Wall clock time and date at job start Tue Mar 31 2020 08:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 112.84911 * 2 1 4 4 C 1.53776 * 113.61203 * 131.19255 * 2 1 3 5 5 H 1.09000 * 113.61846 * 25.35031 * 4 2 1 6 6 N 1.46908 * 113.61479 * 254.53403 * 4 2 1 7 7 C 1.46901 * 110.99757 * 155.00442 * 6 4 2 8 8 C 1.53000 * 109.46565 * 180.02562 * 7 6 4 9 9 C 1.50708 * 109.46973 * 179.97438 * 8 7 6 10 10 H 1.07991 * 119.99789 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00008 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99938 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.53775 * 87.08181 * 139.98452 * 4 2 1 18 18 C 1.53770 * 113.61499 * 228.69210 * 2 1 3 19 19 H 1.09005 * 113.61570 * 334.56616 * 18 2 1 20 20 O 1.42904 * 113.61647 * 105.47144 * 18 2 1 21 21 C 1.42895 * 113.99789 * 209.99803 * 20 18 2 22 22 C 1.50707 * 109.46914 * 179.97438 * 21 20 18 23 23 C 1.38230 * 120.00162 * 269.73273 * 22 21 20 24 24 C 1.38233 * 119.99840 * 179.76964 * 23 22 21 25 25 C 1.38238 * 119.99955 * 0.49665 * 24 23 22 26 26 C 1.38230 * 120.00182 * 359.75382 * 25 24 23 27 27 C 1.38234 * 119.99722 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47133 * 288.80758 * 1 2 3 29 29 H 1.09002 * 109.46707 * 48.80619 * 1 2 3 30 30 H 1.08994 * 109.47331 * 168.80478 * 1 2 3 31 31 H 1.08997 * 109.47325 * 191.19457 * 3 2 1 32 32 H 1.09004 * 109.47049 * 311.19217 * 3 2 1 33 33 H 1.09004 * 109.47143 * 71.19434 * 3 2 1 34 34 H 1.00896 * 111.00078 * 31.04045 * 6 4 2 35 35 H 1.08996 * 109.47370 * 59.99954 * 7 6 4 36 36 H 1.08996 * 109.46858 * 299.98937 * 7 6 4 37 37 H 1.08994 * 109.48028 * 59.99667 * 8 7 6 38 38 H 1.09000 * 109.47206 * 299.99521 * 8 7 6 39 39 H 0.96997 * 119.99848 * 180.02562 * 12 11 9 40 40 H 1.09000 * 113.61740 * 89.11735 * 17 4 2 41 41 H 1.09001 * 113.61560 * 220.02483 * 17 4 2 42 42 H 1.08997 * 109.47471 * 299.99676 * 21 20 18 43 43 H 1.08991 * 109.47293 * 60.00395 * 21 20 18 44 44 H 1.07996 * 119.99766 * 359.97438 * 23 22 21 45 45 H 1.08004 * 120.00411 * 180.22794 * 24 23 22 46 46 H 1.08002 * 120.00125 * 179.73030 * 25 24 23 47 47 H 1.07999 * 120.00285 * 179.97438 * 26 25 24 48 48 H 1.08005 * 119.99663 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 1 1.4939 -1.7513 1.3518 6 7 2.7106 -0.2122 2.2123 7 6 2.7356 -1.0702 3.4044 8 6 3.3282 -0.2915 4.5806 9 6 3.3533 -1.1715 5.8039 10 1 2.9841 -2.1848 5.7478 11 6 3.8487 -0.6832 6.9943 12 7 3.8712 -1.4512 8.0616 13 14 4.4881 1.0693 7.0911 14 1 5.9374 1.0861 6.7679 15 1 4.2810 1.5967 8.4638 16 1 3.7542 1.9185 6.1187 17 6 3.1923 -1.3135 0.0014 18 6 2.1460 -0.9300 -1.0584 19 1 1.4945 -1.7549 -1.3472 20 8 2.6954 -0.2360 -2.1803 21 6 2.6467 -0.9757 -3.4019 22 6 3.2485 -0.1527 -4.5118 23 6 2.4467 0.6859 -5.2632 24 6 2.9996 1.4444 -6.2780 25 6 4.3525 1.3565 -6.5482 26 6 5.1534 0.5140 -5.8001 27 6 4.6015 -0.2402 -4.7816 28 1 -0.3633 0.3313 0.9728 29 1 -0.3633 0.6769 -0.7733 30 1 -0.3634 -1.0080 -0.1995 31 1 3.1942 1.3534 -0.1995 32 1 1.6415 2.0076 -0.7733 33 1 1.9599 1.8734 0.9728 34 1 2.2034 0.6414 2.3916 35 1 3.3472 -1.9503 3.2059 36 1 1.7201 -1.3810 3.6497 37 1 2.7164 0.5884 4.7791 38 1 4.3436 0.0198 4.3357 39 1 4.2194 -1.1075 8.8992 40 1 4.0711 -0.6687 0.0008 41 1 3.4443 -2.3740 0.0025 42 1 3.2107 -1.9015 -3.2889 43 1 1.6100 -1.2090 -3.6443 44 1 1.3890 0.7510 -5.0552 45 1 2.3739 2.1024 -6.8628 46 1 4.7837 1.9458 -7.3439 47 1 6.2102 0.4450 -6.0114 48 1 5.2272 -0.8988 -4.1974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273128399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:03 Heat of formation + Delta-G solvation = -9.638308 kcal Electronic energy + Delta-G solvation = -24202.921526 eV Core-core repulsion = 20836.954572 eV Total energy + Delta-G solvation = -3365.966955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31683 -39.45235 -36.85585 -34.67781 -32.51741 -31.98896 -31.18329 -30.53184 -29.28189 -27.43944 -26.32791 -24.48622 -22.87374 -22.69949 -22.08426 -21.59572 -20.39976 -18.29277 -17.26392 -16.88979 -16.62186 -15.97724 -15.69819 -15.33896 -14.99632 -14.66818 -14.26534 -14.18643 -13.67996 -13.55660 -13.43266 -13.14801 -13.07823 -12.88131 -12.51147 -12.21062 -12.08090 -12.03595 -11.89837 -11.58151 -11.36594 -11.28962 -11.21212 -11.01787 -10.72744 -10.64276 -10.28002 -10.08644 -9.76996 -9.57805 -9.35428 -9.20118 -9.19619 -9.10454 -8.51559 -7.89182 -6.02480 -4.00603 0.98720 1.12418 3.30419 3.34886 3.41500 3.46614 3.85927 4.39468 4.47087 4.48299 4.53113 4.56499 4.70923 4.79577 4.88197 4.89176 4.95365 5.03118 5.11260 5.22555 5.23875 5.32208 5.35915 5.37485 5.52387 5.66728 5.68216 5.75295 5.77497 5.91986 6.00868 6.01221 6.06490 6.15467 6.19582 6.21611 6.22368 6.32178 6.34744 6.47051 6.55313 6.69624 6.81407 7.17344 7.20644 7.42029 7.66551 7.79529 7.94795 8.55404 9.01680 9.60110 11.10853 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023924 B = 0.002403 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.075030 B =11647.631308 C =12016.736238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.109 4.109 4 C 0.070 3.930 5 H 0.070 0.930 6 N -0.676 5.676 7 C 0.073 3.927 8 C -0.010 4.010 9 C -0.520 4.520 10 H 0.070 0.930 11 C 0.066 3.934 12 N -0.904 5.904 13 Si 0.883 3.117 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.265 1.265 17 C -0.139 4.139 18 C 0.069 3.931 19 H 0.083 0.917 20 O -0.359 6.359 21 C 0.100 3.900 22 C -0.087 4.087 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.098 4.098 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.337 0.663 35 H 0.063 0.937 36 H 0.021 0.979 37 H 0.012 0.988 38 H 0.021 0.979 39 H 0.263 0.737 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 3.766 -30.248 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C -0.167 4.167 4 C -0.041 4.041 5 H 0.088 0.912 6 N -0.308 5.308 7 C -0.055 4.055 8 C -0.048 4.048 9 C -0.559 4.559 10 H 0.088 0.912 11 C -0.135 4.135 12 N -0.544 5.544 13 Si 0.711 3.289 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.190 1.190 17 C -0.178 4.178 18 C 0.010 3.990 19 H 0.101 0.899 20 O -0.277 6.277 21 C 0.024 3.976 22 C -0.087 4.087 23 C -0.118 4.118 24 C -0.143 4.143 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.116 4.116 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.031 0.969 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.382 3.807 -30.197 30.624 hybrid contribution -0.669 0.484 0.466 0.948 sum -4.051 4.291 -29.732 30.312 Atomic orbital electron populations 1.21792 0.94320 1.01502 1.02029 1.22433 0.94779 0.96653 0.94732 1.21254 1.01522 0.93039 1.00865 1.22787 0.95071 0.95966 0.90304 0.91172 1.60721 1.57010 1.07847 1.05237 1.22004 0.98521 0.96112 0.88886 1.19545 0.96251 0.95966 0.93021 1.21075 1.41614 1.00319 0.92852 0.91168 1.25018 0.95276 0.97621 0.95608 1.69918 1.47000 1.36476 1.00960 0.86725 0.79720 0.85430 0.77071 1.20253 1.21548 1.18971 1.23551 0.98756 1.01241 0.94250 1.23770 0.95794 0.94653 0.84745 0.89907 1.88051 1.81956 1.42118 1.15620 1.21330 0.99171 0.93435 0.83691 1.19651 0.94027 0.98617 0.96381 1.21066 0.99886 0.95487 0.95331 1.21145 0.95375 0.99624 0.98143 1.21195 0.94027 0.98663 0.99650 1.21166 0.99936 0.96959 0.96121 1.21110 0.94330 0.99092 0.97086 0.92226 0.92488 0.92799 0.91476 0.92959 0.92482 0.84360 0.91826 0.96089 0.96933 0.96100 0.92763 0.88391 0.91843 0.92540 0.92730 0.86032 0.86014 0.86108 0.85930 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.19 37.16 0.34 -1.10 16 2 C -0.09 -1.01 1.26 -153.70 -0.19 -1.21 16 3 C -0.11 -1.36 7.85 37.16 0.29 -1.07 16 4 C 0.07 0.97 3.59 -66.90 -0.24 0.73 16 5 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 6 N -0.68 -11.44 6.07 -105.87 -0.64 -12.09 16 7 C 0.07 1.49 5.47 -3.82 -0.02 1.47 16 8 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 9 C -0.52 -15.06 9.66 -34.44 -0.33 -15.40 16 10 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 12 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 13 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 17 C -0.14 -1.82 7.36 -25.92 -0.19 -2.01 16 18 C 0.07 0.77 3.72 -25.92 -0.10 0.67 16 19 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 20 O -0.36 -4.21 9.43 -35.23 -0.33 -4.55 16 21 C 0.10 0.94 5.90 36.01 0.21 1.15 16 22 C -0.09 -0.84 5.51 -104.62 -0.58 -1.41 16 23 C -0.10 -0.88 9.70 -39.59 -0.38 -1.27 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 26 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 27 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.51 7.94 -51.93 -0.41 0.10 16 31 H 0.07 0.93 7.19 -51.93 -0.37 0.55 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.71 6.71 -51.93 -0.35 0.36 16 34 H 0.34 5.48 6.93 -39.29 -0.27 5.21 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.02 0.43 8.13 -51.93 -0.42 0.00 16 37 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 38 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.10 1.43 7.66 -51.93 -0.40 1.03 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 43 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 48 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -31.67 384.83 -10.51 -42.18 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.45 Total: 1.94 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -2.98 Total: -23.36 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.13 Total: -39.55 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.33 Total: -4.55 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.67 -10.51 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273128399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.545 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds