Wall clock time and date at job start Tue Mar 31 2020 08:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47169 * 2 1 4 4 C 1.53008 * 109.47299 * 65.00307 * 3 2 1 5 5 C 1.52999 * 109.47118 * 183.91964 * 4 3 2 6 6 C 1.53006 * 109.46857 * 184.99654 * 3 2 1 7 7 N 1.46496 * 109.46932 * 61.26536 * 6 3 2 8 8 C 1.46503 * 120.00176 * 264.04884 * 7 6 3 9 9 C 1.53002 * 109.46875 * 279.08296 * 8 7 6 10 10 C 1.34780 * 120.00278 * 84.04491 * 7 6 3 11 11 O 1.21588 * 119.99907 * 6.72118 * 10 7 6 12 12 C 1.47640 * 120.00336 * 186.71666 * 10 7 6 13 13 C 1.40013 * 119.89818 * 149.71976 * 12 10 7 14 14 C 1.36312 * 120.10836 * 180.25231 * 13 12 10 15 15 C 1.40885 * 119.89037 * 359.52671 * 14 13 12 16 16 C 1.41112 * 120.10517 * 180.22855 * 15 14 13 17 17 H 1.07997 * 120.00228 * 210.99318 * 16 15 14 18 18 C 1.40231 * 119.99668 * 30.98630 * 16 15 14 19 19 N 1.30644 * 120.00158 * 8.45585 * 18 16 15 20 20 Si 1.86799 * 119.99543 * 188.45259 * 18 16 15 21 21 H 1.48497 * 109.47416 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47133 * 120.00573 * 20 18 16 23 23 H 1.48509 * 109.47008 * 240.00120 * 20 18 16 24 24 C 1.40891 * 119.79628 * 0.49197 * 15 14 13 25 25 C 1.36313 * 119.88603 * 359.73824 * 24 15 14 26 26 H 1.08999 * 109.47348 * 59.99754 * 1 2 3 27 27 H 1.08998 * 109.47755 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47208 * 299.99811 * 1 2 3 29 29 H 1.09001 * 109.47177 * 239.99404 * 2 1 3 30 30 H 1.09003 * 109.46647 * 120.00106 * 2 1 3 31 31 H 1.08997 * 109.47622 * 304.99975 * 3 2 1 32 32 H 1.08998 * 109.46513 * 303.91504 * 4 3 2 33 33 H 1.09001 * 109.46907 * 63.91292 * 4 3 2 34 34 H 1.08996 * 109.46860 * 184.02541 * 5 4 3 35 35 H 1.09002 * 109.47132 * 304.02889 * 5 4 3 36 36 H 1.08996 * 109.46858 * 64.02909 * 5 4 3 37 37 H 1.08997 * 109.47377 * 301.25971 * 6 3 2 38 38 H 1.09007 * 109.46756 * 181.26336 * 6 3 2 39 39 H 1.08999 * 109.46587 * 39.08003 * 8 7 6 40 40 H 1.08990 * 109.47261 * 159.08525 * 8 7 6 41 41 H 1.09004 * 109.46794 * 59.99909 * 9 8 7 42 42 H 1.09001 * 109.46706 * 179.97438 * 9 8 7 43 43 H 1.08995 * 109.47402 * 300.00031 * 9 8 7 44 44 H 1.08001 * 119.94263 * 359.97438 * 13 12 10 45 45 H 1.07996 * 120.05123 * 179.72104 * 14 13 12 46 46 H 0.96998 * 119.99856 * 179.97438 * 19 18 16 47 47 H 1.07996 * 120.05662 * 179.70996 * 24 15 14 48 48 H 1.08009 * 119.94542 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0596 3.5960 1.2667 6 6 3.5649 1.4442 -0.1256 7 7 3.9512 0.8162 -1.3915 8 6 4.3196 -0.6014 -1.4236 9 6 5.7714 -0.7614 -0.9679 10 6 3.9677 1.5424 -2.5268 11 8 3.7817 2.7432 -2.4830 12 6 4.2117 0.8801 -3.8235 13 6 3.6402 1.4000 -4.9912 14 6 3.8585 0.7889 -6.1900 15 6 4.6687 -0.3619 -6.2542 16 6 4.9016 -0.9953 -7.4935 17 1 5.0590 -2.0630 -7.5331 18 6 4.9284 -0.2383 -8.6736 19 7 4.9037 1.0665 -8.6135 20 14 4.9996 -1.0958 -10.3317 21 1 5.0177 -2.5666 -10.1280 22 1 3.8070 -0.7222 -11.1338 23 1 6.2303 -0.6800 -11.0515 24 6 5.2413 -0.8816 -5.0765 25 6 5.0134 -0.2663 -3.8816 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6054 1.9815 -0.8418 32 1 0.5541 2.0638 1.4307 33 1 2.1258 1.6296 2.1444 34 1 1.8359 4.0653 2.2247 35 1 3.1301 3.6598 1.0719 36 1 1.5148 4.1095 0.4746 37 1 3.9985 0.8861 0.7041 38 1 3.9301 2.4710 -0.1031 39 1 3.6654 -1.1619 -0.7558 40 1 4.2137 -0.9815 -2.4396 41 1 5.8773 -0.3813 0.0482 42 1 6.0454 -1.8162 -0.9914 43 1 6.4257 -0.2008 -1.6356 44 1 3.0218 2.2840 -4.9413 45 1 3.4135 1.1881 -7.0894 46 1 4.9226 1.5901 -9.4298 47 1 5.8592 -1.7662 -5.1202 48 1 5.4522 -0.6637 -2.9782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270201988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:32 Heat of formation + Delta-G solvation = -17.846576 kcal Electronic energy + Delta-G solvation = -25465.892179 eV Core-core repulsion = 22099.569286 eV Total energy + Delta-G solvation = -3366.322892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.89071 -37.62843 -36.67253 -35.28817 -33.72257 -31.79425 -30.91374 -30.11339 -29.31185 -27.90146 -25.84799 -24.22821 -23.31095 -22.49089 -21.30588 -21.08372 -19.90155 -18.58908 -17.61746 -16.42699 -16.07122 -15.39695 -15.07408 -14.84367 -14.57812 -14.19726 -14.03754 -13.58597 -13.44670 -13.28075 -12.94070 -12.75326 -12.57015 -12.29934 -12.12024 -11.96336 -11.84467 -11.73391 -11.50145 -11.37168 -11.34381 -11.22678 -11.17095 -11.08985 -10.71453 -10.58549 -10.45416 -10.35051 -10.23283 -9.85269 -9.41735 -9.36372 -8.84925 -8.17541 -7.63382 -7.42059 -6.88156 -4.56636 2.30691 2.94025 2.99269 3.01144 3.04506 3.54928 3.79053 3.84597 4.57835 4.77378 4.87829 4.97544 5.14962 5.22498 5.31505 5.35313 5.41690 5.46147 5.52533 5.58815 5.70373 5.75277 5.79544 5.85031 5.89897 5.93014 5.94600 6.05543 6.11414 6.11772 6.17376 6.18805 6.28541 6.37339 6.38299 6.40218 6.50111 6.83741 6.89636 7.06677 7.08150 7.16442 7.49298 7.62166 7.81116 7.91065 8.07939 8.17294 8.48638 8.69858 8.79608 9.04270 10.03761 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022625 B = 0.003338 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.284125 B = 8385.399837 C = 8577.132988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.115 4.115 5 C -0.155 4.155 6 C 0.123 3.877 7 N -0.615 5.615 8 C 0.070 3.930 9 C -0.175 4.175 10 C 0.573 3.427 11 O -0.565 6.565 12 C -0.269 4.269 13 C -0.044 4.044 14 C -0.170 4.170 15 C 0.127 3.873 16 C -0.451 4.451 17 H 0.082 0.918 18 C 0.071 3.929 19 N -0.784 5.784 20 Si 0.915 3.085 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.230 4.230 25 C -0.088 4.088 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.123 0.877 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.284 0.716 47 H 0.097 0.903 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -3.332 13.951 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.124 4.124 4 C -0.153 4.153 5 C -0.212 4.212 6 C 0.000 4.000 7 N -0.348 5.348 8 C -0.052 4.052 9 C -0.234 4.234 10 C 0.368 3.632 11 O -0.446 6.446 12 C -0.273 4.273 13 C -0.064 4.064 14 C -0.189 4.189 15 C 0.124 3.876 16 C -0.480 4.480 17 H 0.100 0.900 18 C -0.148 4.148 19 N -0.409 5.409 20 Si 0.739 3.261 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.249 4.249 25 C -0.106 4.106 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.139 0.861 46 H 0.095 0.905 47 H 0.115 0.885 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.879 -2.486 13.821 14.568 hybrid contribution 0.158 -0.285 -0.762 0.828 sum -3.721 -2.770 13.059 13.859 Atomic orbital electron populations 1.21808 0.96224 1.01200 1.01668 1.21634 0.95665 0.96554 1.01955 1.21612 0.96304 0.96195 0.98316 1.21545 1.01009 0.95735 0.97003 1.21831 1.02035 0.96219 1.01125 1.21399 0.93869 0.99162 0.85609 1.47773 1.69016 1.10406 1.07588 1.22521 0.94836 0.82341 1.05515 1.22276 0.97592 1.01977 1.01520 1.18705 0.74632 0.85997 0.83832 1.90644 1.51949 1.14832 1.87175 1.18947 1.14082 1.02489 0.91831 1.20449 0.97194 0.96842 0.91867 1.21054 1.02012 0.99658 0.96187 1.17812 0.86681 0.90804 0.92294 1.19793 1.41611 0.95846 0.90772 0.89976 1.26045 0.92302 0.94737 1.01717 1.69721 1.33978 1.06153 1.31033 0.86148 0.78726 0.80665 0.80568 1.18282 1.19586 1.19775 1.20781 1.06946 1.04017 0.93204 1.21348 0.97248 0.94168 0.97873 0.92787 0.93098 0.92860 0.91153 0.92519 0.90621 0.91820 0.92325 0.93239 0.92308 0.92623 0.91483 0.90293 0.91583 0.85979 0.92732 0.91611 0.91601 0.88640 0.86065 0.90491 0.88489 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 37.16 0.36 -1.25 16 2 C -0.12 -1.40 4.63 -26.74 -0.12 -1.52 16 3 C -0.10 -1.34 2.06 -90.62 -0.19 -1.53 16 4 C -0.11 -1.20 5.26 -26.73 -0.14 -1.35 16 5 C -0.15 -1.69 9.74 37.16 0.36 -1.33 16 6 C 0.12 1.71 4.65 -4.04 -0.02 1.69 16 7 N -0.62 -10.09 2.11 -174.87 -0.37 -10.46 16 8 C 0.07 0.98 4.75 -4.04 -0.02 0.96 16 9 C -0.18 -2.14 9.14 37.16 0.34 -1.80 16 10 C 0.57 12.14 7.40 -12.42 -0.09 12.04 16 11 O -0.57 -13.58 16.34 5.29 0.09 -13.49 16 12 C -0.27 -6.11 5.60 -104.73 -0.59 -6.69 16 13 C -0.04 -1.08 9.52 -39.61 -0.38 -1.46 16 14 C -0.17 -4.35 8.58 -39.27 -0.34 -4.69 16 15 C 0.13 3.23 5.54 -106.80 -0.59 2.64 16 16 C -0.45 -11.33 9.05 -37.74 -0.34 -11.67 16 17 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 18 C 0.07 1.71 5.28 -17.31 -0.09 1.62 16 19 N -0.78 -19.68 10.86 55.56 0.60 -19.07 16 20 Si 0.91 17.81 29.57 -169.99 -5.03 12.79 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 C -0.23 -5.26 9.73 -39.27 -0.38 -5.64 16 25 C -0.09 -1.85 7.40 -39.61 -0.29 -2.14 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.50 6.48 -51.93 -0.34 0.17 16 29 H 0.07 0.92 5.81 -51.93 -0.30 0.62 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.63 6.39 -51.93 -0.33 0.30 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.68 6.32 -51.93 -0.33 0.35 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.08 1.23 5.76 -51.92 -0.30 0.93 16 39 H 0.07 0.77 6.30 -51.93 -0.33 0.45 16 40 H 0.12 1.93 3.96 -52.47 -0.21 1.72 16 41 H 0.05 0.60 7.99 -51.93 -0.41 0.19 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.93 7.08 -51.93 -0.37 0.56 16 44 H 0.10 2.30 7.91 -52.49 -0.42 1.89 16 45 H 0.12 3.21 6.30 -52.49 -0.33 2.88 16 46 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 47 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 48 H 0.13 2.19 2.60 -52.48 -0.14 2.05 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -28.18 368.35 -9.23 -37.42 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.56 Total: 9.38 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -2.52 Total: -22.10 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.23 Total: -29.54 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.18 -9.23 -37.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270201988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.570 kcal (2) G-P(sol) polarization free energy of solvation -28.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds