Wall clock time and date at job start Tue Mar 31 2020 08:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 112.90725 * 2 1 4 4 C 1.54053 * 113.69868 * 228.67269 * 2 1 3 5 5 H 1.09005 * 113.60880 * 334.59977 * 4 2 1 6 6 N 1.46903 * 113.69542 * 105.49001 * 4 2 1 7 7 C 1.46902 * 110.99981 * 202.03662 * 6 4 2 8 8 C 1.53000 * 109.47299 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47128 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46803 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00524 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00087 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99723 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00267 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46803 * 60.00413 * 14 12 10 16 16 H 1.48501 * 109.46832 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47041 * 299.99977 * 14 12 10 18 18 C 1.53773 * 87.07787 * 220.05144 * 4 2 1 19 19 C 1.53780 * 87.08511 * 25.42898 * 18 4 2 20 20 H 1.09004 * 113.61668 * 219.93929 * 19 18 4 21 21 O 1.42897 * 113.61735 * 89.10982 * 19 18 4 22 22 C 1.35904 * 116.99512 * 87.21007 * 21 19 18 23 23 C 1.38734 * 120.05426 * 174.99666 * 22 21 19 24 24 C 1.38145 * 119.94292 * 179.74445 * 23 22 21 25 25 C 1.38271 * 120.05612 * 0.25372 * 24 23 22 26 26 C 1.38268 * 120.11062 * 359.97438 * 25 24 23 27 27 C 1.38142 * 120.05303 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47342 * 308.25999 * 1 2 3 29 29 H 1.09008 * 109.47238 * 68.25433 * 1 2 3 30 30 H 1.08997 * 109.46893 * 188.25526 * 1 2 3 31 31 H 1.08996 * 109.47221 * 171.75154 * 3 2 1 32 32 H 1.09006 * 109.47119 * 291.74222 * 3 2 1 33 33 H 1.08994 * 109.47385 * 51.74274 * 3 2 1 34 34 H 1.00890 * 111.00155 * 325.99756 * 6 4 2 35 35 H 1.09002 * 109.47572 * 300.00954 * 7 6 4 36 36 H 1.09007 * 109.46760 * 60.00204 * 7 6 4 37 37 H 1.08998 * 109.47049 * 300.00883 * 8 7 6 38 38 H 1.09004 * 109.46614 * 60.00398 * 8 7 6 39 39 H 1.08992 * 109.47003 * 300.00066 * 9 8 7 40 40 H 1.08995 * 109.47065 * 60.00434 * 9 8 7 41 41 H 0.96997 * 119.99876 * 180.02562 * 13 12 10 42 42 H 1.09004 * 113.61749 * 270.87691 * 18 4 2 43 43 H 1.09000 * 113.61544 * 139.97739 * 18 4 2 44 44 H 1.07999 * 120.02842 * 0.02562 * 23 22 21 45 45 H 1.08001 * 119.96857 * 180.27420 * 24 23 22 46 46 H 1.07997 * 119.94210 * 179.97438 * 25 24 23 47 47 H 1.07996 * 119.96803 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.02392 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1491 -0.9315 -1.0593 5 1 1.4984 -1.7567 -1.3489 6 7 2.7154 -0.2197 -2.2129 7 6 2.8072 -1.1028 -3.3832 8 6 3.4006 -0.3280 -4.5615 9 6 3.4956 -1.2477 -5.7806 10 6 4.0807 -0.4846 -6.9409 11 1 4.3576 0.5524 -6.8209 12 6 4.2626 -1.1104 -8.1560 13 7 3.9251 -2.3730 -8.3024 14 14 4.9872 -0.1644 -9.5946 15 1 6.3436 0.3214 -9.2346 16 1 5.0784 -1.0567 -10.7781 17 1 4.1152 0.9941 -9.9147 18 6 3.1940 -1.3142 0.0020 19 6 2.1460 -0.9290 1.0594 20 1 2.5637 -0.3988 1.9153 21 8 1.2918 -2.0099 1.4391 22 6 1.7259 -2.8156 2.4437 23 6 0.9035 -3.8198 2.9336 24 6 1.3491 -4.6409 3.9512 25 6 2.6116 -4.4593 4.4851 26 6 3.4314 -3.4562 4.0018 27 6 2.9904 -2.6325 2.9843 28 1 -0.3634 0.6363 0.8069 29 1 -0.3634 0.3808 -0.9546 30 1 -0.3633 -1.0170 0.1476 31 1 3.2037 1.3482 0.1474 32 1 1.9163 1.8923 -0.9546 33 1 1.6808 1.9918 0.8069 34 1 2.1793 0.6081 -2.4256 35 1 3.4480 -1.9526 -3.1478 36 1 1.8119 -1.4605 -3.6473 37 1 2.7601 0.5220 -4.7969 38 1 4.3959 0.0293 -4.2970 39 1 4.1359 -2.0978 -5.5453 40 1 2.5002 -1.6046 -6.0449 41 1 4.0534 -2.8134 -9.1571 42 1 4.0725 -0.6688 0.0025 43 1 3.4466 -2.3745 0.0036 44 1 -0.0825 -3.9624 2.5166 45 1 0.7109 -5.4256 4.3298 46 1 2.9579 -5.1020 5.2808 47 1 4.4172 -3.3166 4.4201 48 1 3.6312 -1.8493 2.6068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284299624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:45 Heat of formation + Delta-G solvation = -8.032803 kcal Electronic energy + Delta-G solvation = -24286.055599 eV Core-core repulsion = 20920.158264 eV Total energy + Delta-G solvation = -3365.897335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08464 -39.28666 -36.97677 -35.17676 -33.01303 -31.34361 -30.92238 -30.40047 -29.83852 -27.55121 -26.38602 -24.38296 -23.01380 -22.75275 -22.01355 -21.71671 -20.19437 -18.80449 -17.89159 -16.54570 -16.28568 -16.07483 -15.77660 -15.20986 -15.03630 -14.75989 -14.50418 -14.31421 -14.12063 -13.68165 -13.33977 -13.20928 -12.91010 -12.52297 -12.44434 -12.33846 -12.16537 -11.96181 -11.80902 -11.74792 -11.45553 -11.24935 -11.05701 -10.98269 -10.78746 -10.56408 -10.54082 -10.20446 -10.11859 -9.66836 -9.28704 -9.25017 -9.02479 -8.40688 -8.31843 -8.16142 -5.97010 -3.99195 1.09117 1.21075 2.86773 3.35176 3.39216 3.41909 3.54969 4.18306 4.24861 4.36481 4.49769 4.58551 4.66406 4.69745 4.86797 4.90701 5.00021 5.03718 5.13595 5.28610 5.38255 5.38535 5.45148 5.52957 5.54763 5.70836 5.74411 5.75815 5.81550 5.85043 5.90249 5.97037 6.03572 6.09471 6.15402 6.24184 6.26330 6.28229 6.35858 6.56750 6.74916 6.81524 7.16439 7.26014 7.39385 7.64477 7.71293 7.86796 8.03543 8.46609 9.07908 9.64534 11.14433 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.002362 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.667251 B =11849.178258 C =12491.917072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 C -0.121 4.121 4 C 0.074 3.926 5 H 0.074 0.926 6 N -0.676 5.676 7 C 0.058 3.942 8 C -0.106 4.106 9 C 0.022 3.978 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.148 4.148 19 C 0.065 3.935 20 H 0.082 0.918 21 O -0.292 6.292 22 C 0.135 3.865 23 C -0.156 4.156 24 C -0.083 4.083 25 C -0.163 4.163 26 C -0.081 4.081 27 C -0.205 4.205 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.338 0.662 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 0.792 27.368 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.075 4.075 3 C -0.179 4.179 4 C -0.036 4.036 5 H 0.092 0.908 6 N -0.308 5.308 7 C -0.070 4.070 8 C -0.144 4.144 9 C -0.016 4.016 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.187 4.187 19 C 0.008 3.992 20 H 0.100 0.900 21 O -0.205 6.205 22 C 0.090 3.910 23 C -0.174 4.174 24 C -0.101 4.101 25 C -0.182 4.182 26 C -0.100 4.100 27 C -0.224 4.224 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.330 0.542 27.287 27.808 hybrid contribution -0.291 0.299 -1.113 1.189 sum -5.621 0.841 26.174 26.784 Atomic orbital electron populations 1.21656 0.93515 1.02640 1.01616 1.22283 0.96115 0.94904 0.94149 1.21477 1.01175 0.92903 1.02301 1.23086 0.94688 0.95785 0.90054 0.90815 1.60730 1.55406 1.08909 1.05711 1.22171 0.98985 0.96001 0.89866 1.21615 0.99700 0.98713 0.94378 1.19057 0.96953 0.94563 0.90978 1.21221 1.41361 0.97454 0.95688 0.92741 1.25038 0.95767 0.94922 0.98839 1.69961 1.48278 1.10487 1.24899 0.86652 0.79732 0.79721 0.81861 1.20224 1.21323 1.20279 1.23637 0.97853 1.02325 0.94859 1.23382 0.92199 0.87316 0.96312 0.89995 1.86045 1.45621 1.39647 1.49170 1.19055 0.92692 0.91219 0.88075 1.20462 1.00499 0.96747 0.99729 1.20959 0.95942 0.98000 0.95164 1.21055 0.94988 0.99978 1.02136 1.20975 0.99340 0.94296 0.95348 1.21340 0.96273 1.03612 1.01154 0.92550 0.92439 0.91526 0.91487 0.91147 0.92540 0.84253 0.91588 0.95785 0.93738 0.92606 0.96625 0.96853 0.92992 0.87960 0.91030 0.85337 0.85523 0.86080 0.85902 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.00 37.15 0.33 -1.03 16 2 C -0.07 -0.75 1.27 -153.55 -0.19 -0.95 16 3 C -0.12 -1.09 8.40 37.16 0.31 -0.78 16 4 C 0.07 0.93 3.50 -66.76 -0.23 0.70 16 5 H 0.07 1.04 7.86 -51.93 -0.41 0.63 16 6 N -0.68 -9.65 6.01 -105.71 -0.64 -10.28 16 7 C 0.06 1.03 5.55 -3.82 -0.02 1.01 16 8 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 14 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C -0.15 -1.70 6.91 -25.92 -0.18 -1.88 16 19 C 0.06 0.67 2.68 -25.92 -0.07 0.60 16 20 H 0.08 0.75 7.00 -51.93 -0.36 0.38 16 21 O -0.29 -3.38 8.65 -19.44 -0.17 -3.54 16 22 C 0.14 1.49 6.68 -39.22 -0.26 1.22 16 23 C -0.16 -1.55 9.99 -39.43 -0.39 -1.94 16 24 C -0.08 -0.70 10.04 -39.60 -0.40 -1.09 16 25 C -0.16 -1.34 10.04 -39.56 -0.40 -1.74 16 26 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 27 C -0.21 -2.03 8.95 -39.43 -0.35 -2.38 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.07 0.72 7.07 -51.93 -0.37 0.36 16 31 H 0.07 0.61 7.32 -51.93 -0.38 0.23 16 32 H 0.07 0.65 6.95 -51.93 -0.36 0.28 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.34 4.52 7.17 -39.30 -0.28 4.24 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.43 8.13 -51.92 -0.42 0.01 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.10 1.14 7.63 -51.93 -0.40 0.75 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.13 1.15 6.02 -52.48 -0.32 0.84 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -30.97 383.52 -10.59 -41.56 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.33 Total: 1.31 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -2.95 Total: -25.07 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.10 Total: -36.99 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: -0.17 Total: -3.54 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.97 -10.59 -41.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284299624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.530 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds