Wall clock time and date at job start Tue Mar 31 2020 08:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46716 * 2 1 4 4 C 1.50705 * 109.46634 * 182.56869 * 3 2 1 5 5 C 1.38135 * 120.03542 * 298.36549 * 4 3 2 6 6 C 1.38263 * 120.06682 * 180.02562 * 5 4 3 7 7 C 1.38298 * 120.14522 * 359.94936 * 6 5 4 8 8 C 1.38089 * 120.07150 * 0.02950 * 7 6 5 9 9 C 1.50704 * 120.03765 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.46792 * 300.01765 * 9 8 7 11 11 C 1.52999 * 109.46911 * 60.01887 * 9 8 7 12 12 C 1.38851 * 120.03543 * 118.34509 * 4 3 2 13 13 N 1.39929 * 120.07176 * 0.27275 * 12 4 3 14 14 C 1.34780 * 119.99795 * 312.03050 * 13 12 4 15 15 O 1.21281 * 119.99836 * 358.00803 * 14 13 12 16 16 C 1.50701 * 119.99904 * 178.01072 * 14 13 12 17 17 C 1.52992 * 109.47188 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47188 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99980 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99755 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99635 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00502 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47222 * 89.99962 * 22 20 18 24 24 H 1.48495 * 109.47350 * 210.00474 * 22 20 18 25 25 H 1.48510 * 109.47027 * 330.00412 * 22 20 18 26 26 H 1.09001 * 109.46670 * 60.00424 * 1 2 3 27 27 H 1.09005 * 109.46893 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47161 * 300.00177 * 1 2 3 29 29 H 1.08997 * 109.47161 * 239.99823 * 2 1 3 30 30 H 1.09001 * 109.46670 * 119.99576 * 2 1 3 31 31 H 1.08998 * 109.47669 * 62.57330 * 3 2 1 32 32 H 1.08997 * 109.47578 * 302.56357 * 3 2 1 33 33 H 1.07999 * 119.96463 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.92582 * 179.97438 * 6 5 4 35 35 H 1.08003 * 119.96768 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.46992 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.46748 * 60.00107 * 10 9 8 38 38 H 1.08998 * 109.46655 * 179.97438 * 10 9 8 39 39 H 1.08996 * 109.47113 * 300.00310 * 10 9 8 40 40 H 1.08998 * 109.46566 * 180.02562 * 11 9 8 41 41 H 1.08989 * 109.47234 * 299.99916 * 11 9 8 42 42 H 1.08997 * 109.47107 * 60.00587 * 11 9 8 43 43 H 0.96998 * 119.99987 * 132.02078 * 13 12 4 44 44 H 1.09005 * 109.47123 * 299.99834 * 16 14 13 45 45 H 1.08997 * 109.47122 * 59.99478 * 16 14 13 46 46 H 1.09005 * 109.47223 * 300.00103 * 17 16 14 47 47 H 1.09005 * 109.47029 * 59.99646 * 17 16 14 48 48 H 0.96998 * 119.99979 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5456 1.4430 -0.0637 5 6 4.2807 0.8594 0.9498 6 6 5.6621 0.8599 0.8923 7 6 6.3124 1.4433 -0.1798 8 6 5.5834 2.0280 -1.1964 9 6 6.2928 2.6640 -2.3640 10 6 7.1944 3.7926 -1.8596 11 6 7.1436 1.6120 -3.0783 12 6 4.1955 2.0296 -1.1414 13 7 3.4540 2.6263 -2.1671 14 6 2.4131 1.9692 -2.7161 15 8 2.1415 0.8465 -2.3463 16 6 1.5868 2.6295 -3.7896 17 6 0.4779 1.6759 -4.2386 18 6 -0.3488 2.3364 -5.3116 19 1 -0.1076 3.3365 -5.6401 20 6 -1.4136 1.6642 -5.8731 21 7 -2.1354 2.2409 -6.8092 22 14 -1.8312 -0.0654 -5.3045 23 1 -2.7915 0.0036 -4.1738 24 1 -2.4418 -0.8217 -6.4271 25 1 -0.5922 -0.7531 -4.8602 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7148 1.9429 0.9121 32 1 1.6396 1.9695 -0.8661 33 1 3.7758 0.4030 1.7884 34 1 6.2346 0.4033 1.6862 35 1 7.3916 1.4417 -0.2220 36 1 5.5573 3.0696 -3.0589 37 1 7.9298 3.3870 -1.1647 38 1 7.7078 4.2523 -2.7041 39 1 6.5882 4.5419 -1.3507 40 1 7.6570 2.0722 -3.9225 41 1 7.8790 1.2065 -2.3835 42 1 6.5013 0.8081 -3.4376 43 1 3.6889 3.5128 -2.4829 44 1 1.1428 3.5437 -3.3956 45 1 2.2234 2.8722 -4.6404 46 1 0.9222 0.7618 -4.6327 47 1 -0.1588 1.4328 -3.3878 48 1 -2.8843 1.7679 -7.2045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292279731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:30 Heat of formation + Delta-G solvation = -48.407963 kcal Electronic energy + Delta-G solvation = -25726.395686 eV Core-core repulsion = 22358.747552 eV Total energy + Delta-G solvation = -3367.648133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01827 -39.77446 -37.06131 -35.77819 -35.44961 -35.08272 -33.33421 -31.27162 -30.34661 -28.04360 -27.96782 -27.22197 -24.37104 -23.99932 -22.45040 -22.17236 -21.12064 -20.23341 -19.27372 -18.55980 -18.01842 -17.19887 -16.52165 -16.26950 -15.96063 -15.50589 -15.28729 -15.05385 -14.80871 -14.75266 -14.59289 -14.50824 -14.23186 -14.06592 -13.50235 -13.41580 -13.10598 -13.00789 -12.94583 -12.74375 -12.63698 -12.19248 -12.11024 -12.01602 -11.95538 -11.88869 -11.76457 -11.66807 -11.43961 -11.41227 -11.33963 -10.92868 -10.78437 -10.61450 -9.44876 -9.07414 -8.32250 -6.34766 0.38106 0.47985 1.31485 1.33835 1.48187 1.70466 2.20076 2.33536 2.84459 3.03981 3.65944 3.83807 3.92494 4.04382 4.10761 4.27641 4.32398 4.32785 4.35511 4.43315 4.45475 4.49634 4.50851 4.61102 4.73927 4.79070 4.83086 4.91204 4.94431 4.97793 4.99705 5.02617 5.10647 5.18143 5.29069 5.29556 5.31337 5.40471 5.40652 5.46124 5.48430 5.59407 5.61634 5.62027 5.69897 5.74521 6.17663 6.23068 6.51370 6.72033 7.30520 7.32781 8.83620 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.004392 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.094166 B = 6374.322967 C = 7652.353782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.075 4.075 4 C -0.089 4.089 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.093 4.093 9 C -0.058 4.058 10 C -0.137 4.137 11 C -0.139 4.139 12 C 0.125 3.875 13 N -0.669 5.669 14 C 0.509 3.491 15 O -0.537 6.537 16 C -0.115 4.115 17 C 0.012 3.988 18 C -0.528 4.528 19 H 0.049 0.951 20 C 0.016 3.984 21 N -0.944 5.944 22 Si 0.935 3.065 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.261 1.261 26 H 0.030 0.970 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.419 0.581 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.009 0.991 47 H 0.011 0.989 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.645 0.573 17.006 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.138 4.138 3 C -0.112 4.112 4 C -0.091 4.091 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.129 4.129 8 C -0.095 4.095 9 C -0.077 4.077 10 C -0.194 4.194 11 C -0.196 4.196 12 C 0.031 3.969 13 N -0.318 5.318 14 C 0.299 3.701 15 O -0.413 6.413 16 C -0.155 4.155 17 C -0.026 4.026 18 C -0.566 4.566 19 H 0.067 0.933 20 C -0.182 4.182 21 N -0.585 5.585 22 Si 0.760 3.240 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.185 1.185 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.052 0.948 43 H 0.258 0.742 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.028 0.972 47 H 0.029 0.971 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.253 -0.230 17.102 26.509 hybrid contribution -0.842 -0.256 -0.511 1.018 sum 19.411 -0.486 16.591 25.540 Atomic orbital electron populations 1.21712 0.96318 1.01376 1.00958 1.21349 0.95206 0.96016 1.01191 1.20692 0.91154 0.98014 1.01328 1.19981 0.95973 0.99627 0.93509 1.21060 0.94577 0.99772 0.98420 1.21392 0.93977 0.99737 0.99165 1.21059 1.00640 0.97961 0.93270 1.19983 0.91009 1.00683 0.97866 1.20103 0.97445 0.96288 0.93824 1.21820 0.99050 0.96902 1.01670 1.21804 0.99262 0.97904 1.00676 1.17630 0.90467 1.00030 0.88728 1.43462 1.31026 1.20783 1.36484 1.21192 0.80080 0.86436 0.82393 1.90720 1.69045 1.19952 1.61611 1.21494 0.97144 1.00236 0.96635 1.19161 0.93624 0.94967 0.94894 1.21432 1.12853 1.02195 1.20116 0.93283 1.25758 0.95955 1.01713 0.94726 1.70023 1.20259 1.39757 1.28420 0.85873 0.79153 0.80745 0.78229 1.19341 1.20579 1.18486 0.95073 0.92696 0.91764 0.92738 0.91671 0.91515 0.92394 0.84872 0.83449 0.83655 0.91190 0.91537 0.91303 0.92749 0.91187 0.91335 0.94753 0.74208 0.88194 0.88162 0.97227 0.97093 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 9.91 71.98 0.71 -3.74 16 2 C -0.10 -3.07 5.02 30.59 0.15 -2.92 16 3 C -0.07 -2.22 4.49 29.85 0.13 -2.08 16 4 C -0.09 -2.43 4.92 -19.74 -0.10 -2.53 16 5 C -0.12 -2.68 9.27 22.25 0.21 -2.47 16 6 C -0.12 -2.28 10.04 22.29 0.22 -2.05 16 7 C -0.11 -2.02 8.71 22.25 0.19 -1.83 16 8 C -0.09 -2.01 4.80 -19.74 -0.09 -2.10 16 9 C -0.06 -1.02 3.03 -11.54 -0.03 -1.05 16 10 C -0.14 -1.78 9.01 71.98 0.65 -1.13 16 11 C -0.14 -2.36 9.01 71.98 0.65 -1.71 16 12 C 0.12 3.31 5.96 38.15 0.23 3.54 16 13 N -0.67 -17.83 4.28 -303.50 -1.30 -19.13 16 14 C 0.51 17.53 5.80 87.66 0.51 18.04 16 15 O -0.54 -21.78 10.31 -3.03 -0.03 -21.81 16 16 C -0.12 -4.27 5.64 29.85 0.17 -4.11 16 17 C 0.01 0.56 3.33 29.85 0.10 0.66 16 18 C -0.53 -30.25 9.66 25.60 0.25 -30.00 16 19 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16 20 C 0.02 0.96 5.47 84.65 0.46 1.42 16 21 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 22 Si 0.94 46.72 27.47 68.60 1.88 48.61 16 23 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.26 -12.92 6.54 99.48 0.65 -12.27 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 2.03 6.14 -2.39 -0.01 2.01 16 30 H 0.06 1.68 7.58 -2.39 -0.02 1.66 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.98 4.43 -2.39 -0.01 1.96 16 33 H 0.13 2.53 7.70 -2.91 -0.02 2.51 16 34 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.15 1.87 7.10 -2.91 -0.02 1.85 16 36 H 0.07 1.32 6.37 -2.38 -0.02 1.30 16 37 H 0.07 0.74 7.39 -2.39 -0.02 0.72 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 0.97 7.39 -2.39 -0.02 0.95 16 42 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.42 8.64 7.89 -92.71 -0.73 7.91 16 44 H 0.10 3.41 8.14 -2.38 -0.02 3.39 16 45 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 46 H 0.01 0.48 7.16 -2.38 -0.02 0.47 16 47 H 0.01 0.54 7.53 -2.38 -0.02 0.52 16 48 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -70.56 373.28 5.41 -65.15 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.15 Total: 20.09 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 4.41 Total: -34.08 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.00 Total: -77.96 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.03 Total: -21.81 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.88 Total: 48.61 kcal Total: -70.56 5.41 -65.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292279731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.738 kcal (2) G-P(sol) polarization free energy of solvation -70.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds