Wall clock time and date at job start Tue Mar 31 2020 08:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47119 * 2 1 4 4 C 1.53004 * 109.46936 * 240.00449 * 2 1 3 5 5 C 1.50693 * 109.47040 * 294.99773 * 4 2 1 6 6 C 1.38234 * 120.00361 * 269.73119 * 5 4 2 7 7 C 1.38239 * 120.00343 * 179.76578 * 6 5 4 8 8 C 1.38238 * 119.99593 * 0.48664 * 7 6 5 9 9 C 1.50701 * 119.99391 * 179.76911 * 8 7 6 10 10 C 1.52995 * 109.46849 * 270.01535 * 9 8 7 11 11 C 1.53004 * 109.47243 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47451 * 180.02562 * 11 10 9 13 13 O 1.21290 * 119.99785 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99811 * 180.02562 * 12 11 10 15 15 C 1.46491 * 120.00192 * 359.97438 * 14 12 11 16 16 C 1.37094 * 119.99388 * 180.02562 * 14 12 11 17 17 H 1.07997 * 120.00866 * 24.39464 * 16 14 12 18 18 C 1.38953 * 119.99475 * 204.39309 * 16 14 12 19 19 N 1.31407 * 120.00224 * 12.64248 * 18 16 14 20 20 Si 1.86808 * 120.00013 * 192.64030 * 18 16 14 21 21 H 1.48498 * 109.46850 * 60.00061 * 20 18 16 22 22 H 1.48497 * 109.47246 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46817 * 299.99844 * 20 18 16 24 24 C 1.38224 * 119.99974 * 359.78653 * 8 7 6 25 25 C 1.38234 * 119.99929 * 90.00118 * 5 4 2 26 26 H 1.08998 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47370 * 299.99962 * 1 2 3 28 28 H 1.09011 * 109.47180 * 59.99519 * 1 2 3 29 29 H 1.08995 * 109.46850 * 120.00432 * 2 1 3 30 30 H 1.09005 * 109.46854 * 60.00047 * 3 2 1 31 31 H 1.08999 * 109.46842 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47298 * 300.00389 * 3 2 1 33 33 H 1.08998 * 109.47183 * 54.99920 * 4 2 1 34 34 H 1.09001 * 109.46480 * 175.00043 * 4 2 1 35 35 H 1.08003 * 119.99692 * 359.97438 * 6 5 4 36 36 H 1.07995 * 119.99890 * 180.25085 * 7 6 5 37 37 H 1.08990 * 109.47557 * 30.02149 * 9 8 7 38 38 H 1.09002 * 109.46611 * 150.02405 * 9 8 7 39 39 H 1.09000 * 109.47679 * 300.00143 * 10 9 8 40 40 H 1.09002 * 109.47274 * 60.00742 * 10 9 8 41 41 H 1.09006 * 109.46903 * 300.00196 * 11 10 9 42 42 H 1.09002 * 109.46780 * 59.99948 * 11 10 9 43 43 H 1.09000 * 109.47280 * 85.86213 * 15 14 12 44 44 H 1.09001 * 109.47265 * 205.86210 * 15 14 12 45 45 H 1.09002 * 109.47685 * 325.86690 * 15 14 12 46 46 H 0.97001 * 120.00565 * 180.02562 * 19 18 16 47 47 H 1.08006 * 119.99938 * 179.97438 * 24 8 7 48 48 H 1.08005 * 120.00394 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 -2.1732 -1.1890 6 6 2.4839 -3.0974 -0.6002 7 6 2.1160 -4.4286 -0.5406 8 6 0.9100 -4.8372 -1.0788 9 6 0.5114 -6.2892 -1.0184 10 6 1.0213 -7.0104 -2.2676 11 6 0.6161 -8.4846 -2.2067 12 6 1.1190 -9.1951 -3.4369 13 8 1.7407 -8.5828 -4.2793 14 7 0.8777 -10.5109 -3.6010 15 6 0.1273 -11.2505 -2.5833 16 6 1.3357 -11.1573 -4.7199 17 1 2.1861 -10.7670 -5.2592 18 6 0.7056 -12.3149 -5.1601 19 7 -0.4638 -12.6548 -4.6665 20 14 1.5209 -13.3879 -6.4538 21 1 2.8328 -13.8642 -5.9467 22 1 0.6508 -14.5543 -6.7495 23 1 1.7269 -12.5976 -7.6942 24 6 0.0700 -3.9139 -1.6726 25 6 0.4355 -2.5818 -1.7275 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5140 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6053 -0.2616 -2.1370 34 1 3.1263 -0.6442 -1.2952 35 1 3.4281 -2.7789 -0.1838 36 1 2.7725 -5.1500 -0.0770 37 1 0.9459 -6.7487 -0.1307 38 1 -0.5750 -6.3661 -0.9726 39 1 0.5867 -6.5510 -3.1554 40 1 2.1077 -6.9336 -2.3136 41 1 1.0505 -8.9444 -1.3189 42 1 -0.4703 -8.5611 -2.1610 43 1 -0.9410 -11.1510 -2.7757 44 1 0.4065 -12.3035 -2.6197 45 1 0.3578 -10.8474 -1.5971 46 1 -0.9036 -13.4631 -4.9736 47 1 -0.8720 -4.2331 -2.0934 48 1 -0.2207 -1.8605 -2.1918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270044375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:57 Heat of formation + Delta-G solvation = -43.953696 kcal Electronic energy + Delta-G solvation = -23714.453962 eV Core-core repulsion = 20346.998980 eV Total energy + Delta-G solvation = -3367.454982 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.73178 -38.43565 -36.75396 -34.86735 -34.10349 -31.71084 -31.13843 -30.91954 -28.16972 -27.43520 -26.27875 -25.33314 -24.01429 -22.71127 -21.87928 -20.63618 -20.10462 -18.62017 -16.81270 -16.36036 -15.92231 -15.69448 -15.25588 -15.02814 -14.63821 -14.54735 -14.43578 -14.02561 -13.65533 -13.47443 -13.27622 -12.94539 -12.71712 -12.50004 -12.32255 -12.14542 -11.93797 -11.85526 -11.53108 -11.30822 -11.23725 -11.18875 -11.04336 -10.99696 -10.89464 -10.84311 -10.79274 -10.56012 -10.36603 -10.28844 -10.12598 -8.95682 -8.87361 -8.44284 -8.28439 -7.59746 -6.27474 -3.83434 1.36119 1.43663 3.21838 3.26645 3.30966 3.74438 3.98488 4.18688 4.51928 4.57226 4.68841 4.82085 4.85204 5.01226 5.04375 5.09948 5.15863 5.19156 5.32992 5.38093 5.41768 5.51735 5.54491 5.57814 5.61494 5.63210 5.67509 5.73947 5.81665 5.88618 6.00554 6.01447 6.04774 6.10245 6.12043 6.15046 6.22841 6.43875 6.50184 6.55725 6.61060 6.77479 6.79134 6.89982 7.05383 7.23250 7.60985 8.20806 8.55336 9.25255 9.49551 10.06901 10.77720 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.039888 B = 0.002073 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.804193 B =13501.990399 C =13726.026720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.091 4.091 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.074 4.074 9 C -0.084 4.084 10 C -0.091 4.091 11 C -0.130 4.130 12 C 0.447 3.553 13 O -0.591 6.591 14 N -0.451 5.451 15 C 0.113 3.887 16 C -0.306 4.306 17 H 0.096 0.904 18 C 0.029 3.971 19 N -0.885 5.885 20 Si 0.926 3.074 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.116 4.116 25 C -0.114 4.114 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.025 0.975 46 H 0.267 0.733 47 H 0.121 0.879 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 20.640 12.640 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.091 4.091 6 C -0.135 4.135 7 C -0.133 4.133 8 C -0.074 4.074 9 C -0.121 4.121 10 C -0.129 4.129 11 C -0.170 4.170 12 C 0.235 3.765 13 O -0.476 6.476 14 N -0.170 5.170 15 C -0.031 4.031 16 C -0.434 4.434 17 H 0.114 0.886 18 C -0.174 4.174 19 N -0.524 5.524 20 Si 0.752 3.248 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.134 4.134 25 C -0.132 4.132 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.044 0.956 46 H 0.077 0.923 47 H 0.139 0.861 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.683 20.746 12.194 24.074 hybrid contribution 0.133 -0.807 -0.591 1.009 sum 0.816 19.940 11.603 23.084 Atomic orbital electron populations 1.21921 0.95164 1.02322 1.01374 1.21084 0.96168 0.95690 0.98034 1.21858 1.00909 0.95988 1.01740 1.20657 1.00971 0.91374 0.98216 1.19773 0.94909 0.95264 0.99142 1.20967 0.99321 0.93073 1.00122 1.21047 0.96280 0.95767 1.00211 1.19957 0.94464 0.95778 0.97243 1.20711 1.01280 0.90772 0.99325 1.21233 1.01682 0.93531 0.96446 1.21552 1.01634 0.95773 0.98032 1.20171 0.85363 0.82217 0.88754 1.90505 1.45246 1.65666 1.46209 1.43598 1.48358 1.06230 1.18817 1.21446 0.96370 0.97740 0.87507 1.19589 1.12767 1.06517 1.04500 0.88647 1.25337 0.94982 0.98754 0.98315 1.69982 1.13147 1.25383 1.43927 0.86012 0.78844 0.79062 0.80844 1.19975 1.20992 1.19832 1.21065 0.99895 0.92912 0.99486 1.20980 0.96309 0.95762 1.00163 0.91971 0.93020 0.92828 0.91174 0.92731 0.92726 0.92682 0.91161 0.91191 0.86503 0.86166 0.91167 0.91108 0.91438 0.91512 0.90712 0.90469 0.93141 0.90878 0.95613 0.92300 0.86125 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.76 37.16 0.33 -0.79 16 2 C -0.09 -0.67 2.91 -90.62 -0.26 -0.93 16 3 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 4 C -0.07 -0.62 4.84 -27.88 -0.14 -0.75 16 5 C -0.09 -0.95 4.71 -104.63 -0.49 -1.44 16 6 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 7 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 8 C -0.07 -0.95 5.13 -104.63 -0.54 -1.48 16 9 C -0.08 -1.07 5.34 -27.88 -0.15 -1.22 16 10 C -0.09 -1.51 4.49 -26.73 -0.12 -1.63 16 11 C -0.13 -2.37 4.31 -27.88 -0.12 -2.49 16 12 C 0.45 11.13 7.63 -10.99 -0.08 11.05 16 13 O -0.59 -16.85 15.70 5.55 0.09 -16.76 16 14 N -0.45 -11.86 3.01 -122.20 -0.37 -12.23 16 15 C 0.11 2.56 8.44 59.84 0.51 3.07 16 16 C -0.31 -8.75 9.24 -14.93 -0.14 -8.89 16 17 H 0.10 2.86 7.45 -52.49 -0.39 2.47 16 18 C 0.03 0.78 5.04 -17.47 -0.09 0.69 16 19 N -0.88 -24.08 10.84 55.50 0.60 -23.48 16 20 Si 0.93 21.18 29.57 -169.99 -5.03 16.15 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.12 -1.40 9.70 -39.59 -0.38 -1.78 16 25 C -0.11 -1.25 7.96 -39.58 -0.32 -1.56 16 26 H 0.06 0.52 6.26 -51.93 -0.33 0.20 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 39 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.07 1.21 7.41 -51.93 -0.38 0.83 16 42 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 43 H 0.05 1.16 7.83 -51.93 -0.41 0.76 16 44 H 0.07 1.75 6.80 -51.93 -0.35 1.39 16 45 H 0.03 0.47 6.61 -51.93 -0.34 0.13 16 46 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 48 H 0.12 1.08 8.04 -52.48 -0.42 0.66 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -31.81 385.93 -9.82 -41.63 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.51 Total: 1.03 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.42 Total: -12.16 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.23 Total: -35.71 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.09 Total: -16.76 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.81 -9.82 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270044375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.321 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds