Wall clock time and date at job start Tue Mar 31 2020 08:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46904 * 2 1 4 4 C 1.52994 * 109.47203 * 119.99798 * 2 1 3 5 5 C 1.52999 * 109.47082 * 240.00188 * 2 1 3 6 6 C 1.52995 * 109.47238 * 65.12240 * 5 2 1 7 7 H 1.09001 * 109.47490 * 52.09038 * 6 5 2 8 8 N 1.46499 * 109.47213 * 172.08787 * 6 5 2 9 9 C 1.34772 * 120.00228 * 275.63484 * 8 6 5 10 10 O 1.21283 * 119.99962 * 5.20445 * 9 8 6 11 11 C 1.50698 * 120.00093 * 185.20284 * 9 8 6 12 12 C 1.53004 * 109.47077 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47077 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00167 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00099 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99735 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00142 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47087 * 89.99694 * 17 15 13 19 19 H 1.48500 * 109.47440 * 209.99621 * 17 15 13 20 20 H 1.48503 * 109.47221 * 329.99835 * 17 15 13 21 21 C 1.50699 * 109.47240 * 292.08790 * 6 5 2 22 22 C 1.38241 * 120.00222 * 296.16484 * 21 6 5 23 23 C 1.38233 * 119.99868 * 179.78607 * 22 21 6 24 24 C 1.38231 * 120.00168 * 0.44364 * 23 22 21 25 25 C 1.38233 * 120.00146 * 359.80728 * 24 23 22 26 26 C 1.38234 * 120.00211 * 116.43747 * 21 6 5 27 27 H 1.09000 * 109.47110 * 42.00173 * 1 2 3 28 28 H 1.08997 * 109.47120 * 162.00333 * 1 2 3 29 29 H 1.09002 * 109.47097 * 282.00458 * 1 2 3 30 30 H 1.09001 * 109.47382 * 66.61738 * 3 2 1 31 31 H 1.09006 * 109.46936 * 186.61312 * 3 2 1 32 32 H 1.08998 * 109.47375 * 306.61277 * 3 2 1 33 33 H 1.09005 * 109.46961 * 60.00102 * 4 2 1 34 34 H 1.09005 * 109.47358 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47702 * 300.00171 * 4 2 1 36 36 H 1.08997 * 109.47136 * 185.12318 * 5 2 1 37 37 H 1.08998 * 109.46791 * 305.12243 * 5 2 1 38 38 H 0.97002 * 119.99590 * 95.63000 * 8 6 5 39 39 H 1.09005 * 109.47010 * 299.99489 * 11 9 8 40 40 H 1.09000 * 109.47529 * 60.00130 * 11 9 8 41 41 H 1.08992 * 109.47269 * 299.99862 * 12 11 9 42 42 H 1.09002 * 109.47331 * 59.99981 * 12 11 9 43 43 H 0.97002 * 119.99700 * 179.97438 * 16 15 13 44 44 H 1.08001 * 119.99358 * 359.97438 * 22 21 6 45 45 H 1.08001 * 119.99370 * 180.27311 * 23 22 21 46 46 H 1.08002 * 119.99867 * 179.83192 * 24 23 22 47 47 H 1.08000 * 120.00097 * 179.97438 * 25 24 23 48 48 H 1.08007 * 119.99876 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0400 -0.7212 -1.2493 6 6 1.6379 0.0706 -2.4951 7 1 1.9540 1.1078 -2.3842 8 7 2.2830 -0.5130 -3.6739 9 6 3.5421 -0.1583 -3.9980 10 8 4.1750 0.5705 -3.2635 11 6 4.1638 -0.6670 -5.2730 12 6 5.5871 -0.1200 -5.4001 13 6 6.2090 -0.6293 -6.6748 14 1 5.6456 -1.2785 -7.3287 15 6 7.4976 -0.2673 -7.0059 16 7 8.1837 0.5229 -6.2094 17 14 8.2687 -0.8991 -8.5855 18 1 7.9827 0.0509 -9.6905 19 1 9.7376 -1.0209 -8.4052 20 1 7.6987 -2.2298 -8.9169 21 6 0.1413 0.0167 -2.6632 22 6 -0.4845 -1.1927 -2.9016 23 6 -1.8577 -1.2426 -3.0514 24 6 -2.6044 -0.0820 -2.9719 25 6 -1.9781 1.1281 -2.7387 26 6 -0.6053 1.1775 -2.5846 27 1 -0.3633 0.7637 -0.6877 28 1 -0.3633 -0.9774 -0.3175 29 1 -0.3633 0.2137 1.0052 30 1 1.7766 1.9210 0.9433 31 1 3.1236 1.4448 -0.1184 32 1 1.5833 1.9894 -0.8249 33 1 1.6767 -1.7489 1.2492 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -0.2074 2.1392 36 1 3.1261 -0.8014 -1.2046 37 1 1.6037 -1.7189 -1.2963 38 1 1.8038 -1.1548 -4.2211 39 1 4.1941 -1.7565 -5.2530 40 1 3.5695 -0.3357 -6.1245 41 1 5.5572 0.9693 -5.4200 42 1 6.1812 -0.4518 -4.5486 43 1 9.0904 0.7772 -6.4421 44 1 0.0994 -2.0989 -2.9678 45 1 -2.3470 -2.1881 -3.2332 46 1 -3.6770 -0.1207 -3.0916 47 1 -2.5614 2.0350 -2.6770 48 1 -0.1160 2.1229 -2.4023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292350439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:48 Heat of formation + Delta-G solvation = -37.557902 kcal Electronic energy + Delta-G solvation = -25248.568026 eV Core-core repulsion = 21881.390387 eV Total energy + Delta-G solvation = -3367.177639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62572 -38.78053 -37.43629 -34.58488 -33.41714 -31.61920 -31.17279 -30.68866 -28.54527 -27.32366 -27.11370 -25.68990 -23.99129 -22.84807 -21.83625 -20.65253 -19.60257 -18.71128 -17.37535 -16.72562 -16.00144 -15.78384 -15.12494 -15.05614 -14.77136 -14.52013 -14.44819 -14.24432 -13.94666 -13.65575 -13.42815 -13.11930 -12.90249 -12.53276 -12.35069 -12.17636 -12.04686 -11.89483 -11.60769 -11.52163 -11.24038 -11.13637 -10.98912 -10.91929 -10.74883 -10.63023 -10.57010 -10.50557 -9.92924 -9.63790 -9.20478 -9.07452 -8.97704 -8.79420 -8.59804 -8.30040 -5.94376 -3.98546 1.12855 1.20344 3.28115 3.34463 3.40116 3.42486 3.46208 3.76436 4.48443 4.49108 4.64998 4.77475 4.79748 4.82607 4.87507 4.92062 5.27843 5.29499 5.32790 5.40567 5.45072 5.51351 5.57347 5.62943 5.70092 5.73674 5.76701 5.82561 5.89086 5.90660 6.02532 6.05322 6.11368 6.23105 6.25240 6.25972 6.28687 6.32618 6.35315 6.42919 6.47655 6.79260 6.81847 6.92699 7.76481 7.88984 7.93511 8.09385 8.41081 8.82146 9.10201 9.64830 11.16556 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.003208 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.967318 B = 8725.058533 C = 9682.611295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.063 4.063 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.115 4.115 6 C 0.181 3.819 7 H 0.096 0.904 8 N -0.739 5.739 9 C 0.511 3.489 10 O -0.532 6.532 11 C -0.130 4.130 12 C 0.038 3.962 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.073 4.073 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.105 4.105 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.395 0.605 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.260 0.740 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.919 -2.446 11.659 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.064 4.064 3 C -0.202 4.202 4 C -0.197 4.197 5 C -0.154 4.154 6 C 0.077 3.923 7 H 0.114 0.886 8 N -0.392 5.392 9 C 0.300 3.700 10 O -0.407 6.407 11 C -0.170 4.170 12 C 0.000 4.000 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.073 4.073 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.124 4.124 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.229 0.771 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.245 -1.803 12.201 25.435 hybrid contribution 0.172 -0.685 -1.097 1.305 sum -22.073 -2.488 11.103 24.833 Atomic orbital electron populations 1.22487 0.94734 1.02519 1.01627 1.20445 0.95523 0.95714 0.94723 1.21967 1.01902 0.95169 1.01138 1.21872 1.01200 0.99914 0.96712 1.22088 1.02068 0.98387 0.92817 1.19896 0.87133 0.99531 0.85785 0.88590 1.46350 1.16085 1.47650 1.29126 1.21552 0.80205 0.79966 0.88324 1.90664 1.61163 1.36570 1.52259 1.21872 1.01312 1.01433 0.92423 1.18888 0.87271 0.96882 0.96938 1.21231 0.98849 1.30118 1.06297 0.92648 1.25024 0.97293 0.95195 0.96884 1.70002 1.10845 1.35136 1.36856 0.86597 0.78467 0.79201 0.83713 1.20687 1.21238 1.19897 1.19948 0.95131 0.93598 0.98670 1.20975 0.94688 0.97382 1.00114 1.21102 0.93929 0.98335 1.00240 1.21123 0.99763 0.92777 1.00375 1.21106 0.94485 0.97968 1.00323 1.20975 0.94086 0.97807 0.99486 0.90751 0.92753 0.93646 0.93011 0.91954 0.92636 0.92940 0.92545 0.92853 0.90626 0.91911 0.77055 0.90372 0.90283 0.95848 0.95831 0.92982 0.86056 0.86170 0.86319 0.86097 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 7.18 37.16 0.27 -1.24 16 2 C -0.06 -0.68 0.80 -154.51 -0.12 -0.80 16 3 C -0.14 -1.64 7.74 37.16 0.29 -1.35 16 4 C -0.14 -1.40 8.39 37.15 0.31 -1.08 16 5 C -0.11 -1.41 4.12 -26.73 -0.11 -1.52 16 6 C 0.18 2.31 1.93 -69.09 -0.13 2.17 16 7 H 0.10 1.41 5.33 -51.93 -0.28 1.13 16 8 N -0.74 -10.50 5.04 -54.94 -0.28 -10.78 16 9 C 0.51 9.78 7.77 -10.99 -0.09 9.69 16 10 O -0.53 -12.29 15.58 5.55 0.09 -12.20 16 11 C -0.13 -2.67 5.64 -27.88 -0.16 -2.82 16 12 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 13 C -0.53 -15.04 9.11 -34.44 -0.31 -15.36 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 21 C -0.07 -0.76 2.77 -104.62 -0.29 -1.05 16 22 C -0.11 -1.06 7.51 -39.58 -0.30 -1.35 16 23 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 24 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 25 C -0.12 -1.03 10.04 -39.58 -0.40 -1.43 16 26 C -0.11 -1.03 6.92 -39.58 -0.27 -1.31 16 27 H 0.07 0.71 3.74 -51.93 -0.19 0.52 16 28 H 0.05 0.53 6.84 -51.93 -0.35 0.17 16 29 H 0.04 0.41 8.01 -51.93 -0.42 0.00 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.62 6.15 -51.93 -0.32 0.30 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 37 H 0.06 0.70 7.29 -51.93 -0.38 0.32 16 38 H 0.40 4.64 7.92 -40.82 -0.32 4.31 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.12 1.03 7.64 -52.49 -0.40 0.63 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.12 1.15 7.66 -52.48 -0.40 0.74 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -33.19 376.47 -9.22 -42.41 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -8.09 Total: 2.68 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.33 Total: -17.72 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.46 Total: -37.61 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.19 -9.22 -42.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292350439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.849 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds