Wall clock time and date at job start Tue Mar 31 2020 08:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 C 1.52996 * 109.47203 * 89.99823 * 9 8 7 11 11 N 1.46498 * 109.46762 * 179.97438 * 10 9 8 12 12 C 1.34784 * 119.99897 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99847 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99960 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.46997 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47378 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99784 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00407 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99649 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00200 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47424 * 89.99593 * 20 18 16 22 22 H 1.48498 * 109.47241 * 209.99907 * 20 18 16 23 23 H 1.48501 * 109.47173 * 329.99824 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 25 25 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 26 26 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 27 27 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 28 28 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 31 31 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 32 32 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 33 33 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 34 34 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 35 35 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 36 36 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 38 38 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 39 39 H 1.08994 * 109.47503 * 299.99842 * 10 9 8 40 40 H 1.09001 * 109.47176 * 60.00391 * 10 9 8 41 41 H 0.97001 * 120.00666 * 359.97438 * 11 10 9 42 42 H 1.09003 * 109.46772 * 299.99441 * 14 12 11 43 43 H 1.08996 * 109.47586 * 59.99492 * 14 12 11 44 44 H 1.09003 * 109.46883 * 299.99349 * 15 14 12 45 45 H 1.08996 * 109.47387 * 59.99346 * 15 14 12 46 46 H 0.96999 * 119.99692 * 180.02562 * 19 18 16 47 47 H 1.08001 * 120.00299 * 179.97438 * 24 8 7 48 48 H 1.07997 * 120.00423 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 6 3.4494 -2.7215 4.7226 10 6 4.7956 -3.3843 4.4237 11 7 5.2782 -4.0722 5.6237 12 6 6.4539 -4.7308 5.5961 13 8 7.1120 -4.7543 4.5775 14 6 6.9501 -5.4389 6.8303 15 6 8.2969 -6.1005 6.5319 16 6 8.7935 -6.8081 7.7662 17 1 8.2073 -6.7876 8.6730 18 6 9.9962 -7.4817 7.7380 19 7 10.7098 -7.5072 6.6336 20 14 10.6121 -8.3582 9.2683 21 1 10.1126 -9.7567 9.2726 22 1 12.0971 -8.3629 9.2722 23 1 10.1161 -7.6518 10.4767 24 6 3.2880 -0.6902 3.2690 25 6 2.8265 -0.0384 2.1407 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2076 -2.1391 34 1 3.1300 -0.7218 -1.2489 35 1 1.0771 -2.5585 0.7387 36 1 1.8973 -3.7190 2.7496 37 1 3.5709 -2.0006 5.5310 38 1 2.7277 -3.4824 5.0198 39 1 4.6742 -4.1053 3.6153 40 1 5.5172 -2.6234 4.1266 41 1 4.7521 -4.0532 6.4385 42 1 7.0711 -4.7179 7.6388 43 1 6.2288 -6.2001 7.1273 44 1 8.1763 -6.8214 5.7232 45 1 9.0181 -5.3390 6.2351 46 1 11.5558 -7.9814 6.6136 47 1 3.9085 -0.1651 3.9801 48 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292595401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:26 Heat of formation + Delta-G solvation = -52.485136 kcal Electronic energy + Delta-G solvation = -23354.728792 eV Core-core repulsion = 19986.903859 eV Total energy + Delta-G solvation = -3367.824933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24826 -39.08110 -37.17589 -34.92417 -33.41649 -32.10168 -31.33264 -30.86485 -28.21220 -27.73155 -27.61245 -25.69757 -23.73542 -22.58619 -21.73875 -21.33225 -19.63425 -19.40147 -16.98461 -16.63074 -15.92697 -15.72781 -15.58344 -15.11517 -15.00998 -14.63226 -14.41740 -14.16513 -14.10412 -13.81993 -13.53645 -13.29154 -12.96960 -12.54584 -12.46217 -12.26397 -12.17720 -12.06756 -11.90912 -11.81185 -11.73053 -11.27690 -11.26512 -11.13375 -10.91024 -10.89021 -10.75990 -10.57926 -9.92820 -9.63774 -9.15821 -9.10052 -9.00408 -8.73847 -8.69161 -8.29882 -5.93989 -3.98353 1.11541 1.22462 3.30672 3.34683 3.40241 3.42728 3.45992 3.67117 4.23941 4.37256 4.49137 4.62493 4.68315 4.73812 4.81516 4.92210 4.98528 5.02579 5.19011 5.24076 5.25478 5.38302 5.40435 5.40810 5.42005 5.50169 5.51271 5.61307 5.62482 5.69463 5.78021 5.85275 5.87636 5.93260 5.94431 6.05505 6.26196 6.26446 6.27875 6.42020 6.44812 6.75496 6.81860 6.92879 7.76796 7.89282 7.93276 8.09887 8.41236 8.82958 9.10515 9.64992 11.16992 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.040007 B = 0.001858 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.713849 B =15066.905675 C =15265.013255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.074 4.074 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.082 4.082 9 C -0.091 4.091 10 C 0.126 3.874 11 N -0.746 5.746 12 C 0.508 3.492 13 O -0.535 6.535 14 C -0.130 4.130 15 C 0.036 3.964 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.111 4.111 25 C -0.120 4.120 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.023 0.977 45 H 0.023 0.977 46 H 0.261 0.739 47 H 0.122 0.878 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.080 17.630 -11.342 31.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.074 4.074 6 C -0.132 4.132 7 C -0.129 4.129 8 C -0.083 4.083 9 C -0.129 4.129 10 C 0.001 3.999 11 N -0.401 5.401 12 C 0.297 3.703 13 O -0.410 6.410 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.129 4.129 25 C -0.138 4.138 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.230 0.770 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.070 0.930 47 H 0.140 0.860 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.406 17.541 -12.180 31.683 hybrid contribution 0.128 -0.510 1.188 1.299 sum -23.278 17.031 -10.992 30.866 Atomic orbital electron populations 1.21885 0.93744 1.02057 1.01816 1.19506 0.95645 0.95066 0.92831 1.21965 1.01332 0.94959 1.01889 1.21895 1.01450 1.00208 0.96087 1.19794 0.97795 0.94101 0.95741 1.20932 1.00462 0.94303 0.97529 1.21045 0.97869 0.99729 0.94238 1.19692 0.98009 0.94221 0.96369 1.20793 0.96771 0.99751 0.95554 1.21192 0.93827 0.96258 0.88575 1.46225 1.23505 1.55967 1.14366 1.21568 0.79513 0.77752 0.91491 1.90673 1.56067 1.60207 1.34072 1.21862 1.02148 0.99391 0.93593 1.18900 0.88657 0.95697 0.96878 1.21231 1.05010 1.32856 0.97430 0.92599 1.25034 0.96823 0.96532 0.96063 1.70002 1.13762 1.42550 1.26517 0.86583 0.77948 0.79999 0.83354 1.20690 1.21235 1.19908 1.21075 0.99725 0.94298 0.97805 1.21155 0.98183 1.00177 0.94264 0.92530 0.92391 0.92431 0.92162 0.92407 0.92277 0.92395 0.92382 0.92347 0.86271 0.86026 0.90348 0.90348 0.91792 0.91800 0.76969 0.90267 0.90262 0.95834 0.95830 0.92968 0.86028 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.29 37.16 0.31 -0.52 16 2 C -0.03 -0.21 0.85 -155.66 -0.13 -0.34 16 3 C -0.14 -0.87 7.13 37.16 0.26 -0.60 16 4 C -0.14 -0.92 8.29 37.16 0.31 -0.61 16 5 C -0.07 -0.64 4.76 -104.62 -0.50 -1.14 16 6 C -0.11 -1.01 8.71 -39.59 -0.34 -1.35 16 7 C -0.11 -1.04 9.70 -39.59 -0.38 -1.43 16 8 C -0.08 -0.80 5.13 -104.62 -0.54 -1.34 16 9 C -0.09 -0.84 5.46 -27.88 -0.15 -0.99 16 10 C 0.13 1.61 5.66 -4.04 -0.02 1.59 16 11 N -0.75 -10.60 5.56 -60.30 -0.33 -10.93 16 12 C 0.51 10.04 7.83 -10.98 -0.09 9.95 16 13 O -0.54 -13.07 15.98 5.55 0.09 -12.98 16 14 C -0.13 -2.68 5.64 -27.89 -0.16 -2.84 16 15 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 16 C -0.53 -15.14 9.11 -34.44 -0.31 -15.45 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.11 -1.05 9.70 -39.58 -0.38 -1.43 16 25 C -0.12 -1.06 8.98 -39.58 -0.36 -1.42 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.34 7.39 -51.93 -0.38 -0.05 16 29 H 0.06 0.38 7.52 -51.93 -0.39 -0.02 16 30 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.06 0.34 7.51 -51.93 -0.39 -0.05 16 32 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.12 0.88 7.10 -52.49 -0.37 0.50 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.08 0.63 8.08 -51.93 -0.42 0.22 16 38 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.40 4.28 8.47 -40.82 -0.35 3.94 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.13 0.91 5.90 -52.49 -0.31 0.61 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -34.71 389.73 -9.81 -44.52 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.45 Total: -0.85 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -2.70 Total: -15.45 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.40 Total: -37.93 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.71 -9.81 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292595401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.966 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds