Wall clock time and date at job start Tue Mar 31 2020 08:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 112.90725 * 2 1 4 4 C 1.54053 * 113.69868 * 228.67269 * 2 1 3 5 5 H 1.09005 * 113.60880 * 334.59977 * 4 2 1 6 6 N 1.46903 * 113.69542 * 105.49001 * 4 2 1 7 7 C 1.46902 * 110.99981 * 202.03662 * 6 4 2 8 8 C 1.53000 * 109.47299 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47128 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46803 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00524 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00087 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99723 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00267 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46803 * 60.00413 * 14 12 10 16 16 H 1.48501 * 109.46832 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47041 * 299.99977 * 14 12 10 18 18 C 1.53773 * 87.07787 * 220.05144 * 4 2 1 19 19 C 1.53780 * 87.08511 * 25.42898 * 18 4 2 20 20 H 1.09004 * 113.61668 * 219.93929 * 19 18 4 21 21 O 1.42897 * 113.61735 * 89.10982 * 19 18 4 22 22 C 1.35904 * 116.99512 * 87.21007 * 21 19 18 23 23 C 1.38734 * 120.05426 * 174.99666 * 22 21 19 24 24 C 1.38145 * 119.94292 * 179.74445 * 23 22 21 25 25 C 1.38271 * 120.05612 * 0.25372 * 24 23 22 26 26 C 1.38268 * 120.11062 * 359.97438 * 25 24 23 27 27 C 1.38142 * 120.05303 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47342 * 308.25999 * 1 2 3 29 29 H 1.09008 * 109.47238 * 68.25433 * 1 2 3 30 30 H 1.08997 * 109.46893 * 188.25526 * 1 2 3 31 31 H 1.08996 * 109.47221 * 171.75154 * 3 2 1 32 32 H 1.09006 * 109.47119 * 291.74222 * 3 2 1 33 33 H 1.08994 * 109.47385 * 51.74274 * 3 2 1 34 34 H 1.00890 * 111.00155 * 325.99756 * 6 4 2 35 35 H 1.09002 * 109.47572 * 300.00954 * 7 6 4 36 36 H 1.09007 * 109.46760 * 60.00204 * 7 6 4 37 37 H 1.08998 * 109.47049 * 300.00883 * 8 7 6 38 38 H 1.09004 * 109.46614 * 60.00398 * 8 7 6 39 39 H 1.08992 * 109.47003 * 300.00066 * 9 8 7 40 40 H 1.08995 * 109.47065 * 60.00434 * 9 8 7 41 41 H 0.96997 * 119.99876 * 180.02562 * 13 12 10 42 42 H 1.09004 * 113.61749 * 270.87691 * 18 4 2 43 43 H 1.09000 * 113.61544 * 139.97739 * 18 4 2 44 44 H 1.07999 * 120.02842 * 0.02562 * 23 22 21 45 45 H 1.08001 * 119.96857 * 180.27420 * 24 23 22 46 46 H 1.07997 * 119.94210 * 179.97438 * 25 24 23 47 47 H 1.07996 * 119.96803 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.02392 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1491 -0.9315 -1.0593 5 1 1.4984 -1.7567 -1.3489 6 7 2.7154 -0.2197 -2.2129 7 6 2.8072 -1.1028 -3.3832 8 6 3.4006 -0.3280 -4.5615 9 6 3.4956 -1.2477 -5.7806 10 6 4.0807 -0.4846 -6.9409 11 1 4.3576 0.5524 -6.8209 12 6 4.2626 -1.1104 -8.1560 13 7 3.9251 -2.3730 -8.3024 14 14 4.9872 -0.1644 -9.5946 15 1 6.3436 0.3214 -9.2346 16 1 5.0784 -1.0567 -10.7781 17 1 4.1152 0.9941 -9.9147 18 6 3.1940 -1.3142 0.0020 19 6 2.1460 -0.9290 1.0594 20 1 2.5637 -0.3988 1.9153 21 8 1.2918 -2.0099 1.4391 22 6 1.7259 -2.8156 2.4437 23 6 0.9035 -3.8198 2.9336 24 6 1.3491 -4.6409 3.9512 25 6 2.6116 -4.4593 4.4851 26 6 3.4314 -3.4562 4.0018 27 6 2.9904 -2.6325 2.9843 28 1 -0.3634 0.6363 0.8069 29 1 -0.3634 0.3808 -0.9546 30 1 -0.3633 -1.0170 0.1476 31 1 3.2037 1.3482 0.1474 32 1 1.9163 1.8923 -0.9546 33 1 1.6808 1.9918 0.8069 34 1 2.1793 0.6081 -2.4256 35 1 3.4480 -1.9526 -3.1478 36 1 1.8119 -1.4605 -3.6473 37 1 2.7601 0.5220 -4.7969 38 1 4.3959 0.0293 -4.2970 39 1 4.1359 -2.0978 -5.5453 40 1 2.5002 -1.6046 -6.0449 41 1 4.0534 -2.8134 -9.1571 42 1 4.0725 -0.6688 0.0025 43 1 3.4466 -2.3745 0.0036 44 1 -0.0825 -3.9624 2.5166 45 1 0.7109 -5.4256 4.3298 46 1 2.9579 -5.1020 5.2808 47 1 4.4172 -3.3166 4.4201 48 1 3.6312 -1.8493 2.6068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284299624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:44 Heat of formation + Delta-G solvation = -24.351772 kcal Electronic energy + Delta-G solvation = -24286.763243 eV Core-core repulsion = 20920.158264 eV Total energy + Delta-G solvation = -3366.604979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92902 -40.06839 -37.86183 -36.69151 -34.93818 -32.54493 -32.04371 -31.33435 -30.63928 -28.31539 -28.17614 -25.56587 -24.29351 -23.67360 -22.92633 -22.69418 -21.97830 -19.62611 -18.74603 -18.48537 -17.45363 -16.81247 -16.66240 -16.58091 -16.28711 -16.09360 -15.53363 -15.40586 -15.15304 -14.55641 -14.41451 -14.29638 -14.03665 -13.79955 -13.75213 -13.40803 -13.19030 -13.09828 -12.96552 -12.82821 -12.63189 -12.47575 -12.43873 -12.33971 -12.06778 -11.89753 -11.77402 -11.53389 -11.43799 -11.27188 -11.05731 -10.81675 -10.55850 -9.93475 -9.40018 -9.13518 -8.20611 -6.32163 0.40999 0.50763 1.39493 1.43178 1.51071 2.09857 2.40639 2.85917 3.12257 3.20066 3.33437 3.39646 3.72201 3.93746 3.97665 4.02429 4.19807 4.21165 4.23258 4.31644 4.38202 4.49005 4.52374 4.56755 4.68907 4.70188 4.73627 4.79101 4.89443 4.92085 4.97524 5.01038 5.08002 5.10283 5.13730 5.18687 5.23601 5.34561 5.44030 5.47749 5.50827 5.52517 5.61851 5.73649 5.84729 5.90410 6.07957 6.25974 6.48082 6.50152 6.84853 7.37158 8.91298 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.002362 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.667251 B =11849.178258 C =12491.917072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.065 3.935 5 H 0.054 0.946 6 N -0.667 5.667 7 C 0.073 3.927 8 C -0.090 4.090 9 C 0.025 3.975 10 C -0.543 4.543 11 H 0.062 0.938 12 C -0.004 4.004 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.265 1.265 18 C -0.145 4.145 19 C 0.072 3.928 20 H 0.099 0.901 21 O -0.307 6.307 22 C 0.110 3.890 23 C -0.173 4.173 24 C -0.085 4.085 25 C -0.165 4.165 26 C -0.088 4.088 27 C -0.216 4.216 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.346 0.654 35 H 0.054 0.946 36 H 0.017 0.983 37 H 0.052 0.948 38 H 0.055 0.945 39 H -0.012 1.012 40 H -0.012 1.012 41 H 0.264 0.736 42 H 0.109 0.891 43 H 0.057 0.943 44 H 0.130 0.870 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.144 0.856 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.283 2.203 28.721 29.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.064 4.064 3 C -0.177 4.177 4 C -0.046 4.046 5 H 0.072 0.928 6 N -0.299 5.299 7 C -0.057 4.057 8 C -0.128 4.128 9 C -0.013 4.013 10 C -0.581 4.581 11 H 0.080 0.920 12 C -0.201 4.201 13 N -0.576 5.576 14 Si 0.792 3.208 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.183 4.183 19 C 0.015 3.985 20 H 0.117 0.883 21 O -0.221 6.221 22 C 0.065 3.935 23 C -0.192 4.192 24 C -0.103 4.103 25 C -0.183 4.183 26 C -0.106 4.106 27 C -0.234 4.234 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.166 0.834 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.007 0.993 40 H 0.006 0.994 41 H 0.072 0.928 42 H 0.127 0.873 43 H 0.075 0.925 44 H 0.148 0.852 45 H 0.168 0.832 46 H 0.164 0.836 47 H 0.162 0.838 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.825 1.963 28.664 29.134 hybrid contribution -0.469 -0.229 -1.470 1.560 sum -5.293 1.735 27.194 27.758 Atomic orbital electron populations 1.21633 0.93255 1.02147 1.02186 1.22261 0.96288 0.95280 0.92533 1.21496 1.01241 0.91911 1.03029 1.23147 0.95402 0.96104 0.89900 0.92769 1.60665 1.56010 1.08572 1.04665 1.21846 0.98033 0.95695 0.90108 1.21354 1.00153 0.97944 0.93306 1.18970 0.94652 0.94601 0.93078 1.21674 1.41628 0.98036 0.96750 0.92019 1.26041 0.96031 0.95903 1.02143 1.70104 1.49317 1.12310 1.25853 0.85463 0.79255 0.78380 0.77733 1.19067 1.20859 1.19021 1.23604 0.98148 1.01570 0.94999 1.23341 0.91503 0.87091 0.96537 0.88333 1.86023 1.46123 1.40180 1.49727 1.19324 0.93625 0.91912 0.88603 1.20695 1.00788 0.97148 1.00528 1.21294 0.96519 0.98045 0.94453 1.21425 0.94704 0.99878 1.02330 1.21311 1.00391 0.94019 0.94906 1.21495 0.96018 1.04246 1.01675 0.91081 0.92415 0.92878 0.91438 0.91195 0.90700 0.83401 0.92714 0.96454 0.92889 0.92629 0.99325 0.99350 0.92775 0.87302 0.92457 0.85203 0.83199 0.83645 0.83820 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.00 71.98 0.65 -1.92 16 2 C -0.06 -1.22 1.27 -51.56 -0.07 -1.28 16 3 C -0.12 -1.89 8.40 71.98 0.60 -1.29 16 4 C 0.06 1.63 3.50 45.53 0.16 1.79 16 5 H 0.05 1.59 7.86 -2.38 -0.02 1.58 16 6 N -0.67 -18.79 6.01 -488.36 -2.94 -21.73 16 7 C 0.07 2.61 5.55 86.30 0.48 3.08 16 8 C -0.09 -3.79 5.41 30.59 0.17 -3.62 16 9 C 0.02 1.35 4.97 29.85 0.15 1.49 16 10 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 11 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 12 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 13 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 14 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C -0.14 -3.29 6.91 31.12 0.22 -3.08 16 19 C 0.07 1.43 2.68 31.12 0.08 1.51 16 20 H 0.10 1.64 7.00 -2.38 -0.02 1.62 16 21 O -0.31 -7.15 8.65 -92.47 -0.80 -7.95 16 22 C 0.11 2.42 6.68 22.51 0.15 2.57 16 23 C -0.17 -3.41 9.99 22.37 0.22 -3.19 16 24 C -0.09 -1.32 10.04 22.26 0.22 -1.10 16 25 C -0.17 -2.39 10.04 22.28 0.22 -2.17 16 26 C -0.09 -1.40 10.04 22.25 0.22 -1.17 16 27 C -0.22 -4.11 8.95 22.36 0.20 -3.91 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.05 1.15 7.07 -2.39 -0.02 1.14 16 31 H 0.07 1.08 7.32 -2.39 -0.02 1.06 16 32 H 0.07 1.13 6.95 -2.38 -0.02 1.11 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.35 8.87 7.17 -89.70 -0.64 8.22 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.02 0.64 8.13 -2.38 -0.02 0.62 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 39 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.11 2.33 7.63 -2.38 -0.02 2.31 16 43 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 45 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 46 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 47 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 48 H 0.13 2.28 6.02 -2.91 -0.02 2.27 16 Total: -1.00 -67.46 383.52 3.23 -64.24 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.27 Total: 19.99 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 4.38 Total: -43.48 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.65 Total: -79.77 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.80 Total: -7.95 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.46 3.23 -64.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284299624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.887 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds