Wall clock time and date at job start Tue Mar 31 2020 08:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46716 * 2 1 4 4 C 1.50705 * 109.46634 * 182.56869 * 3 2 1 5 5 C 1.38135 * 120.03542 * 298.36549 * 4 3 2 6 6 C 1.38263 * 120.06682 * 180.02562 * 5 4 3 7 7 C 1.38298 * 120.14522 * 359.94936 * 6 5 4 8 8 C 1.38089 * 120.07150 * 0.02950 * 7 6 5 9 9 C 1.50704 * 120.03765 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.46792 * 300.01765 * 9 8 7 11 11 C 1.52999 * 109.46911 * 60.01887 * 9 8 7 12 12 C 1.38851 * 120.03543 * 118.34509 * 4 3 2 13 13 N 1.39929 * 120.07176 * 0.27275 * 12 4 3 14 14 C 1.34780 * 119.99795 * 312.03050 * 13 12 4 15 15 O 1.21281 * 119.99836 * 358.00803 * 14 13 12 16 16 C 1.50701 * 119.99904 * 178.01072 * 14 13 12 17 17 C 1.52992 * 109.47188 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47188 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99980 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99755 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99635 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00502 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47222 * 89.99962 * 22 20 18 24 24 H 1.48495 * 109.47350 * 210.00474 * 22 20 18 25 25 H 1.48510 * 109.47027 * 330.00412 * 22 20 18 26 26 H 1.09001 * 109.46670 * 60.00424 * 1 2 3 27 27 H 1.09005 * 109.46893 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47161 * 300.00177 * 1 2 3 29 29 H 1.08997 * 109.47161 * 239.99823 * 2 1 3 30 30 H 1.09001 * 109.46670 * 119.99576 * 2 1 3 31 31 H 1.08998 * 109.47669 * 62.57330 * 3 2 1 32 32 H 1.08997 * 109.47578 * 302.56357 * 3 2 1 33 33 H 1.07999 * 119.96463 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.92582 * 179.97438 * 6 5 4 35 35 H 1.08003 * 119.96768 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.46992 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.46748 * 60.00107 * 10 9 8 38 38 H 1.08998 * 109.46655 * 179.97438 * 10 9 8 39 39 H 1.08996 * 109.47113 * 300.00310 * 10 9 8 40 40 H 1.08998 * 109.46566 * 180.02562 * 11 9 8 41 41 H 1.08989 * 109.47234 * 299.99916 * 11 9 8 42 42 H 1.08997 * 109.47107 * 60.00587 * 11 9 8 43 43 H 0.96998 * 119.99987 * 132.02078 * 13 12 4 44 44 H 1.09005 * 109.47123 * 299.99834 * 16 14 13 45 45 H 1.08997 * 109.47122 * 59.99478 * 16 14 13 46 46 H 1.09005 * 109.47223 * 300.00103 * 17 16 14 47 47 H 1.09005 * 109.47029 * 59.99646 * 17 16 14 48 48 H 0.96998 * 119.99979 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5456 1.4430 -0.0637 5 6 4.2807 0.8594 0.9498 6 6 5.6621 0.8599 0.8923 7 6 6.3124 1.4433 -0.1798 8 6 5.5834 2.0280 -1.1964 9 6 6.2928 2.6640 -2.3640 10 6 7.1944 3.7926 -1.8596 11 6 7.1436 1.6120 -3.0783 12 6 4.1955 2.0296 -1.1414 13 7 3.4540 2.6263 -2.1671 14 6 2.4131 1.9692 -2.7161 15 8 2.1415 0.8465 -2.3463 16 6 1.5868 2.6295 -3.7896 17 6 0.4779 1.6759 -4.2386 18 6 -0.3488 2.3364 -5.3116 19 1 -0.1076 3.3365 -5.6401 20 6 -1.4136 1.6642 -5.8731 21 7 -2.1354 2.2409 -6.8092 22 14 -1.8312 -0.0654 -5.3045 23 1 -2.7915 0.0036 -4.1738 24 1 -2.4418 -0.8217 -6.4271 25 1 -0.5922 -0.7531 -4.8602 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7148 1.9429 0.9121 32 1 1.6396 1.9695 -0.8661 33 1 3.7758 0.4030 1.7884 34 1 6.2346 0.4033 1.6862 35 1 7.3916 1.4417 -0.2220 36 1 5.5573 3.0696 -3.0589 37 1 7.9298 3.3870 -1.1647 38 1 7.7078 4.2523 -2.7041 39 1 6.5882 4.5419 -1.3507 40 1 7.6570 2.0722 -3.9225 41 1 7.8790 1.2065 -2.3835 42 1 6.5013 0.8081 -3.4376 43 1 3.6889 3.5128 -2.4829 44 1 1.1428 3.5437 -3.3956 45 1 2.2234 2.8722 -4.6404 46 1 0.9222 0.7618 -4.6327 47 1 -0.1588 1.4328 -3.3878 48 1 -2.8843 1.7679 -7.2045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292279731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:31 Heat of formation + Delta-G solvation = -31.721485 kcal Electronic energy + Delta-G solvation = -25725.672106 eV Core-core repulsion = 22358.747552 eV Total energy + Delta-G solvation = -3366.924553 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91221 -38.64463 -36.13131 -34.51761 -34.11622 -33.48629 -31.40010 -30.23508 -29.28139 -27.30222 -26.51376 -25.88685 -23.46710 -22.54924 -21.23250 -20.84044 -19.76635 -19.32598 -17.67841 -17.25797 -16.54944 -15.81247 -15.60548 -14.92256 -14.32430 -14.26976 -14.07096 -14.02171 -13.82859 -13.64010 -13.40403 -13.07254 -12.72658 -12.60949 -12.56997 -12.38215 -12.16001 -11.88377 -11.49171 -11.46464 -11.32040 -11.14077 -11.01577 -10.84843 -10.74506 -10.50098 -10.25616 -10.15087 -10.03999 -9.83898 -9.76736 -9.25306 -9.19719 -8.54519 -8.53312 -8.06470 -6.05407 -4.04384 1.31707 1.39541 3.00739 3.35214 3.35934 3.42716 3.52534 3.76053 4.48284 4.49984 4.65217 4.93835 5.02339 5.04126 5.14894 5.23047 5.28725 5.30154 5.41841 5.44693 5.45886 5.48627 5.60415 5.65691 5.71884 5.78706 5.82642 5.91398 5.98501 6.00889 6.03596 6.07357 6.09750 6.12199 6.15559 6.37764 6.45304 6.50467 6.56394 6.62538 6.64484 6.73402 6.82948 7.13891 7.32201 7.39381 7.63017 7.76205 8.47021 8.60056 8.97577 9.57475 11.07459 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.004392 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.094166 B = 6374.322967 C = 7652.353782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.078 4.078 4 C -0.069 4.069 5 C -0.110 4.110 6 C -0.130 4.130 7 C -0.110 4.110 8 C -0.094 4.094 9 C -0.057 4.057 10 C -0.143 4.143 11 C -0.141 4.141 12 C 0.153 3.847 13 N -0.687 5.687 14 C 0.503 3.497 15 O -0.506 6.506 16 C -0.122 4.122 17 C 0.004 3.996 18 C -0.526 4.526 19 H 0.072 0.928 20 C 0.070 3.930 21 N -0.903 5.903 22 Si 0.876 3.124 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.261 1.261 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.406 0.594 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.024 0.976 47 H 0.019 0.981 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.233 0.920 14.975 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.115 4.115 4 C -0.071 4.071 5 C -0.129 4.129 6 C -0.149 4.149 7 C -0.129 4.129 8 C -0.096 4.096 9 C -0.075 4.075 10 C -0.200 4.200 11 C -0.198 4.198 12 C 0.060 3.940 13 N -0.336 5.336 14 C 0.294 3.706 15 O -0.380 6.380 16 C -0.162 4.162 17 C -0.034 4.034 18 C -0.564 4.564 19 H 0.090 0.910 20 C -0.131 4.131 21 N -0.542 5.542 22 Si 0.703 3.297 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.185 1.185 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.243 0.757 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.042 0.958 47 H 0.038 0.962 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.808 0.084 15.058 23.321 hybrid contribution -0.179 -0.424 0.096 0.470 sum 17.629 -0.340 15.154 23.249 Atomic orbital electron populations 1.21734 0.96167 1.01168 1.01540 1.21439 0.95375 0.95669 1.01863 1.20797 0.90113 0.98656 1.01952 1.19888 0.96426 0.98412 0.92340 1.20844 0.93713 0.99805 0.98503 1.21018 0.94403 1.00859 0.98625 1.20707 0.99317 0.98930 0.93898 1.19735 0.91766 1.01081 0.97014 1.20050 0.97272 0.95662 0.94535 1.21860 0.99299 0.97735 1.01092 1.21815 0.99457 0.98622 0.99955 1.17405 0.89538 0.98464 0.88643 1.43819 1.32248 1.20544 1.36955 1.21642 0.79439 0.86863 0.82679 1.90710 1.67996 1.18689 1.60605 1.21700 0.98074 1.01071 0.95305 1.19354 0.92675 0.94708 0.96624 1.21096 1.12640 1.02998 1.19618 0.90966 1.24957 0.95762 0.97889 0.94501 1.69909 1.19341 1.37990 1.26927 0.86822 0.79369 0.85206 0.78335 1.20205 1.21474 1.18487 0.92060 0.93274 0.93755 0.89619 0.93699 0.92592 0.90085 0.86158 0.86359 0.86230 0.90439 0.92512 0.92372 0.92602 0.92403 0.92596 0.92434 0.75723 0.89530 0.89486 0.95792 0.96227 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.11 -1.64 5.02 -26.73 -0.13 -1.77 16 3 C -0.08 -1.17 4.49 -27.88 -0.13 -1.30 16 4 C -0.07 -0.97 4.92 -104.43 -0.51 -1.49 16 5 C -0.11 -1.35 9.27 -39.61 -0.37 -1.72 16 6 C -0.13 -1.41 10.04 -39.55 -0.40 -1.80 16 7 C -0.11 -1.18 8.71 -39.61 -0.35 -1.52 16 8 C -0.09 -1.10 4.80 -104.43 -0.50 -1.60 16 9 C -0.06 -0.56 3.03 -91.77 -0.28 -0.83 16 10 C -0.14 -1.13 9.01 37.16 0.33 -0.80 16 11 C -0.14 -1.35 9.01 37.16 0.33 -1.01 16 12 C 0.15 2.11 5.96 -83.69 -0.50 1.61 16 13 N -0.69 -9.31 4.28 -9.86 -0.04 -9.35 16 14 C 0.50 8.59 5.80 -10.98 -0.06 8.53 16 15 O -0.51 -10.03 10.31 5.56 0.06 -9.98 16 16 C -0.12 -2.24 5.64 -27.89 -0.16 -2.39 16 17 C 0.00 0.10 3.33 -27.89 -0.09 0.01 16 18 C -0.53 -14.71 9.66 -34.44 -0.33 -15.05 16 19 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 22 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.56 6.14 -51.93 -0.32 1.24 16 30 H 0.04 0.61 7.58 -51.93 -0.39 0.21 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.36 4.43 -51.93 -0.23 1.13 16 33 H 0.12 1.29 7.70 -52.49 -0.40 0.89 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.03 7.10 -52.48 -0.37 0.66 16 36 H 0.08 0.78 6.37 -51.93 -0.33 0.45 16 37 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.48 7.39 -51.94 -0.38 0.10 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.41 4.35 7.89 -40.82 -0.32 4.03 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 47 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -32.00 373.28 -9.26 -41.26 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -8.14 Total: 2.88 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -2.87 Total: -21.08 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.73 Total: -36.31 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.06 Total: -9.98 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.00 -9.26 -41.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292279731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.536 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds