3.7013 18 6 6.9598 5.7392 2.6728 19 7 6.3695 6.5739 3.5007 20 14 7.9517 6.3967 1.2329 21 1 7.0658 6.5519 0.0513 22 1 8.5325 7.7152 1.5929 23 1 9.0455 5.4456 0.9100 24 6 6.4735 1.7651 3.3014 25 6 6.2336 0.4179 3.4877 26 6 4.1206 -1.4423 2.4914 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6053 -1.7198 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 4.1001 -1.3766 -0.8668 37 1 3.3072 -2.6938 0.0609 38 1 6.1518 -1.5863 0.3694 39 1 5.6332 -3.2966 0.2627 40 1 6.3776 -2.1814 3.8594 41 1 7.2940 -2.5536 2.3796 42 1 7.8636 -0.8078 0.7982 43 1 8.2867 1.5915 0.4504 44 1 6.4496 7.5308 3.3636 45 1 6.0861 2.4857 4.0063 46 1 5.6578 0.0851 4.3386 47 1 3.3369 -2.0017 3.0024 48 1 4.4976 -0.6535 3.1425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266713838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:49 Heat of formation + Delta-G solvation = -14.512266 kcal Electronic energy + Delta-G solvation = -25607.065531 eV Core-core repulsion = 22240.887225 eV Total energy + Delta-G solvation = -3366.178306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.02257 -38.78717 -37.02917 -35.81026 -32.65746 -32.18804 -30.61479 -29.55348 -28.77365 -27.15750 -26.25084 -25.38123 -23.88817 -22.26500 -21.22252 -20.70068 -19.98175 -19.46470 -17.93299 -17.30894 -16.29744 -15.61623 -15.05841 -14.94050 -14.46825 -14.32046 -14.09020 -13.83180 -13.70738 -13.63651 -13.28068 -13.09072 -12.81114 -12.59242 -12.35436 -12.23665 -12.18497 -11.93618 -11.56116 -11.39402 -11.26280 -11.18954 -11.01133 -10.99711 -10.82506 -10.76049 -10.68679 -10.39899 -10.32309 -10.22709 -10.11142 -9.43769 -8.91241 -8.29780 -8.13594 -7.36753 -6.46375 -4.13167 2.04179 2.12522 3.18085 3.21870 3.36215 4.19169 4.20189 4.46551 4.58412 4.75757 4.80184 4.84442 4.98551 5.05312 5.07904 5.21664 5.33166 5.39304 5.50243 5.55559 5.56596 5.62108 5.62444 5.69330 5.73932 5.81767 5.86155 5.89963 5.93993 5.95638 5.99014 6.05256 6.06059 6.16637 6.20795 6.23282 6.28091 6.33657 6.43913 6.49918 6.57608 6.71162 6.96189 7.03970 7.20155 7.24821 7.27952 7.54728 7.74392 7.98511 8.88779 9.50656 10.61150 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.004592 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.042107 B = 6095.726769 C = 7498.081097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.101 4.101 5 C -0.106 4.106 6 H 0.082 0.918 7 C -0.121 4.121 8 C 0.032 3.968 9 N -0.521 5.521 10 C 0.099 3.901 11 C -0.208 4.208 12 C -0.067 4.067 13 C -0.193 4.193 14 C 0.162 3.838 15 O -0.217 6.217 16 C -0.390 4.390 17 H 0.106 0.894 18 C 0.065 3.935 19 N -0.878 5.878 20 Si 0.904 3.096 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.220 4.220 25 C -0.062 4.062 26 C 0.033 3.967 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.280 0.720 45 H 0.132 0.868 46 H 0.110 0.890 47 H 0.067 0.933 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 -15.634 -5.714 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.139 4.139 5 C -0.126 4.126 6 H 0.100 0.900 7 C -0.159 4.159 8 C -0.095 4.095 9 N -0.243 5.243 10 C -0.028 4.028 11 C -0.210 4.210 12 C -0.086 4.086 13 C -0.213 4.213 14 C 0.110 3.890 15 O -0.122 6.122 16 C -0.465 4.465 17 H 0.123 0.877 18 C -0.139 4.139 19 N -0.516 5.516 20 Si 0.730 3.270 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.184 1.184 24 C -0.239 4.239 25 C -0.081 4.081 26 C -0.095 4.095 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.150 0.850 46 H 0.127 0.873 47 H 0.086 0.914 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.404 -15.797 -5.641 17.955 hybrid contribution 0.527 1.408 -0.643 1.635 sum -5.877 -14.389 -6.284 16.765 Atomic orbital electron populations 1.21845 0.95646 1.01277 1.01640 1.21101 0.95202 0.96613 0.98454 1.21902 1.01716 0.95595 1.01599 1.21599 0.94417 1.00102 0.97778 1.22402 0.95615 0.99433 0.95115 0.89988 1.22722 0.96560 0.98436 0.98195 1.23136 0.97551 1.00645 0.88177 1.63977 1.05038 1.49192 1.06136 1.21102 0.91786 0.90599 0.99339 1.19989 1.06054 0.96080 0.98921 1.20509 0.97364 0.94240 0.96460 1.20201 1.07926 0.91960 1.01180 1.19111 0.92719 0.84336 0.92878 1.83573 1.63017 1.12153 1.53423 1.20756 1.31085 0.86729 1.07976 0.87651 1.24459 0.96734 0.94540 0.98161 1.69642 1.41883 1.03479 1.36559 0.86198 0.80901 0.78292 0.81630 1.19875 1.20714 1.18387 1.21266 1.05794 0.96107 1.00771 1.20651 0.97451 0.92509 0.97491 1.23068 0.93666 0.95259 0.97472 0.92749 0.92958 0.93008 0.91439 0.92595 0.92112 0.93108 0.92095 0.91932 0.91437 0.91255 0.92354 0.91053 0.90756 0.90986 0.87134 0.86691 0.91009 0.85021 0.87252 0.91427 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 2 C -0.10 -1.01 2.87 -90.62 -0.26 -1.27 16 3 C -0.15 -1.85 8.97 37.15 0.33 -1.52 16 4 C -0.10 -1.11 4.04 -26.73 -0.11 -1.22 16 5 C -0.11 -1.32 2.79 -88.80 -0.25 -1.57 16 6 H 0.08 1.23 6.31 -51.93 -0.33 0.90 16 7 C -0.12 -1.37 5.86 -24.59 -0.14 -1.51 16 8 C 0.03 0.39 6.48 -2.30 -0.01 0.38 16 9 N -0.52 -6.76 5.41 -232.69 -1.26 -8.02 16 10 C 0.10 1.31 5.60 -4.98 -0.03 1.29 16 11 C -0.21 -3.28 4.32 -104.57 -0.45 -3.73 16 12 C -0.07 -1.09 8.17 -39.60 -0.32 -1.42 16 13 C -0.19 -3.73 9.99 -39.39 -0.39 -4.13 16 14 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 15 O -0.22 -5.64 8.59 0.07 0.00 -5.64 16 16 C -0.39 -10.84 9.95 30.89 0.31 -10.53 16 17 H 0.11 2.99 5.44 -52.48 -0.29 2.71 16 18 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 19 N -0.88 -25.10 13.96 55.48 0.77 -24.33 16 20 Si 0.90 21.49 28.62 -169.99 -4.86 16.63 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.26 -6.21 7.11 56.52 0.40 -5.80 16 24 C -0.22 -4.60 9.17 -39.40 -0.36 -4.97 16 25 C -0.06 -1.08 7.72 -39.61 -0.31 -1.38 16 26 C 0.03 0.43 5.94 -2.84 -0.02 0.41 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.07 0.70 7.52 -51.93 -0.39 0.31 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.83 6.43 -51.92 -0.33 0.50 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.62 8.01 -51.93 -0.42 0.21 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 37 H 0.07 0.74 7.96 -51.92 -0.41 0.32 16 38 H 0.06 0.76 4.93 -51.93 -0.26 0.50 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.07 0.88 8.02 -51.93 -0.42 0.47 16 42 H 0.11 1.53 7.21 -52.49 -0.38 1.15 16 43 H 0.12 2.10 8.06 -52.48 -0.42 1.67 16 44 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.13 2.93 5.64 -52.49 -0.30 2.63 16 46 H 0.11 1.68 7.29 -52.49 -0.38 1.30 16 47 H 0.07 0.84 7.82 -51.92 -0.41 0.44 16 48 H 0.07 1.07 3.98 -51.93 -0.21 0.87 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -27.94 367.19 -9.71 -37.65 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.87 Total: 5.29 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -2.03 Total: -27.11 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: -0.48 Total: -32.35 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: 0.00 Total: -5.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.86 Total: 16.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.94 -9.71 -37.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266713838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.134 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds