Wall clock time and date at job start Tue Mar 31 2020 09:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46809 * 2 1 4 4 C 1.52992 * 109.47292 * 120.00383 * 2 1 3 5 5 C 1.52999 * 109.47160 * 65.94493 * 4 2 1 6 6 H 1.09001 * 110.35230 * 306.73377 * 5 4 2 7 7 C 1.54592 * 110.30979 * 68.88445 * 5 4 2 8 8 C 1.54936 * 102.92564 * 140.87192 * 7 5 4 9 9 N 1.48531 * 103.22615 * 322.58463 * 8 7 5 10 10 C 1.46904 * 111.00214 * 159.71813 * 9 8 7 11 11 C 1.50697 * 109.46766 * 52.60053 * 10 9 8 12 12 C 1.38302 * 119.92861 * 90.00380 * 11 10 9 13 13 C 1.38099 * 120.07168 * 179.97438 * 12 11 10 14 14 C 1.38879 * 119.92825 * 0.02562 * 13 12 11 15 15 O 1.35756 * 120.06599 * 180.02562 * 14 13 12 16 16 C 1.34827 * 117.00164 * 5.54414 * 15 14 13 17 17 H 1.07995 * 120.00194 * 354.91808 * 16 15 14 18 18 C 1.38650 * 119.99732 * 174.92147 * 16 15 14 19 19 N 1.31555 * 119.99966 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00340 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46959 * 270.00050 * 20 18 16 22 22 H 1.48500 * 109.46828 * 30.00086 * 20 18 16 23 23 H 1.48502 * 109.47164 * 150.00215 * 20 18 16 24 24 C 1.38880 * 119.86286 * 0.27745 * 14 13 12 25 25 C 1.38104 * 119.92675 * 359.40521 * 24 14 13 26 26 C 1.47909 * 105.82080 * 39.20702 * 9 8 7 27 27 H 1.08998 * 109.46432 * 299.99803 * 1 2 3 28 28 H 1.08999 * 109.47291 * 59.99839 * 1 2 3 29 29 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46578 * 240.00636 * 2 1 3 31 31 H 1.08994 * 109.47098 * 64.94379 * 3 2 1 32 32 H 1.09001 * 109.46746 * 184.93993 * 3 2 1 33 33 H 1.08996 * 109.47188 * 304.93540 * 3 2 1 34 34 H 1.09005 * 109.47049 * 305.94262 * 4 2 1 35 35 H 1.08998 * 109.46903 * 185.94605 * 4 2 1 36 36 H 1.09007 * 110.71961 * 259.23049 * 7 5 4 37 37 H 1.08999 * 110.72822 * 22.33337 * 7 5 4 38 38 H 1.08996 * 110.66604 * 204.14934 * 8 7 5 39 39 H 1.09008 * 110.66511 * 81.01607 * 8 7 5 40 40 H 1.09002 * 109.46981 * 292.60581 * 10 9 8 41 41 H 1.08999 * 109.47229 * 172.60398 * 10 9 8 42 42 H 1.08008 * 119.96881 * 359.97438 * 12 11 10 43 43 H 1.08006 * 120.03710 * 180.02562 * 13 12 11 44 44 H 0.97003 * 120.00746 * 179.97438 * 19 18 16 45 45 H 1.07995 * 120.03453 * 179.72307 * 24 14 13 46 46 H 1.07999 * 119.96056 * 180.31689 * 25 24 14 47 47 H 1.09000 * 109.91702 * 94.02209 * 26 9 8 48 48 H 1.09003 * 109.91468 * 215.12150 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6558 -2.2004 1.1766 6 1 0.5850 -2.3058 1.0019 7 6 2.4543 -2.9081 0.0579 8 6 2.7844 -4.2855 0.6859 9 7 3.0515 -3.9548 2.1091 10 6 2.9133 -5.1438 2.9607 11 6 3.7624 -6.2592 2.4076 12 6 5.0743 -6.3986 2.8226 13 6 5.8549 -7.4200 2.3180 14 6 5.3213 -8.3074 1.3925 15 8 6.0860 -9.3128 0.8950 16 6 7.3167 -9.4652 1.4242 17 1 7.6848 -8.7539 2.1487 18 6 8.1096 -10.5351 1.0383 19 7 9.3106 -10.6835 1.5542 20 14 7.4726 -11.7658 -0.2144 21 1 6.7638 -12.8654 0.4882 22 1 6.5345 -11.0859 -1.1433 23 1 8.6134 -12.3243 -0.9839 24 6 4.0055 -8.1610 0.9729 25 6 3.2281 -7.1414 1.4862 26 6 2.0587 -2.9217 2.4762 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.7508 1.9301 0.9309 32 1 3.1264 1.4438 -0.0885 33 1 1.6063 1.9812 -0.8424 34 1 1.5925 -0.2726 2.1360 35 1 3.1249 -0.6300 1.3039 36 1 1.8420 -3.0284 -0.8360 37 1 3.3664 -2.3576 -0.1724 38 1 3.6689 -4.7190 0.2191 39 1 1.9331 -4.9609 0.6010 40 1 1.8695 -5.4573 2.9804 41 1 3.2404 -4.9058 3.9728 42 1 5.4888 -5.7080 3.5421 43 1 6.8792 -7.5286 2.6428 44 1 9.8653 -11.4322 1.2846 45 1 3.5892 -8.8467 0.2500 46 1 2.2033 -7.0302 1.1642 47 1 1.1842 -3.3907 2.9271 48 1 2.5019 -2.2129 3.1757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266713841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:52 Heat of formation + Delta-G solvation = -18.796265 kcal Electronic energy + Delta-G solvation = -24330.912936 eV Core-core repulsion = 20964.548863 eV Total energy + Delta-G solvation = -3366.364074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.74358 -38.94230 -37.11898 -36.02246 -32.74767 -32.22217 -30.30863 -29.50907 -29.31035 -27.46892 -26.18073 -25.22832 -24.01294 -22.25094 -21.37397 -20.64261 -20.16799 -19.63217 -17.88798 -17.25558 -16.22415 -15.80161 -15.20486 -14.93488 -14.65941 -14.30974 -14.06214 -13.92537 -13.76636 -13.64449 -13.50038 -13.33252 -12.69335 -12.59886 -12.47629 -12.39246 -12.18227 -12.10881 -11.94735 -11.63509 -11.41896 -11.30256 -11.13396 -11.07375 -10.83223 -10.72232 -10.64359 -10.56886 -10.48831 -10.35770 -10.13670 -9.37595 -8.86834 -8.31840 -8.24097 -7.30030 -6.41363 -4.07912 2.13675 2.19277 3.21827 3.25453 3.40094 4.10515 4.23654 4.35459 4.52405 4.55908 4.63293 4.77226 4.82757 4.85891 5.03611 5.10910 5.24870 5.29072 5.29337 5.33557 5.35312 5.42852 5.48136 5.55168 5.57627 5.63536 5.66964 5.70883 5.72596 5.81439 5.82379 5.88282 5.94152 6.01579 6.06515 6.13283 6.14634 6.19025 6.23648 6.35748 6.57449 6.79613 6.93099 7.07815 7.14331 7.27680 7.35026 7.61968 7.81042 8.04226 8.93881 9.56419 10.66275 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.028832 B = 0.002448 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.923171 B =11435.020098 C =11568.329891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.103 4.103 5 C -0.099 4.099 6 H 0.073 0.927 7 C -0.119 4.119 8 C 0.040 3.960 9 N -0.511 5.511 10 C 0.103 3.897 11 C -0.175 4.175 12 C -0.051 4.051 13 C -0.222 4.222 14 C 0.161 3.839 15 O -0.218 6.218 16 C -0.389 4.389 17 H 0.107 0.893 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.260 1.260 23 H -0.282 1.282 24 C -0.193 4.193 25 C -0.070 4.070 26 C 0.038 3.962 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.133 0.867 44 H 0.279 0.721 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.039 0.961 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 18.938 -1.169 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.140 4.140 5 C -0.118 4.118 6 H 0.092 0.908 7 C -0.157 4.157 8 C -0.087 4.087 9 N -0.235 5.235 10 C -0.024 4.024 11 C -0.176 4.176 12 C -0.070 4.070 13 C -0.241 4.241 14 C 0.109 3.891 15 O -0.123 6.123 16 C -0.464 4.464 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.184 1.184 23 H -0.208 1.208 24 C -0.213 4.213 25 C -0.089 4.089 26 C -0.090 4.090 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.133 0.867 46 H 0.126 0.874 47 H 0.058 0.942 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.269 18.817 -1.247 24.906 hybrid contribution -0.826 -0.925 -0.437 1.315 sum -17.094 17.893 -1.684 24.803 Atomic orbital electron populations 1.21889 0.95538 1.01699 1.01418 1.21138 0.95681 0.96032 0.98880 1.21842 1.01025 0.96108 1.01516 1.21699 1.01236 0.93781 0.97307 1.22077 0.99722 0.95032 0.94955 0.90820 1.22595 1.00055 0.96006 0.97081 1.23196 1.00523 0.95934 0.89063 1.64902 1.46803 1.09086 1.02674 1.20998 0.96622 0.88256 0.96531 1.19153 0.95531 0.99186 1.03715 1.20633 0.92735 0.95925 0.97718 1.21283 1.01757 0.98229 1.02845 1.19135 0.90223 0.88214 0.91543 1.83569 1.27073 1.45369 1.56283 1.20771 0.87875 1.12649 1.25153 0.87597 1.24469 0.94670 0.97135 0.97761 1.69645 1.08485 1.31138 1.42468 0.86183 0.78679 0.80744 0.81296 1.19910 1.18387 1.20784 1.20152 0.92409 1.02414 1.06293 1.20484 0.98059 0.94198 0.96120 1.22967 0.93894 0.95040 0.97146 0.92880 0.93043 0.92532 0.91064 0.92846 0.92683 0.92925 0.92151 0.91412 0.91557 0.90736 0.89676 0.93995 0.94871 0.90696 0.87164 0.84978 0.91058 0.86668 0.87449 0.94244 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.98 37.16 0.33 -0.64 16 2 C -0.10 -0.71 2.85 -90.62 -0.26 -0.97 16 3 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 4 C -0.10 -0.81 3.83 -26.74 -0.10 -0.92 16 5 C -0.10 -0.88 2.88 -89.26 -0.26 -1.14 16 6 H 0.07 0.62 6.38 -51.93 -0.33 0.29 16 7 C -0.12 -1.20 5.76 -24.87 -0.14 -1.34 16 8 C 0.04 0.51 4.97 -1.90 -0.01 0.50 16 9 N -0.51 -6.59 5.39 -231.88 -1.25 -7.84 16 10 C 0.10 1.40 5.18 -4.97 -0.03 1.37 16 11 C -0.17 -2.89 4.60 -104.58 -0.48 -3.37 16 12 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 13 C -0.22 -4.82 9.17 -39.39 -0.36 -5.18 16 14 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 15 O -0.22 -5.78 8.59 0.04 0.00 -5.78 16 16 C -0.39 -11.00 9.95 30.88 0.31 -10.70 16 17 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.49 13.96 55.48 0.77 -24.71 16 20 Si 0.91 21.74 28.62 -169.99 -4.86 16.88 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.19 -3.82 9.99 -39.39 -0.39 -4.21 16 25 C -0.07 -1.17 8.33 -39.61 -0.33 -1.50 16 26 C 0.04 0.39 6.35 -2.75 -0.02 0.37 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.38 6.48 -51.93 -0.34 0.04 16 30 H 0.07 0.55 7.40 -51.93 -0.38 0.16 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.60 8.01 -51.93 -0.42 0.19 16 36 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 37 H 0.07 0.78 7.77 -51.93 -0.40 0.38 16 38 H 0.08 1.25 7.73 -51.93 -0.40 0.84 16 39 H 0.04 0.51 7.09 -51.92 -0.37 0.15 16 40 H 0.03 0.42 7.75 -51.93 -0.40 0.02 16 41 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 42 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.13 3.03 5.64 -52.48 -0.30 2.73 16 44 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.12 2.13 8.06 -52.49 -0.42 1.70 16 46 H 0.11 1.53 7.38 -52.49 -0.39 1.14 16 47 H 0.04 0.39 7.57 -51.93 -0.39 0.00 16 48 H 0.08 0.77 7.69 -51.93 -0.40 0.37 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -28.74 373.58 -10.01 -38.75 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.16 Total: 1.63 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -2.14 Total: -24.55 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: -0.48 Total: -32.55 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: 0.00 Total: -5.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.74 -10.01 -38.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266713841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.953 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds