Wall clock time and date at job start Tue Mar 31 2020 08:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 112.84911 * 2 1 4 4 C 1.53776 * 113.61203 * 131.19255 * 2 1 3 5 5 H 1.09000 * 113.61846 * 25.35031 * 4 2 1 6 6 N 1.46908 * 113.61479 * 254.53403 * 4 2 1 7 7 C 1.46901 * 110.99757 * 155.00442 * 6 4 2 8 8 C 1.53000 * 109.46565 * 180.02562 * 7 6 4 9 9 C 1.50708 * 109.46973 * 179.97438 * 8 7 6 10 10 H 1.07991 * 119.99789 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00008 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99938 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.53775 * 87.08181 * 139.98452 * 4 2 1 18 18 C 1.53770 * 113.61499 * 228.69210 * 2 1 3 19 19 H 1.09005 * 113.61570 * 334.56616 * 18 2 1 20 20 O 1.42904 * 113.61647 * 105.47144 * 18 2 1 21 21 C 1.42895 * 113.99789 * 209.99803 * 20 18 2 22 22 C 1.50707 * 109.46914 * 179.97438 * 21 20 18 23 23 C 1.38230 * 120.00162 * 269.73273 * 22 21 20 24 24 C 1.38233 * 119.99840 * 179.76964 * 23 22 21 25 25 C 1.38238 * 119.99955 * 0.49665 * 24 23 22 26 26 C 1.38230 * 120.00182 * 359.75382 * 25 24 23 27 27 C 1.38234 * 119.99722 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47133 * 288.80758 * 1 2 3 29 29 H 1.09002 * 109.46707 * 48.80619 * 1 2 3 30 30 H 1.08994 * 109.47331 * 168.80478 * 1 2 3 31 31 H 1.08997 * 109.47325 * 191.19457 * 3 2 1 32 32 H 1.09004 * 109.47049 * 311.19217 * 3 2 1 33 33 H 1.09004 * 109.47143 * 71.19434 * 3 2 1 34 34 H 1.00896 * 111.00078 * 31.04045 * 6 4 2 35 35 H 1.08996 * 109.47370 * 59.99954 * 7 6 4 36 36 H 1.08996 * 109.46858 * 299.98937 * 7 6 4 37 37 H 1.08994 * 109.48028 * 59.99667 * 8 7 6 38 38 H 1.09000 * 109.47206 * 299.99521 * 8 7 6 39 39 H 0.96997 * 119.99848 * 180.02562 * 12 11 9 40 40 H 1.09000 * 113.61740 * 89.11735 * 17 4 2 41 41 H 1.09001 * 113.61560 * 220.02483 * 17 4 2 42 42 H 1.08997 * 109.47471 * 299.99676 * 21 20 18 43 43 H 1.08991 * 109.47293 * 60.00395 * 21 20 18 44 44 H 1.07996 * 119.99766 * 359.97438 * 23 22 21 45 45 H 1.08004 * 120.00411 * 180.22794 * 24 23 22 46 46 H 1.08002 * 120.00125 * 179.73030 * 25 24 23 47 47 H 1.07999 * 120.00285 * 179.97438 * 26 25 24 48 48 H 1.08005 * 119.99663 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 1 1.4939 -1.7513 1.3518 6 7 2.7106 -0.2122 2.2123 7 6 2.7356 -1.0702 3.4044 8 6 3.3282 -0.2915 4.5806 9 6 3.3533 -1.1715 5.8039 10 1 2.9841 -2.1848 5.7478 11 6 3.8487 -0.6832 6.9943 12 7 3.8712 -1.4512 8.0616 13 14 4.4881 1.0693 7.0911 14 1 5.9374 1.0861 6.7679 15 1 4.2810 1.5967 8.4638 16 1 3.7542 1.9185 6.1187 17 6 3.1923 -1.3135 0.0014 18 6 2.1460 -0.9300 -1.0584 19 1 1.4945 -1.7549 -1.3472 20 8 2.6954 -0.2360 -2.1803 21 6 2.6467 -0.9757 -3.4019 22 6 3.2485 -0.1527 -4.5118 23 6 2.4467 0.6859 -5.2632 24 6 2.9996 1.4444 -6.2780 25 6 4.3525 1.3565 -6.5482 26 6 5.1534 0.5140 -5.8001 27 6 4.6015 -0.2402 -4.7816 28 1 -0.3633 0.3313 0.9728 29 1 -0.3633 0.6769 -0.7733 30 1 -0.3634 -1.0080 -0.1995 31 1 3.1942 1.3534 -0.1995 32 1 1.6415 2.0076 -0.7733 33 1 1.9599 1.8734 0.9728 34 1 2.2034 0.6414 2.3916 35 1 3.3472 -1.9503 3.2059 36 1 1.7201 -1.3810 3.6497 37 1 2.7164 0.5884 4.7791 38 1 4.3436 0.0198 4.3357 39 1 4.2194 -1.1075 8.8992 40 1 4.0711 -0.6687 0.0008 41 1 3.4443 -2.3740 0.0025 42 1 3.2107 -1.9015 -3.2889 43 1 1.6100 -1.2090 -3.6443 44 1 1.3890 0.7510 -5.0552 45 1 2.3739 2.1024 -6.8628 46 1 4.7837 1.9458 -7.3439 47 1 6.2102 0.4450 -6.0114 48 1 5.2272 -0.8988 -4.1974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273128399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:02 Heat of formation + Delta-G solvation = -27.457672 kcal Electronic energy + Delta-G solvation = -24203.694232 eV Core-core repulsion = 20836.954572 eV Total energy + Delta-G solvation = -3366.739661 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28597 -40.09879 -37.80411 -36.27022 -34.50664 -32.70904 -31.78119 -31.70234 -30.92170 -28.36032 -27.11511 -26.19277 -23.80058 -23.47054 -23.22962 -22.24885 -22.22419 -19.35423 -18.93037 -18.00507 -17.55961 -16.90700 -16.43432 -16.38468 -16.27304 -15.97548 -15.56191 -15.22348 -15.01059 -14.68090 -14.37054 -14.25899 -14.04647 -14.00739 -13.68851 -13.38852 -13.22396 -13.06177 -13.03357 -12.80039 -12.70107 -12.45307 -12.11241 -12.00726 -11.94272 -11.86718 -11.73645 -11.57651 -11.42017 -11.27365 -11.03327 -10.77516 -10.23518 -9.81328 -9.73954 -9.27508 -8.30481 -6.34833 0.35796 0.50889 1.37211 1.37908 1.50883 2.36219 2.59738 3.05022 3.09609 3.38939 3.46948 3.62083 3.86039 3.90106 3.97768 4.02770 4.16694 4.28613 4.30707 4.34123 4.38729 4.46230 4.49769 4.55166 4.58844 4.67194 4.76915 4.79949 4.82672 4.95559 4.97747 5.02266 5.09234 5.11047 5.15368 5.16535 5.18439 5.33320 5.45887 5.51602 5.54590 5.56361 5.62017 5.63592 5.68733 6.10833 6.21030 6.27968 6.37055 6.54540 6.73832 7.29969 8.86095 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023924 B = 0.002403 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.075030 B =11647.631308 C =12016.736238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 C -0.105 4.105 4 C 0.061 3.939 5 H 0.073 0.927 6 N -0.677 5.677 7 C 0.088 3.912 8 C -0.004 4.004 9 C -0.533 4.533 10 H 0.032 0.968 11 C 0.004 3.996 12 N -0.950 5.950 13 Si 0.955 3.045 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.247 1.247 17 C -0.142 4.142 18 C 0.081 3.919 19 H 0.105 0.895 20 O -0.374 6.374 21 C 0.098 3.902 22 C -0.105 4.105 23 C -0.111 4.111 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.133 4.133 27 C -0.116 4.116 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.342 0.658 35 H 0.052 0.948 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.267 0.733 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.132 0.868 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.138 0.862 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.682 5.450 -32.450 33.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.080 4.080 3 C -0.163 4.163 4 C -0.049 4.049 5 H 0.091 0.909 6 N -0.309 5.309 7 C -0.041 4.041 8 C -0.042 4.042 9 C -0.571 4.571 10 H 0.050 0.950 11 C -0.193 4.193 12 N -0.591 5.591 13 Si 0.778 3.222 14 H -0.194 1.194 15 H -0.209 1.209 16 H -0.170 1.170 17 C -0.181 4.181 18 C 0.023 3.977 19 H 0.122 0.878 20 O -0.293 6.293 21 C 0.022 3.978 22 C -0.105 4.105 23 C -0.129 4.129 24 C -0.149 4.149 25 C -0.141 4.141 26 C -0.151 4.151 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.162 0.838 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.150 0.850 45 H 0.160 0.840 46 H 0.161 0.839 47 H 0.156 0.844 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.920 5.488 -32.431 33.124 hybrid contribution -0.495 -0.114 1.092 1.204 sum -4.415 5.375 -31.339 32.101 Atomic orbital electron populations 1.21771 0.92770 1.02577 1.02194 1.22377 0.95900 0.95928 0.93817 1.21196 1.00483 0.93636 1.00961 1.22911 0.95860 0.96596 0.89543 0.90927 1.60632 1.57997 1.07727 1.04516 1.21654 0.97694 0.95639 0.89092 1.19433 0.96522 0.95643 0.92588 1.21405 1.41173 0.99518 0.95014 0.94984 1.26010 0.95537 1.02644 0.95082 1.70064 1.48309 1.38912 1.01791 0.85593 0.79373 0.79538 0.77701 1.19424 1.20867 1.17038 1.23523 0.98413 1.01134 0.95032 1.23667 0.94893 0.94792 0.84387 0.87762 1.88030 1.82106 1.42821 1.16372 1.21460 1.00229 0.93361 0.82736 1.19808 0.94407 0.99389 0.96896 1.21294 1.00493 0.95547 0.95605 1.21468 0.95864 0.99576 0.97993 1.21534 0.94107 0.98487 0.99945 1.21445 1.00980 0.96802 0.95883 1.21296 0.94557 0.99756 0.97808 0.92701 0.91377 0.91623 0.93255 0.92078 0.92738 0.83832 0.92898 0.96436 0.96265 0.96247 0.92446 0.90261 0.91400 0.92051 0.91175 0.85002 0.83971 0.83937 0.84365 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 2 C -0.08 -1.75 1.26 -51.66 -0.06 -1.81 16 3 C -0.11 -2.48 7.85 71.98 0.56 -1.92 16 4 C 0.06 1.64 3.59 45.44 0.16 1.80 16 5 H 0.07 1.95 7.82 -2.39 -0.02 1.93 16 6 N -0.68 -22.36 6.07 -488.86 -2.97 -25.33 16 7 C 0.09 3.59 5.47 86.30 0.47 4.07 16 8 C 0.00 -0.20 4.30 29.85 0.13 -0.07 16 9 C -0.53 -31.47 9.66 25.60 0.25 -31.23 16 10 H 0.03 2.07 7.99 -2.92 -0.02 2.05 16 11 C 0.00 0.24 5.47 84.65 0.46 0.71 16 12 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 13 Si 0.95 45.47 27.47 68.60 1.88 47.36 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 17 C -0.14 -3.60 7.36 31.12 0.23 -3.37 16 18 C 0.08 1.67 3.72 31.12 0.12 1.78 16 19 H 0.10 1.72 7.69 -2.38 -0.02 1.70 16 20 O -0.37 -8.25 9.43 -148.98 -1.41 -9.65 16 21 C 0.10 1.69 5.90 71.24 0.42 2.11 16 22 C -0.10 -1.92 5.51 -19.86 -0.11 -2.03 16 23 C -0.11 -1.81 9.70 22.27 0.22 -1.59 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 25 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 26 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 27 C -0.12 -2.07 9.70 22.27 0.22 -1.86 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.05 7.94 -2.39 -0.02 1.03 16 31 H 0.05 1.33 7.19 -2.39 -0.02 1.31 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.29 6.71 -2.38 -0.02 1.27 16 34 H 0.34 10.70 6.93 -89.70 -0.62 10.08 16 35 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.02 0.72 8.13 -2.39 -0.02 0.70 16 37 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 38 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 39 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.08 2.32 7.66 -2.39 -0.02 2.30 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 0.97 8.09 -2.39 -0.02 0.95 16 43 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 44 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 45 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 46 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 47 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.12 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -68.68 384.83 2.44 -66.24 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.23 Total: 21.68 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 4.39 Total: -40.09 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -2.67 Total: -85.54 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -1.41 Total: -9.65 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.36 kcal Total: -68.68 2.44 -66.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273128399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.787 kcal (2) G-P(sol) polarization free energy of solvation -68.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds