Wall clock time and date at job start Tue Mar 31 2020 08:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47169 * 2 1 4 4 C 1.53008 * 109.47299 * 65.00307 * 3 2 1 5 5 C 1.52999 * 109.47118 * 183.91964 * 4 3 2 6 6 C 1.53006 * 109.46857 * 184.99654 * 3 2 1 7 7 N 1.46496 * 109.46932 * 61.26536 * 6 3 2 8 8 C 1.46503 * 120.00176 * 264.04884 * 7 6 3 9 9 C 1.53002 * 109.46875 * 279.08296 * 8 7 6 10 10 C 1.34780 * 120.00278 * 84.04491 * 7 6 3 11 11 O 1.21588 * 119.99907 * 6.72118 * 10 7 6 12 12 C 1.47640 * 120.00336 * 186.71666 * 10 7 6 13 13 C 1.40013 * 119.89818 * 149.71976 * 12 10 7 14 14 C 1.36312 * 120.10836 * 180.25231 * 13 12 10 15 15 C 1.40885 * 119.89037 * 359.52671 * 14 13 12 16 16 C 1.41112 * 120.10517 * 180.22855 * 15 14 13 17 17 H 1.07997 * 120.00228 * 210.99318 * 16 15 14 18 18 C 1.40231 * 119.99668 * 30.98630 * 16 15 14 19 19 N 1.30644 * 120.00158 * 8.45585 * 18 16 15 20 20 Si 1.86799 * 119.99543 * 188.45259 * 18 16 15 21 21 H 1.48497 * 109.47416 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47133 * 120.00573 * 20 18 16 23 23 H 1.48509 * 109.47008 * 240.00120 * 20 18 16 24 24 C 1.40891 * 119.79628 * 0.49197 * 15 14 13 25 25 C 1.36313 * 119.88603 * 359.73824 * 24 15 14 26 26 H 1.08999 * 109.47348 * 59.99754 * 1 2 3 27 27 H 1.08998 * 109.47755 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47208 * 299.99811 * 1 2 3 29 29 H 1.09001 * 109.47177 * 239.99404 * 2 1 3 30 30 H 1.09003 * 109.46647 * 120.00106 * 2 1 3 31 31 H 1.08997 * 109.47622 * 304.99975 * 3 2 1 32 32 H 1.08998 * 109.46513 * 303.91504 * 4 3 2 33 33 H 1.09001 * 109.46907 * 63.91292 * 4 3 2 34 34 H 1.08996 * 109.46860 * 184.02541 * 5 4 3 35 35 H 1.09002 * 109.47132 * 304.02889 * 5 4 3 36 36 H 1.08996 * 109.46858 * 64.02909 * 5 4 3 37 37 H 1.08997 * 109.47377 * 301.25971 * 6 3 2 38 38 H 1.09007 * 109.46756 * 181.26336 * 6 3 2 39 39 H 1.08999 * 109.46587 * 39.08003 * 8 7 6 40 40 H 1.08990 * 109.47261 * 159.08525 * 8 7 6 41 41 H 1.09004 * 109.46794 * 59.99909 * 9 8 7 42 42 H 1.09001 * 109.46706 * 179.97438 * 9 8 7 43 43 H 1.08995 * 109.47402 * 300.00031 * 9 8 7 44 44 H 1.08001 * 119.94263 * 359.97438 * 13 12 10 45 45 H 1.07996 * 120.05123 * 179.72104 * 14 13 12 46 46 H 0.96998 * 119.99856 * 179.97438 * 19 18 16 47 47 H 1.07996 * 120.05662 * 179.70996 * 24 15 14 48 48 H 1.08009 * 119.94542 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0596 3.5960 1.2667 6 6 3.5649 1.4442 -0.1256 7 7 3.9512 0.8162 -1.3915 8 6 4.3196 -0.6014 -1.4236 9 6 5.7714 -0.7614 -0.9679 10 6 3.9677 1.5424 -2.5268 11 8 3.7817 2.7432 -2.4830 12 6 4.2117 0.8801 -3.8235 13 6 3.6402 1.4000 -4.9912 14 6 3.8585 0.7889 -6.1900 15 6 4.6687 -0.3619 -6.2542 16 6 4.9016 -0.9953 -7.4935 17 1 5.0590 -2.0630 -7.5331 18 6 4.9284 -0.2383 -8.6736 19 7 4.9037 1.0665 -8.6135 20 14 4.9996 -1.0958 -10.3317 21 1 5.0177 -2.5666 -10.1280 22 1 3.8070 -0.7222 -11.1338 23 1 6.2303 -0.6800 -11.0515 24 6 5.2413 -0.8816 -5.0765 25 6 5.0134 -0.2663 -3.8816 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6054 1.9815 -0.8418 32 1 0.5541 2.0638 1.4307 33 1 2.1258 1.6296 2.1444 34 1 1.8359 4.0653 2.2247 35 1 3.1301 3.6598 1.0719 36 1 1.5148 4.1095 0.4746 37 1 3.9985 0.8861 0.7041 38 1 3.9301 2.4710 -0.1031 39 1 3.6654 -1.1619 -0.7558 40 1 4.2137 -0.9815 -2.4396 41 1 5.8773 -0.3813 0.0482 42 1 6.0454 -1.8162 -0.9914 43 1 6.4257 -0.2008 -1.6356 44 1 3.0218 2.2840 -4.9413 45 1 3.4135 1.1881 -7.0894 46 1 4.9226 1.5901 -9.4298 47 1 5.8592 -1.7662 -5.1202 48 1 5.4522 -0.6637 -2.9782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270201988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:32 Heat of formation + Delta-G solvation = -30.473873 kcal Electronic energy + Delta-G solvation = -25466.439739 eV Core-core repulsion = 22099.569286 eV Total energy + Delta-G solvation = -3366.870453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40218 -39.18638 -38.14465 -36.65555 -35.48679 -32.68856 -32.24692 -31.93261 -30.94840 -29.17406 -27.48881 -25.38589 -24.53811 -23.56045 -23.00120 -22.73321 -21.03978 -20.04647 -19.43719 -17.97223 -17.45829 -17.16816 -16.36565 -16.28417 -15.79525 -15.38689 -15.24944 -15.04468 -14.80406 -14.62523 -14.34941 -14.25912 -13.79363 -13.68294 -13.41493 -13.38539 -13.29143 -12.95620 -12.82043 -12.76884 -12.72314 -12.42179 -12.35470 -12.26076 -12.11142 -11.89749 -11.61397 -11.51032 -11.35345 -11.27988 -11.18775 -11.14666 -10.52208 -9.62358 -9.44045 -9.26392 -8.68739 -6.48027 0.49955 1.11611 1.38847 1.41759 1.55083 2.05318 2.18140 2.24190 2.77390 3.63532 3.74922 3.92391 3.99985 4.04326 4.07663 4.35163 4.36526 4.38324 4.41132 4.45870 4.51318 4.60020 4.65532 4.75793 4.80469 4.86922 4.92932 4.97037 4.97888 5.03109 5.05356 5.08649 5.13236 5.19911 5.24269 5.27070 5.28100 5.40116 5.42953 5.46995 5.52848 5.61717 5.77585 5.81132 5.99686 6.02926 6.22773 6.56729 6.59634 6.81259 6.91393 7.41084 8.25933 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022625 B = 0.003338 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.284125 B = 8385.399837 C = 8577.132988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.100 4.100 4 C -0.108 4.108 5 C -0.156 4.156 6 C 0.119 3.881 7 N -0.602 5.602 8 C 0.064 3.936 9 C -0.173 4.173 10 C 0.569 3.431 11 O -0.605 6.605 12 C -0.278 4.278 13 C -0.060 4.060 14 C -0.190 4.190 15 C 0.100 3.900 16 C -0.480 4.480 17 H 0.090 0.910 18 C 0.028 3.972 19 N -0.822 5.822 20 Si 0.991 3.009 21 H -0.250 1.250 22 H -0.267 1.267 23 H -0.267 1.267 24 C -0.239 4.239 25 C -0.073 4.073 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.034 0.966 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.290 0.710 47 H 0.118 0.882 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 -5.849 16.459 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.120 4.120 4 C -0.146 4.146 5 C -0.213 4.213 6 C -0.003 4.003 7 N -0.333 5.333 8 C -0.057 4.057 9 C -0.230 4.230 10 C 0.362 3.638 11 O -0.489 6.489 12 C -0.282 4.282 13 C -0.079 4.079 14 C -0.209 4.209 15 C 0.097 3.903 16 C -0.509 4.509 17 H 0.109 0.891 18 C -0.187 4.187 19 N -0.447 5.447 20 Si 0.811 3.189 21 H -0.173 1.173 22 H -0.192 1.192 23 H -0.191 1.191 24 C -0.258 4.258 25 C -0.090 4.090 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.120 0.880 46 H 0.101 0.899 47 H 0.136 0.864 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.303 -5.036 16.376 17.449 hybrid contribution -0.056 0.529 -1.383 1.481 sum -3.359 -4.507 14.994 16.013 Atomic orbital electron populations 1.21799 0.95684 1.01904 1.01406 1.21617 0.96204 0.95325 1.02340 1.21541 0.95171 0.97096 0.98203 1.21518 1.01834 0.95021 0.96189 1.21834 1.01054 0.96911 1.01487 1.21637 0.94897 0.98634 0.85134 1.47770 1.67187 1.11281 1.07024 1.22688 0.97130 0.80637 1.05258 1.22257 0.95195 1.03649 1.01940 1.18547 0.74831 0.85635 0.84742 1.90618 1.53925 1.16491 1.87847 1.19248 1.13777 1.03031 0.92190 1.20508 0.97838 0.96832 0.92724 1.20942 1.03372 1.00833 0.95793 1.18168 0.87184 0.91062 0.93859 1.20102 1.42866 0.96418 0.91483 0.89148 1.26991 0.91170 0.95178 1.05394 1.69803 1.34714 1.07778 1.32437 0.85012 0.78809 0.79692 0.75342 1.17345 1.19157 1.19144 1.21068 1.06983 1.04818 0.92946 1.21757 0.95646 0.92757 0.98873 0.94891 0.91900 0.91346 0.92928 0.89715 0.94864 0.90892 0.89786 0.91141 0.93327 0.94696 0.87658 0.92220 0.88271 0.88063 0.90864 0.88802 0.93702 0.89719 0.88014 0.89868 0.86387 0.81664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.67 71.98 0.70 -2.22 16 2 C -0.12 -2.41 4.63 30.59 0.14 -2.27 16 3 C -0.10 -2.44 2.06 -10.79 -0.02 -2.47 16 4 C -0.11 -1.99 5.26 30.60 0.16 -1.83 16 5 C -0.16 -3.24 9.74 71.98 0.70 -2.54 16 6 C 0.12 3.10 4.65 86.38 0.40 3.50 16 7 N -0.60 -19.04 2.11 -825.43 -1.74 -20.78 16 8 C 0.06 1.59 4.75 86.38 0.41 2.00 16 9 C -0.17 -3.50 9.14 71.98 0.66 -2.84 16 10 C 0.57 24.61 7.40 86.73 0.64 25.25 16 11 O -0.60 -30.41 16.34 -3.99 -0.07 -30.47 16 12 C -0.28 -12.99 5.60 -19.93 -0.11 -13.10 16 13 C -0.06 -3.11 9.52 22.25 0.21 -2.90 16 14 C -0.19 -10.35 8.58 22.47 0.19 -10.15 16 15 C 0.10 5.27 5.54 -21.28 -0.12 5.15 16 16 C -0.48 -24.63 9.05 23.46 0.21 -24.42 16 17 H 0.09 4.32 7.86 -2.91 -0.02 4.30 16 18 C 0.03 1.39 5.28 85.35 0.45 1.84 16 19 N -0.82 -42.89 10.86 21.87 0.24 -42.65 16 20 Si 0.99 36.67 29.57 68.60 2.03 38.70 16 21 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 22 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 23 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 24 C -0.24 -10.93 9.73 22.47 0.22 -10.71 16 25 C -0.07 -3.02 7.40 22.25 0.16 -2.85 16 26 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.11 6.48 -2.39 -0.02 1.09 16 29 H 0.05 1.26 5.81 -2.39 -0.01 1.25 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.24 6.39 -2.39 -0.02 1.22 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.10 6.32 -2.39 -0.02 1.09 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 1.98 7.87 -2.39 -0.02 1.96 16 38 H 0.06 1.83 5.76 -2.38 -0.01 1.82 16 39 H 0.10 1.88 6.30 -2.39 -0.02 1.87 16 40 H 0.10 2.98 3.96 -2.90 -0.01 2.97 16 41 H 0.07 1.26 7.99 -2.39 -0.02 1.24 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.04 1.12 7.08 -2.39 -0.02 1.10 16 44 H 0.08 4.45 7.91 -2.91 -0.02 4.43 16 45 H 0.10 5.82 6.30 -2.91 -0.02 5.80 16 46 H 0.29 13.70 8.29 -92.71 -0.77 12.93 16 47 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 48 H 0.17 5.44 2.60 -2.91 -0.01 5.43 16 Total: -1.00 -66.05 368.35 6.42 -59.63 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.95 Total: 36.13 kcal Atomic # 6 Polarization: -45.56 SS G_CDS: 5.01 Total: -40.55 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -1.51 Total: -63.44 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.07 Total: -30.47 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -66.05 6.42 -59.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270201988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.157 kcal (2) G-P(sol) polarization free energy of solvation -66.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds