Wall clock time and date at job start Tue Mar 31 2020 09:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47051 * 2 1 4 4 C 1.53005 * 109.46983 * 119.99532 * 2 1 3 5 5 C 1.53003 * 109.47086 * 174.99698 * 4 2 1 6 6 H 1.09002 * 110.62439 * 51.89839 * 5 4 2 7 7 C 1.55137 * 110.85762 * 288.69249 * 5 4 2 8 8 C 1.54907 * 101.64991 * 205.89322 * 7 5 4 9 9 N 1.47845 * 104.80019 * 37.06812 * 8 7 5 10 10 C 1.46894 * 111.00222 * 213.63723 * 9 8 7 11 11 C 1.50701 * 109.46917 * 69.87141 * 10 9 8 12 12 C 1.38307 * 119.93016 * 269.72809 * 11 10 9 13 13 C 1.38105 * 120.06632 * 179.72798 * 12 11 10 14 14 C 1.38882 * 119.92914 * 0.56776 * 13 12 11 15 15 O 1.35746 * 120.06508 * 179.68227 * 14 13 12 16 16 C 1.34828 * 117.00105 * 174.48547 * 15 14 13 17 17 H 1.08004 * 119.99662 * 5.05940 * 16 15 14 18 18 C 1.38654 * 120.00381 * 185.05796 * 16 15 14 19 19 N 1.31558 * 120.00004 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00068 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47173 * 89.99671 * 20 18 16 22 22 H 1.48497 * 109.47064 * 210.00302 * 20 18 16 23 23 H 1.48501 * 109.46587 * 330.00016 * 20 18 16 24 24 C 1.38873 * 119.86375 * 359.70865 * 14 13 12 25 25 C 1.38098 * 119.93150 * 359.97438 * 24 14 13 26 26 C 1.47446 * 108.56114 * 335.90589 * 9 8 7 27 27 H 1.09004 * 109.47185 * 300.00188 * 1 2 3 28 28 H 1.08993 * 109.47124 * 60.00157 * 1 2 3 29 29 H 1.09008 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47280 * 239.99517 * 2 1 3 31 31 H 1.08996 * 109.47473 * 59.99635 * 3 2 1 32 32 H 1.09007 * 109.46930 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46919 * 299.99582 * 3 2 1 34 34 H 1.09006 * 109.46959 * 55.00072 * 4 2 1 35 35 H 1.08994 * 109.47312 * 295.00191 * 4 2 1 36 36 H 1.08998 * 110.99720 * 87.79866 * 7 5 4 37 37 H 1.09009 * 110.99050 * 323.98111 * 7 5 4 38 38 H 1.08998 * 110.37059 * 278.23667 * 8 7 5 39 39 H 1.09004 * 110.37171 * 155.89810 * 8 7 5 40 40 H 1.08997 * 109.47447 * 189.87029 * 10 9 8 41 41 H 1.09001 * 109.47418 * 309.87539 * 10 9 8 42 42 H 1.07998 * 119.96538 * 359.97438 * 12 11 10 43 43 H 1.08003 * 120.02928 * 180.27090 * 13 12 11 44 44 H 0.96997 * 120.00027 * 179.97438 * 19 18 16 45 45 H 1.07995 * 120.03283 * 179.97438 * 24 14 13 46 46 H 1.08001 * 119.96740 * 180.02562 * 25 24 14 47 47 H 1.09007 * 109.88842 * 120.39987 * 26 9 8 48 48 H 1.09006 * 109.88344 * 241.41866 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8311 1.1881 6 1 4.0127 0.1444 0.9982 7 6 4.0019 -1.8550 0.1076 8 6 5.3824 -2.3072 0.6455 9 7 5.2200 -2.3495 2.1144 10 6 6.4678 -1.9751 2.7930 11 6 6.7307 -0.5057 2.5861 12 6 7.4729 -0.0839 1.4980 13 6 7.7107 1.2625 1.3027 14 6 7.2136 2.1922 2.2067 15 8 7.4512 3.5158 2.0208 16 6 6.8458 4.3713 2.8690 17 1 6.2720 3.9912 3.7013 18 6 6.9598 5.7392 2.6728 19 7 6.3695 6.5739 3.5007 20 14 7.9517 6.3967 1.2329 21 1 7.0658 6.5519 0.0513 22 1 8.5325 7.7152 1.5929 23 1 9.0455 5.4456 0.9100 24 6 6.4735 1.7651 3.3014 25 6 6.2336 0.4179 3.4877 26 6 4.1206 -1.4423 2.4914 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6053 -1.7198 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 4.1001 -1.3766 -0.8668 37 1 3.3072 -2.6938 0.0609 38 1 6.1518 -1.5863 0.3694 39 1 5.6332 -3.2966 0.2627 40 1 6.3776 -2.1814 3.8594 41 1 7.2940 -2.5536 2.3796 42 1 7.8636 -0.8078 0.7982 43 1 8.2867 1.5915 0.4504 44 1 6.4496 7.5308 3.3636 45 1 6.0861 2.4857 4.0063 46 1 5.6578 0.0851 4.3386 47 1 3.3369 -2.0017 3.0024 48 1 4.4976 -0.6535 3.1425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266713838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:48 Heat of formation + Delta-G solvation = -29.313831 kcal Electronic energy + Delta-G solvation = -25607.707375 eV Core-core repulsion = 22240.887225 eV Total energy + Delta-G solvation = -3366.820150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35491 -40.24144 -38.40145 -36.95903 -34.52795 -33.49334 -32.08247 -30.79153 -29.96396 -28.06852 -27.65997 -26.92407 -25.10781 -23.78818 -22.44936 -21.88454 -21.14149 -20.40383 -19.83000 -19.09900 -17.36522 -16.84498 -16.62284 -16.20518 -15.81983 -15.70618 -15.59406 -15.29793 -15.03789 -14.75501 -14.50375 -14.35439 -14.16950 -14.08696 -13.77921 -13.62074 -13.12080 -13.03927 -12.89196 -12.67704 -12.56668 -12.46055 -12.38249 -12.18765 -12.10393 -11.96483 -11.88125 -11.73455 -11.35047 -11.30016 -11.27026 -11.08878 -10.92748 -9.80480 -9.26845 -8.97459 -8.52977 -6.25593 0.50594 0.58302 1.28227 1.31997 1.48422 2.24701 2.70945 3.00356 3.09890 3.28565 3.64076 3.80015 3.89604 3.98193 4.01345 4.09519 4.12560 4.17852 4.38466 4.42111 4.51243 4.55927 4.59772 4.66033 4.73429 4.76149 4.81779 4.85060 4.87264 4.96327 4.96559 5.00179 5.04349 5.09606 5.15011 5.18818 5.21304 5.24078 5.32465 5.34464 5.42873 5.52847 5.53900 5.55903 5.68357 5.75062 5.87167 6.11759 6.18449 6.19832 6.81373 7.55408 8.58656 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.004592 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.042107 B = 6095.726769 C = 7498.081097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.096 4.096 5 C -0.105 4.105 6 H 0.049 0.951 7 C -0.115 4.115 8 C 0.029 3.971 9 N -0.517 5.517 10 C 0.100 3.900 11 C -0.180 4.180 12 C -0.058 4.058 13 C -0.193 4.193 14 C 0.123 3.877 15 O -0.245 6.245 16 C -0.399 4.399 17 H 0.079 0.921 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.266 1.266 23 H -0.263 1.263 24 C -0.236 4.236 25 C -0.060 4.060 26 C 0.031 3.969 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.150 0.850 43 H 0.126 0.874 44 H 0.285 0.715 45 H 0.104 0.896 46 H 0.130 0.870 47 H 0.078 0.922 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -19.217 -7.501 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.134 4.134 5 C -0.124 4.124 6 H 0.068 0.932 7 C -0.153 4.153 8 C -0.098 4.098 9 N -0.239 5.239 10 C -0.027 4.027 11 C -0.182 4.182 12 C -0.076 4.076 13 C -0.212 4.212 14 C 0.074 3.926 15 O -0.153 6.153 16 C -0.475 4.475 17 H 0.097 0.903 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.191 1.191 23 H -0.188 1.188 24 C -0.255 4.255 25 C -0.079 4.079 26 C -0.097 4.097 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.168 0.832 43 H 0.144 0.856 44 H 0.094 0.906 45 H 0.122 0.878 46 H 0.148 0.852 47 H 0.096 0.904 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.355 -19.431 -7.426 21.750 hybrid contribution 0.433 2.159 -0.054 2.203 sum -5.922 -17.272 -7.480 19.732 Atomic orbital electron populations 1.21821 0.94382 1.02240 1.01716 1.21070 0.96197 0.95070 0.98552 1.21900 1.00324 0.97245 1.01346 1.21560 0.93477 1.00830 0.97534 1.22317 0.96399 0.98185 0.95546 0.93216 1.22710 0.96541 0.98307 0.97741 1.23248 0.97592 1.01547 0.87457 1.64049 1.04484 1.48523 1.06836 1.21247 0.92798 0.88200 1.00495 1.20458 1.02924 0.97679 0.97134 1.20947 0.96262 0.93536 0.96896 1.20506 1.07341 0.92669 1.00692 1.19637 0.94629 0.83754 0.94587 1.83514 1.64635 1.13412 1.53739 1.20673 1.31269 0.87639 1.07908 0.90318 1.25257 0.97962 0.94621 1.00846 1.69727 1.44045 1.03938 1.38576 0.85245 0.79284 0.77915 0.78452 1.19121 1.19080 1.18760 1.21237 1.06469 0.97411 1.00367 1.20883 0.97241 0.91113 0.98627 1.23087 0.94163 0.94957 0.97476 0.93198 0.92450 0.91564 0.90686 0.93807 0.94209 0.92420 0.90447 0.92979 0.91068 0.89815 0.93179 0.89062 0.89730 0.88713 0.83249 0.85644 0.90561 0.87760 0.85228 0.90375 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.19 71.98 0.66 -1.77 16 2 C -0.09 -1.80 2.87 -10.79 -0.03 -1.83 16 3 C -0.15 -3.76 8.97 71.98 0.65 -3.12 16 4 C -0.10 -1.96 4.04 30.60 0.12 -1.84 16 5 C -0.11 -2.45 2.79 -9.62 -0.03 -2.48 16 6 H 0.05 1.50 6.31 -2.39 -0.02 1.48 16 7 C -0.12 -2.23 5.86 31.98 0.19 -2.04 16 8 C 0.03 0.58 6.48 86.77 0.56 1.14 16 9 N -0.52 -11.42 5.41 -890.10 -4.82 -16.24 16 10 C 0.10 2.24 5.60 85.56 0.48 2.72 16 11 C -0.18 -5.20 4.32 -19.83 -0.09 -5.29 16 12 C -0.06 -1.73 8.17 22.25 0.18 -1.55 16 13 C -0.19 -7.31 9.99 22.39 0.22 -7.09 16 14 C 0.12 5.76 6.65 22.58 0.15 5.91 16 15 O -0.25 -13.43 8.59 -22.68 -0.19 -13.62 16 16 C -0.40 -23.66 9.95 67.92 0.68 -22.99 16 17 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 18 C 0.01 0.68 5.49 84.83 0.47 1.14 16 19 N -0.92 -55.36 13.96 21.61 0.30 -55.06 16 20 Si 0.97 45.70 28.62 68.60 1.96 47.67 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 24 C -0.24 -10.36 9.17 22.39 0.21 -10.16 16 25 C -0.06 -2.05 7.72 22.25 0.17 -1.88 16 26 C 0.03 0.74 5.94 86.64 0.51 1.25 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.07 1.40 7.52 -2.39 -0.02 1.38 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 1.14 6.43 -2.38 -0.02 1.12 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.35 8.01 -2.38 -0.02 1.33 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 37 H 0.08 1.42 7.96 -2.38 -0.02 1.40 16 38 H 0.05 1.09 4.93 -2.39 -0.01 1.08 16 39 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.08 1.80 8.08 -2.39 -0.02 1.78 16 41 H 0.09 1.79 8.02 -2.39 -0.02 1.77 16 42 H 0.15 3.39 7.21 -2.91 -0.02 3.37 16 43 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.10 5.12 5.64 -2.91 -0.02 5.10 16 46 H 0.13 3.88 7.29 -2.91 -0.02 3.86 16 47 H 0.08 1.73 7.82 -2.38 -0.02 1.71 16 48 H 0.06 1.55 3.98 -2.38 -0.01 1.54 16 Total: -1.00 -64.25 367.19 3.29 -60.96 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.93 Total: 26.16 kcal Atomic # 6 Polarization: -54.97 SS G_CDS: 5.10 Total: -49.86 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -4.52 Total: -71.30 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.19 Total: -13.62 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.96 Total: 47.67 kcal Total: -64.25 3.29 -60.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266713838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.650 kcal (2) G-P(sol) polarization free energy of solvation -64.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds