Wall clock time and date at job start Tue Mar 31 2020 09:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 C 1.52994 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47306 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46852 * 54.99637 * 5 4 3 7 7 C 1.53007 * 109.46983 * 295.00089 * 5 4 3 8 8 C 1.50695 * 109.47046 * 174.99915 * 5 4 3 9 9 O 1.21276 * 120.00241 * 359.97438 * 8 5 4 10 10 N 1.34777 * 119.99779 * 179.97438 * 8 5 4 11 11 C 1.46494 * 120.00188 * 180.02562 * 10 8 5 12 12 H 1.09000 * 109.47081 * 325.00162 * 11 10 8 13 13 C 1.53001 * 109.47302 * 205.00083 * 11 10 8 14 14 C 1.50701 * 109.47232 * 64.99671 * 13 11 10 15 15 H 1.08001 * 119.99717 * 0.02562 * 14 13 11 16 16 C 1.37876 * 119.99813 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00272 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99744 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46889 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47032 * 120.00156 * 18 16 14 21 21 H 1.48500 * 109.46727 * 240.00432 * 18 16 14 22 22 C 1.50703 * 109.47581 * 84.99858 * 11 10 8 23 23 C 1.38235 * 120.00292 * 220.00303 * 22 11 10 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 11 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 39.97596 * 22 11 10 28 28 H 1.09005 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47622 * 300.00451 * 1 2 3 30 30 H 1.09005 * 109.47064 * 60.00409 * 1 2 3 31 31 H 1.08999 * 109.47622 * 239.99549 * 2 1 3 32 32 H 1.09005 * 109.47064 * 119.99590 * 2 1 3 33 33 H 1.08999 * 109.47221 * 59.99303 * 3 2 1 34 34 H 1.09005 * 109.46797 * 299.99754 * 3 2 1 35 35 H 1.08999 * 109.47355 * 59.99624 * 4 3 2 36 36 H 1.09005 * 109.47186 * 299.99754 * 4 3 2 37 37 H 1.09002 * 109.46690 * 59.99638 * 7 5 4 38 38 H 1.08995 * 109.46969 * 179.97438 * 7 5 4 39 39 H 1.09002 * 109.46879 * 300.00009 * 7 5 4 40 40 H 0.97005 * 119.99889 * 359.97438 * 10 8 5 41 41 H 1.09007 * 109.47213 * 184.99910 * 13 11 10 42 42 H 1.08998 * 109.47120 * 304.99384 * 13 11 10 43 43 H 0.97001 * 120.00530 * 179.97438 * 17 16 14 44 44 H 1.08001 * 119.99730 * 359.97438 * 23 22 11 45 45 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 47 47 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 48 48 H 1.07997 * 120.00455 * 0.02562 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0013 6 1 3.6449 3.4238 0.8430 7 6 3.6757 3.5695 -1.3061 8 6 5.5818 2.8868 0.1258 9 8 6.1848 1.8377 0.2065 10 7 6.2548 4.0543 0.1474 11 6 7.7148 4.0561 0.2678 12 1 8.0274 3.2321 0.9092 13 6 8.1745 5.3811 0.8792 14 6 7.6579 5.4892 2.2907 15 1 7.0616 4.6922 2.7100 16 6 7.9473 6.6050 3.0472 17 7 8.6737 7.5752 2.5368 18 14 7.3074 6.7386 4.7972 19 1 6.5222 5.5232 5.1312 20 1 8.4524 6.8608 5.7348 21 1 6.4395 7.9376 4.9166 22 6 8.3318 3.8918 -1.0973 23 6 9.4449 3.0887 -1.2607 24 6 10.0105 2.9377 -2.5129 25 6 9.4624 3.5891 -3.6020 26 6 8.3484 4.3911 -3.4389 27 6 7.7841 4.5440 -2.1862 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9337 0.9285 -0.8890 36 1 3.9330 0.9289 0.8909 37 1 2.5894 3.5681 -1.3960 38 1 4.0387 4.5972 -1.3054 39 1 4.1107 3.0307 -2.1479 40 1 5.7725 4.8934 0.0824 41 1 9.2639 5.4191 0.8870 42 1 7.7865 6.2090 0.2858 43 1 8.8771 8.3603 3.0689 44 1 9.8727 2.5792 -0.4099 45 1 10.8804 2.3106 -2.6406 46 1 9.9068 3.4747 -4.5797 47 1 7.9203 4.9004 -4.2897 48 1 6.9144 5.1714 -2.0586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283511786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:37 Heat of formation + Delta-G solvation = -56.036409 kcal Electronic energy + Delta-G solvation = -24928.368341 eV Core-core repulsion = 21560.389414 eV Total energy + Delta-G solvation = -3367.978928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78471 -38.57867 -36.37081 -35.08863 -33.42215 -32.67676 -30.98362 -30.43481 -28.94707 -28.34502 -25.37467 -24.75129 -22.52816 -22.23897 -21.90374 -20.95509 -19.84827 -19.30716 -17.02765 -16.40270 -16.16362 -15.77392 -15.47947 -14.93806 -14.60653 -14.52105 -14.29102 -13.79980 -13.61402 -13.28454 -13.17503 -12.99350 -12.70826 -12.60025 -12.43685 -12.15508 -12.10386 -11.70308 -11.56509 -11.32927 -11.13057 -11.00990 -10.92201 -10.90263 -10.73382 -10.61018 -10.57945 -10.46256 -10.44244 -9.77358 -9.31372 -9.15306 -8.53371 -8.45972 -8.36353 -8.16215 -6.09584 -4.12915 1.79697 1.81655 3.20323 3.25559 3.34213 3.38527 3.78056 4.25475 4.39531 4.70806 4.83845 4.91394 5.09805 5.11833 5.20008 5.27208 5.27925 5.28569 5.38374 5.41627 5.54530 5.59522 5.60459 5.68332 5.73191 5.84071 5.90039 5.92238 5.94435 5.97111 6.02746 6.13333 6.15056 6.21661 6.37242 6.38036 6.44852 6.46819 6.60225 6.85941 6.86726 6.96930 7.13664 7.42011 7.49905 7.63993 7.87414 8.19310 8.26725 8.84441 8.93342 9.52206 11.00997 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008395 B = 0.004931 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3334.573300 B = 5677.360667 C = 8321.172961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.098 4.098 5 C -0.113 4.113 6 H 0.095 0.905 7 C -0.143 4.143 8 C 0.514 3.486 9 O -0.552 6.552 10 N -0.700 5.700 11 C 0.183 3.817 12 H 0.085 0.915 13 C 0.024 3.976 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.069 4.069 23 C -0.109 4.109 24 C -0.123 4.123 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.107 4.107 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.400 0.600 41 H 0.033 0.967 42 H 0.024 0.976 43 H 0.261 0.739 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.097 -8.707 -10.055 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.136 4.136 5 C -0.134 4.134 6 H 0.113 0.887 7 C -0.200 4.200 8 C 0.300 3.700 9 O -0.430 6.430 10 N -0.349 5.349 11 C 0.079 3.921 12 H 0.103 0.897 13 C -0.014 4.014 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.070 4.070 23 C -0.127 4.127 24 C -0.141 4.141 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.126 4.126 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.234 0.766 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.578 -9.272 -9.937 16.627 hybrid contribution -0.414 0.723 0.984 1.289 sum -9.992 -8.549 -8.953 15.909 Atomic orbital electron populations 1.21781 0.96149 1.01339 1.01684 1.21527 0.95486 0.97179 1.02102 1.21695 0.95523 0.96616 1.02031 1.21375 0.94273 0.94599 1.03348 1.21322 0.92957 0.98852 1.00274 0.88693 1.21804 1.01739 1.00429 0.96075 1.20526 0.89497 0.84042 0.75965 1.90641 1.70351 1.31592 1.50430 1.45987 1.07854 1.08149 1.72890 1.20226 0.78374 1.02754 0.90769 0.89655 1.19389 0.97565 0.88873 0.95522 1.21178 1.33013 1.03803 0.97731 0.92344 1.24989 0.95093 0.95797 0.98282 1.69967 1.38058 1.08096 1.36967 0.86549 0.78749 0.77972 0.84843 1.19728 1.20979 1.21019 1.20560 0.95213 0.94872 0.96402 1.21021 0.96173 0.98360 0.97188 1.21037 0.99913 1.00164 0.92980 1.20988 0.97192 0.98858 0.98349 1.21038 0.96813 0.99414 0.97075 1.20898 1.00014 0.99395 0.92269 0.93018 0.92813 0.92884 0.92098 0.92025 0.92034 0.91825 0.91551 0.91214 0.91643 0.92092 0.92290 0.76561 0.94855 0.95781 0.92930 0.86236 0.86644 0.86874 0.86777 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.15 5.93 -26.73 -0.16 -1.31 16 3 C -0.12 -1.19 4.97 -26.73 -0.13 -1.32 16 4 C -0.10 -1.23 4.03 -26.73 -0.11 -1.34 16 5 C -0.11 -1.49 2.72 -91.77 -0.25 -1.74 16 6 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 7 C -0.14 -1.56 8.85 37.16 0.33 -1.23 16 8 C 0.51 9.06 7.11 -10.99 -0.08 8.98 16 9 O -0.55 -11.66 15.58 5.56 0.09 -11.57 16 10 N -0.70 -12.61 3.92 -54.94 -0.22 -12.83 16 11 C 0.18 3.76 2.12 -69.08 -0.15 3.61 16 12 H 0.09 1.93 7.44 -51.93 -0.39 1.55 16 13 C 0.02 0.57 4.49 -27.88 -0.13 0.45 16 14 C -0.52 -13.75 8.84 -34.44 -0.30 -14.06 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 18 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.07 -1.30 4.91 -104.62 -0.51 -1.81 16 23 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 16 24 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 25 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 26 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 27 C -0.11 -1.81 9.32 -39.58 -0.37 -2.18 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 37 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 38 H 0.06 0.64 7.56 -51.93 -0.39 0.25 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.40 6.63 8.02 -40.82 -0.33 6.30 16 41 H 0.03 0.88 8.14 -51.92 -0.42 0.45 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 45 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 46 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 47 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 48 H 0.12 1.82 7.72 -52.49 -0.41 1.42 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -30.66 391.78 -10.16 -40.82 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.49 Total: 6.98 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -3.16 Total: -20.45 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.52 Total: -37.68 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.66 -10.16 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283511786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.213 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds