Wall clock time and date at job start Tue Mar 31 2020 08:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47119 * 2 1 4 4 C 1.53004 * 109.46936 * 240.00449 * 2 1 3 5 5 C 1.50693 * 109.47040 * 294.99773 * 4 2 1 6 6 C 1.38234 * 120.00361 * 269.73119 * 5 4 2 7 7 C 1.38239 * 120.00343 * 179.76578 * 6 5 4 8 8 C 1.38238 * 119.99593 * 0.48664 * 7 6 5 9 9 C 1.50701 * 119.99391 * 179.76911 * 8 7 6 10 10 C 1.52995 * 109.46849 * 270.01535 * 9 8 7 11 11 C 1.53004 * 109.47243 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47451 * 180.02562 * 11 10 9 13 13 O 1.21290 * 119.99785 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99811 * 180.02562 * 12 11 10 15 15 C 1.46491 * 120.00192 * 359.97438 * 14 12 11 16 16 C 1.37094 * 119.99388 * 180.02562 * 14 12 11 17 17 H 1.07997 * 120.00866 * 24.39464 * 16 14 12 18 18 C 1.38953 * 119.99475 * 204.39309 * 16 14 12 19 19 N 1.31407 * 120.00224 * 12.64248 * 18 16 14 20 20 Si 1.86808 * 120.00013 * 192.64030 * 18 16 14 21 21 H 1.48498 * 109.46850 * 60.00061 * 20 18 16 22 22 H 1.48497 * 109.47246 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46817 * 299.99844 * 20 18 16 24 24 C 1.38224 * 119.99974 * 359.78653 * 8 7 6 25 25 C 1.38234 * 119.99929 * 90.00118 * 5 4 2 26 26 H 1.08998 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47370 * 299.99962 * 1 2 3 28 28 H 1.09011 * 109.47180 * 59.99519 * 1 2 3 29 29 H 1.08995 * 109.46850 * 120.00432 * 2 1 3 30 30 H 1.09005 * 109.46854 * 60.00047 * 3 2 1 31 31 H 1.08999 * 109.46842 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47298 * 300.00389 * 3 2 1 33 33 H 1.08998 * 109.47183 * 54.99920 * 4 2 1 34 34 H 1.09001 * 109.46480 * 175.00043 * 4 2 1 35 35 H 1.08003 * 119.99692 * 359.97438 * 6 5 4 36 36 H 1.07995 * 119.99890 * 180.25085 * 7 6 5 37 37 H 1.08990 * 109.47557 * 30.02149 * 9 8 7 38 38 H 1.09002 * 109.46611 * 150.02405 * 9 8 7 39 39 H 1.09000 * 109.47679 * 300.00143 * 10 9 8 40 40 H 1.09002 * 109.47274 * 60.00742 * 10 9 8 41 41 H 1.09006 * 109.46903 * 300.00196 * 11 10 9 42 42 H 1.09002 * 109.46780 * 59.99948 * 11 10 9 43 43 H 1.09000 * 109.47280 * 85.86213 * 15 14 12 44 44 H 1.09001 * 109.47265 * 205.86210 * 15 14 12 45 45 H 1.09002 * 109.47685 * 325.86690 * 15 14 12 46 46 H 0.97001 * 120.00565 * 180.02562 * 19 18 16 47 47 H 1.08006 * 119.99938 * 179.97438 * 24 8 7 48 48 H 1.08005 * 120.00394 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 -2.1732 -1.1890 6 6 2.4839 -3.0974 -0.6002 7 6 2.1160 -4.4286 -0.5406 8 6 0.9100 -4.8372 -1.0788 9 6 0.5114 -6.2892 -1.0184 10 6 1.0213 -7.0104 -2.2676 11 6 0.6161 -8.4846 -2.2067 12 6 1.1190 -9.1951 -3.4369 13 8 1.7407 -8.5828 -4.2793 14 7 0.8777 -10.5109 -3.6010 15 6 0.1273 -11.2505 -2.5833 16 6 1.3357 -11.1573 -4.7199 17 1 2.1861 -10.7670 -5.2592 18 6 0.7056 -12.3149 -5.1601 19 7 -0.4638 -12.6548 -4.6665 20 14 1.5209 -13.3879 -6.4538 21 1 2.8328 -13.8642 -5.9467 22 1 0.6508 -14.5543 -6.7495 23 1 1.7269 -12.5976 -7.6942 24 6 0.0700 -3.9139 -1.6726 25 6 0.4355 -2.5818 -1.7275 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5140 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6053 -0.2616 -2.1370 34 1 3.1263 -0.6442 -1.2952 35 1 3.4281 -2.7789 -0.1838 36 1 2.7725 -5.1500 -0.0770 37 1 0.9459 -6.7487 -0.1307 38 1 -0.5750 -6.3661 -0.9726 39 1 0.5867 -6.5510 -3.1554 40 1 2.1077 -6.9336 -2.3136 41 1 1.0505 -8.9444 -1.3189 42 1 -0.4703 -8.5611 -2.1610 43 1 -0.9410 -11.1510 -2.7757 44 1 0.4065 -12.3035 -2.6197 45 1 0.3578 -10.8474 -1.5971 46 1 -0.9036 -13.4631 -4.9736 47 1 -0.8720 -4.2331 -2.0934 48 1 -0.2207 -1.8605 -2.1918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270044375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:56 Heat of formation + Delta-G solvation = -58.848974 kcal Electronic energy + Delta-G solvation = -23715.099870 eV Core-core repulsion = 20346.998980 eV Total energy + Delta-G solvation = -3368.100890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.64438 -40.27748 -37.52204 -36.71754 -35.38770 -33.66379 -32.30161 -31.77524 -29.32961 -28.07348 -27.95593 -26.72582 -25.56850 -23.56917 -23.12550 -21.53900 -20.77587 -20.44922 -18.87192 -17.81556 -17.13490 -16.86268 -16.56450 -16.20767 -16.09117 -15.78410 -15.48273 -15.17708 -14.90313 -14.51170 -14.22614 -14.20745 -13.90513 -13.69320 -13.34814 -13.22903 -13.13588 -13.02667 -12.99318 -12.72216 -12.64403 -12.56784 -12.38182 -12.24806 -12.14866 -11.97380 -11.85873 -11.65578 -11.50724 -11.46900 -11.41045 -10.99911 -10.32223 -9.74332 -9.65426 -9.30211 -8.34110 -5.99175 0.48321 0.56525 1.38354 1.39385 1.50317 2.06261 2.28253 2.85702 3.08741 3.15220 3.81148 3.90307 3.96637 4.03714 4.06000 4.11424 4.21453 4.22112 4.39807 4.42482 4.50034 4.59098 4.65855 4.71715 4.75412 4.79858 4.84817 4.88333 4.89554 4.94120 4.99687 5.04240 5.08317 5.09818 5.19244 5.22017 5.31529 5.36649 5.38344 5.43879 5.45501 5.47128 5.49734 5.60022 5.79158 5.82628 6.11666 6.20241 6.50449 7.18105 7.49767 8.06773 8.68883 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.039888 B = 0.002073 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.804193 B =13501.990399 C =13726.026720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.091 4.091 6 C -0.126 4.126 7 C -0.127 4.127 8 C -0.095 4.095 9 C -0.071 4.071 10 C -0.081 4.081 11 C -0.117 4.117 12 C 0.432 3.568 13 O -0.639 6.639 14 N -0.468 5.468 15 C 0.121 3.879 16 C -0.347 4.347 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.897 5.897 20 Si 0.989 3.011 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.278 1.278 24 C -0.130 4.130 25 C -0.121 4.121 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.273 0.727 47 H 0.125 0.875 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 21.183 13.941 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.110 4.110 5 C -0.091 4.091 6 C -0.144 4.144 7 C -0.145 4.145 8 C -0.095 4.095 9 C -0.108 4.108 10 C -0.119 4.119 11 C -0.156 4.156 12 C 0.223 3.777 13 O -0.527 6.527 14 N -0.187 5.187 15 C -0.022 4.022 16 C -0.475 4.475 17 H 0.085 0.915 18 C -0.206 4.206 19 N -0.536 5.536 20 Si 0.812 3.188 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.204 1.204 24 C -0.148 4.148 25 C -0.139 4.139 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.143 0.857 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.382 21.278 13.530 25.218 hybrid contribution 0.211 -0.919 -1.008 1.380 sum 0.593 20.359 12.521 23.909 Atomic orbital electron populations 1.21911 0.95234 1.01639 1.01920 1.21052 0.96076 0.96322 0.97240 1.21833 1.01181 0.95058 1.02167 1.20692 1.01449 0.89994 0.98883 1.20073 0.94521 0.96429 0.98125 1.21240 1.00142 0.92869 1.00107 1.21262 0.96277 0.96572 1.00397 1.20040 0.95179 0.95834 0.98439 1.20587 1.02026 0.90542 0.97654 1.21113 1.00366 0.92841 0.97611 1.21540 1.02664 0.95921 0.95501 1.21351 0.84190 0.81930 0.90257 1.90464 1.47174 1.66626 1.48459 1.43912 1.48628 1.07132 1.19022 1.21433 0.95343 0.96696 0.88687 1.19553 1.13334 1.08240 1.06364 0.91499 1.26098 0.95368 0.99087 1.00022 1.70049 1.13507 1.25660 1.44359 0.85075 0.78411 0.77444 0.77862 1.19152 1.19275 1.20395 1.21265 1.00276 0.93542 0.99697 1.21203 0.96823 0.95684 1.00139 0.93216 0.92464 0.92336 0.91739 0.92229 0.92310 0.92349 0.90703 0.90540 0.84824 0.85361 0.89413 0.89793 0.93916 0.93427 0.87685 0.88465 0.93900 0.92630 0.91087 0.91693 0.85664 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.76 71.98 0.63 -1.37 16 2 C -0.09 -1.16 2.91 -10.79 -0.03 -1.19 16 3 C -0.15 -1.50 9.19 71.98 0.66 -0.84 16 4 C -0.07 -1.08 4.84 29.85 0.14 -0.94 16 5 C -0.09 -1.81 4.71 -19.87 -0.09 -1.91 16 6 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 7 C -0.13 -2.95 9.70 22.27 0.22 -2.73 16 8 C -0.09 -2.34 5.13 -19.87 -0.10 -2.45 16 9 C -0.07 -1.70 5.34 29.85 0.16 -1.54 16 10 C -0.08 -2.67 4.49 30.59 0.14 -2.53 16 11 C -0.12 -4.10 4.31 29.85 0.13 -3.97 16 12 C 0.43 21.83 7.63 87.66 0.67 22.50 16 13 O -0.64 -37.86 15.70 -3.06 -0.05 -37.91 16 14 N -0.47 -24.89 3.01 -658.91 -1.98 -26.88 16 15 C 0.12 5.37 8.44 127.77 1.08 6.45 16 16 C -0.35 -20.39 9.24 84.04 0.78 -19.62 16 17 H 0.07 4.21 7.45 -2.91 -0.02 4.19 16 18 C 0.00 -0.23 5.04 84.93 0.43 0.20 16 19 N -0.90 -48.53 10.84 21.66 0.23 -48.29 16 20 Si 0.99 43.46 29.57 68.60 2.03 45.49 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 C -0.13 -3.07 9.70 22.27 0.22 -2.86 16 25 C -0.12 -2.54 7.96 22.27 0.18 -2.36 16 26 H 0.05 0.79 6.26 -2.39 -0.01 0.77 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 34 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 35 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 37 H 0.09 1.80 8.08 -2.39 -0.02 1.78 16 38 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 39 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 40 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 41 H 0.10 3.08 7.41 -2.38 -0.02 3.07 16 42 H 0.10 3.07 8.11 -2.39 -0.02 3.05 16 43 H 0.04 1.94 7.83 -2.39 -0.02 1.92 16 44 H 0.05 2.62 6.80 -2.39 -0.02 2.61 16 45 H 0.07 2.45 6.61 -2.39 -0.02 2.43 16 46 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 47 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 48 H 0.13 2.29 8.04 -2.91 -0.02 2.26 16 Total: -1.00 -70.66 385.93 6.54 -64.12 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.90 Total: 21.01 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 5.41 Total: -17.55 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -1.75 Total: -75.17 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.05 Total: -37.91 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -70.66 6.54 -64.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270044375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.268 kcal (2) G-P(sol) polarization free energy of solvation -70.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds