Wall clock time and date at job start Tue Mar 31 2020 08:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46904 * 2 1 4 4 C 1.52994 * 109.47203 * 119.99798 * 2 1 3 5 5 C 1.52999 * 109.47082 * 240.00188 * 2 1 3 6 6 C 1.52995 * 109.47238 * 65.12240 * 5 2 1 7 7 H 1.09001 * 109.47490 * 52.09038 * 6 5 2 8 8 N 1.46499 * 109.47213 * 172.08787 * 6 5 2 9 9 C 1.34772 * 120.00228 * 275.63484 * 8 6 5 10 10 O 1.21283 * 119.99962 * 5.20445 * 9 8 6 11 11 C 1.50698 * 120.00093 * 185.20284 * 9 8 6 12 12 C 1.53004 * 109.47077 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47077 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00167 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00099 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99735 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00142 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47087 * 89.99694 * 17 15 13 19 19 H 1.48500 * 109.47440 * 209.99621 * 17 15 13 20 20 H 1.48503 * 109.47221 * 329.99835 * 17 15 13 21 21 C 1.50699 * 109.47240 * 292.08790 * 6 5 2 22 22 C 1.38241 * 120.00222 * 296.16484 * 21 6 5 23 23 C 1.38233 * 119.99868 * 179.78607 * 22 21 6 24 24 C 1.38231 * 120.00168 * 0.44364 * 23 22 21 25 25 C 1.38233 * 120.00146 * 359.80728 * 24 23 22 26 26 C 1.38234 * 120.00211 * 116.43747 * 21 6 5 27 27 H 1.09000 * 109.47110 * 42.00173 * 1 2 3 28 28 H 1.08997 * 109.47120 * 162.00333 * 1 2 3 29 29 H 1.09002 * 109.47097 * 282.00458 * 1 2 3 30 30 H 1.09001 * 109.47382 * 66.61738 * 3 2 1 31 31 H 1.09006 * 109.46936 * 186.61312 * 3 2 1 32 32 H 1.08998 * 109.47375 * 306.61277 * 3 2 1 33 33 H 1.09005 * 109.46961 * 60.00102 * 4 2 1 34 34 H 1.09005 * 109.47358 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47702 * 300.00171 * 4 2 1 36 36 H 1.08997 * 109.47136 * 185.12318 * 5 2 1 37 37 H 1.08998 * 109.46791 * 305.12243 * 5 2 1 38 38 H 0.97002 * 119.99590 * 95.63000 * 8 6 5 39 39 H 1.09005 * 109.47010 * 299.99489 * 11 9 8 40 40 H 1.09000 * 109.47529 * 60.00130 * 11 9 8 41 41 H 1.08992 * 109.47269 * 299.99862 * 12 11 9 42 42 H 1.09002 * 109.47331 * 59.99981 * 12 11 9 43 43 H 0.97002 * 119.99700 * 179.97438 * 16 15 13 44 44 H 1.08001 * 119.99358 * 359.97438 * 22 21 6 45 45 H 1.08001 * 119.99370 * 180.27311 * 23 22 21 46 46 H 1.08002 * 119.99867 * 179.83192 * 24 23 22 47 47 H 1.08000 * 120.00097 * 179.97438 * 25 24 23 48 48 H 1.08007 * 119.99876 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0400 -0.7212 -1.2493 6 6 1.6379 0.0706 -2.4951 7 1 1.9540 1.1078 -2.3842 8 7 2.2830 -0.5130 -3.6739 9 6 3.5421 -0.1583 -3.9980 10 8 4.1750 0.5705 -3.2635 11 6 4.1638 -0.6670 -5.2730 12 6 5.5871 -0.1200 -5.4001 13 6 6.2090 -0.6293 -6.6748 14 1 5.6456 -1.2785 -7.3287 15 6 7.4976 -0.2673 -7.0059 16 7 8.1837 0.5229 -6.2094 17 14 8.2687 -0.8991 -8.5855 18 1 7.9827 0.0509 -9.6905 19 1 9.7376 -1.0209 -8.4052 20 1 7.6987 -2.2298 -8.9169 21 6 0.1413 0.0167 -2.6632 22 6 -0.4845 -1.1927 -2.9016 23 6 -1.8577 -1.2426 -3.0514 24 6 -2.6044 -0.0820 -2.9719 25 6 -1.9781 1.1281 -2.7387 26 6 -0.6053 1.1775 -2.5846 27 1 -0.3633 0.7637 -0.6877 28 1 -0.3633 -0.9774 -0.3175 29 1 -0.3633 0.2137 1.0052 30 1 1.7766 1.9210 0.9433 31 1 3.1236 1.4448 -0.1184 32 1 1.5833 1.9894 -0.8249 33 1 1.6767 -1.7489 1.2492 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -0.2074 2.1392 36 1 3.1261 -0.8014 -1.2046 37 1 1.6037 -1.7189 -1.2963 38 1 1.8038 -1.1548 -4.2211 39 1 4.1941 -1.7565 -5.2530 40 1 3.5695 -0.3357 -6.1245 41 1 5.5572 0.9693 -5.4200 42 1 6.1812 -0.4518 -4.5486 43 1 9.0904 0.7772 -6.4421 44 1 0.0994 -2.0989 -2.9678 45 1 -2.3470 -2.1881 -3.2332 46 1 -3.6770 -0.1207 -3.0916 47 1 -2.5614 2.0350 -2.6770 48 1 -0.1160 2.1229 -2.4023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292350439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:47 Heat of formation + Delta-G solvation = -56.694992 kcal Electronic energy + Delta-G solvation = -25249.397873 eV Core-core repulsion = 21881.390387 eV Total energy + Delta-G solvation = -3368.007486 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61060 -40.10977 -38.32041 -35.85514 -35.50085 -33.17806 -32.16252 -31.79798 -29.59389 -28.24494 -27.91511 -27.61054 -25.08201 -23.76187 -23.31079 -21.71479 -21.11752 -19.62381 -18.89028 -18.07360 -17.43091 -16.93019 -16.50234 -16.43188 -16.05497 -15.67834 -15.37873 -15.34202 -15.09305 -14.54537 -14.39148 -14.22222 -14.16337 -14.10662 -13.72291 -13.32167 -13.22720 -12.95170 -12.86750 -12.79109 -12.47959 -12.44606 -12.38925 -11.95276 -11.92124 -11.82673 -11.65624 -11.61254 -11.53647 -11.43701 -11.30223 -10.71705 -10.56994 -10.04265 -9.70113 -9.43569 -8.18008 -6.32103 0.41334 0.53897 1.41763 1.44646 1.55580 1.73196 2.27007 2.45046 2.95152 3.14871 3.58744 3.78160 3.88359 3.97018 4.01246 4.12157 4.19039 4.33607 4.39238 4.42597 4.52088 4.55789 4.62746 4.65611 4.68281 4.77939 4.80090 4.89356 4.92479 5.01029 5.03940 5.08427 5.11227 5.15041 5.20026 5.24520 5.35041 5.45017 5.48325 5.53308 5.54451 5.63123 5.63582 5.68498 5.75124 5.85599 6.13768 6.17879 6.62124 6.86308 7.35859 7.38505 8.94641 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.003208 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.967318 B = 8725.058533 C = 9682.611295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.109 4.109 6 C 0.184 3.816 7 H 0.071 0.929 8 N -0.715 5.715 9 C 0.513 3.487 10 O -0.582 6.582 11 C -0.120 4.120 12 C 0.044 3.956 13 C -0.543 4.543 14 H 0.075 0.925 15 C -0.007 4.007 16 N -0.937 5.937 17 Si 0.974 3.026 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.255 1.255 21 C -0.083 4.083 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.117 4.117 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.412 0.588 39 H 0.103 0.897 40 H 0.101 0.899 41 H -0.019 1.019 42 H -0.018 1.018 43 H 0.263 0.737 44 H 0.129 0.871 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.087 -4.283 10.600 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.200 4.200 4 C -0.196 4.196 5 C -0.148 4.148 6 C 0.080 3.920 7 H 0.090 0.910 8 N -0.368 5.368 9 C 0.301 3.699 10 O -0.461 6.461 11 C -0.160 4.160 12 C 0.006 3.994 13 C -0.581 4.581 14 H 0.093 0.907 15 C -0.205 4.205 16 N -0.577 5.577 17 Si 0.798 3.202 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.179 1.179 21 C -0.084 4.084 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.135 4.135 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.249 0.751 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.000 1.000 42 H 0.001 0.999 43 H 0.071 0.929 44 H 0.147 0.853 45 H 0.160 0.840 46 H 0.161 0.839 47 H 0.157 0.843 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -25.482 -3.675 11.135 28.051 hybrid contribution 1.080 -0.081 -0.723 1.302 sum -24.403 -3.756 10.412 26.795 Atomic orbital electron populations 1.22399 0.93119 1.02779 1.02256 1.20430 0.96679 0.94839 0.94197 1.21954 0.99997 0.96199 1.01897 1.21866 1.00302 1.00591 0.96819 1.22014 0.99810 0.99375 0.93568 1.19889 0.88987 0.98063 0.85084 0.91047 1.46082 1.14344 1.46865 1.29505 1.21295 0.81463 0.79504 0.87626 1.90655 1.62815 1.39033 1.53628 1.21643 0.97628 1.02602 0.94091 1.18668 0.91014 0.94397 0.95300 1.21716 0.99425 1.30186 1.06793 0.90675 1.26143 0.98068 0.95227 1.01019 1.70183 1.11347 1.36788 1.39431 0.85318 0.77123 0.79324 0.78460 1.19702 1.21157 1.17880 1.19669 0.93101 0.94705 1.00914 1.21095 0.95496 0.96967 0.99991 1.21386 0.93397 0.99507 0.99317 1.21472 1.01069 0.92327 0.98924 1.21344 0.93879 0.99185 0.99670 1.21042 0.94940 0.97455 1.00077 0.90675 0.92398 0.92694 0.91413 0.94809 0.92834 0.91971 0.94034 0.91510 0.94251 0.90420 0.75119 0.87886 0.88036 1.00012 0.99933 0.92871 0.85295 0.83958 0.83946 0.84327 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 7.18 71.98 0.52 -2.09 16 2 C -0.06 -1.30 0.80 -52.18 -0.04 -1.34 16 3 C -0.14 -3.41 7.74 71.98 0.56 -2.85 16 4 C -0.14 -2.71 8.39 71.98 0.60 -2.11 16 5 C -0.11 -2.73 4.12 30.59 0.13 -2.61 16 6 C 0.18 4.76 1.93 44.24 0.09 4.85 16 7 H 0.07 2.24 5.33 -2.39 -0.01 2.22 16 8 N -0.72 -20.33 5.04 -446.11 -2.25 -22.58 16 9 C 0.51 20.34 7.77 87.66 0.68 21.02 16 10 O -0.58 -28.93 15.58 -3.04 -0.05 -28.98 16 11 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 12 C 0.04 2.49 4.26 29.85 0.13 2.62 16 13 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 14 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 15 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 16 N -0.94 -60.20 13.29 21.45 0.28 -59.91 16 17 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 21 C -0.08 -1.64 2.77 -19.86 -0.06 -1.69 16 22 C -0.12 -1.88 7.51 22.27 0.17 -1.71 16 23 C -0.12 -1.54 10.05 22.27 0.22 -1.32 16 24 C -0.12 -1.50 10.05 22.27 0.22 -1.28 16 25 C -0.12 -1.77 10.04 22.27 0.22 -1.55 16 26 C -0.12 -2.14 6.92 22.27 0.15 -1.99 16 27 H 0.07 1.33 3.74 -2.39 -0.01 1.32 16 28 H 0.06 0.98 6.84 -2.39 -0.02 0.97 16 29 H 0.05 0.86 8.01 -2.39 -0.02 0.85 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.05 1.27 6.15 -2.39 -0.01 1.25 16 33 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.04 1.27 8.00 -2.39 -0.02 1.25 16 37 H 0.08 1.68 7.29 -2.39 -0.02 1.66 16 38 H 0.41 9.01 7.92 -92.71 -0.73 8.28 16 39 H 0.10 3.72 8.14 -2.38 -0.02 3.70 16 40 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 41 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 42 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 43 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.13 1.82 7.64 -2.91 -0.02 1.80 16 45 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 46 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 47 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 48 H 0.12 2.20 7.66 -2.91 -0.02 2.18 16 Total: -1.00 -76.23 376.47 4.67 -71.56 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.20 Total: 21.05 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 4.46 Total: -27.93 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -1.96 Total: -82.49 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.05 Total: -28.98 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -76.23 4.67 -71.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292350439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.867 kcal (2) G-P(sol) polarization free energy of solvation -76.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds