Wall clock time and date at job start Tue Mar 31 2020 08:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 C 1.52996 * 109.47203 * 89.99823 * 9 8 7 11 11 N 1.46498 * 109.46762 * 179.97438 * 10 9 8 12 12 C 1.34784 * 119.99897 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99847 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99960 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.46997 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47378 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99784 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00407 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99649 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00200 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47424 * 89.99593 * 20 18 16 22 22 H 1.48498 * 109.47241 * 209.99907 * 20 18 16 23 23 H 1.48501 * 109.47173 * 329.99824 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 25 25 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 26 26 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 27 27 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 28 28 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 31 31 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 32 32 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 33 33 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 34 34 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 35 35 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 36 36 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 38 38 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 39 39 H 1.08994 * 109.47503 * 299.99842 * 10 9 8 40 40 H 1.09001 * 109.47176 * 60.00391 * 10 9 8 41 41 H 0.97001 * 120.00666 * 359.97438 * 11 10 9 42 42 H 1.09003 * 109.46772 * 299.99441 * 14 12 11 43 43 H 1.08996 * 109.47586 * 59.99492 * 14 12 11 44 44 H 1.09003 * 109.46883 * 299.99349 * 15 14 12 45 45 H 1.08996 * 109.47387 * 59.99346 * 15 14 12 46 46 H 0.96999 * 119.99692 * 180.02562 * 19 18 16 47 47 H 1.08001 * 120.00299 * 179.97438 * 24 8 7 48 48 H 1.07997 * 120.00423 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 6 3.4494 -2.7215 4.7226 10 6 4.7956 -3.3843 4.4237 11 7 5.2782 -4.0722 5.6237 12 6 6.4539 -4.7308 5.5961 13 8 7.1120 -4.7543 4.5775 14 6 6.9501 -5.4389 6.8303 15 6 8.2969 -6.1005 6.5319 16 6 8.7935 -6.8081 7.7662 17 1 8.2073 -6.7876 8.6730 18 6 9.9962 -7.4817 7.7380 19 7 10.7098 -7.5072 6.6336 20 14 10.6121 -8.3582 9.2683 21 1 10.1126 -9.7567 9.2726 22 1 12.0971 -8.3629 9.2722 23 1 10.1161 -7.6518 10.4767 24 6 3.2880 -0.6902 3.2690 25 6 2.8265 -0.0384 2.1407 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2076 -2.1391 34 1 3.1300 -0.7218 -1.2489 35 1 1.0771 -2.5585 0.7387 36 1 1.8973 -3.7190 2.7496 37 1 3.5709 -2.0006 5.5310 38 1 2.7277 -3.4824 5.0198 39 1 4.6742 -4.1053 3.6153 40 1 5.5172 -2.6234 4.1266 41 1 4.7521 -4.0532 6.4385 42 1 7.0711 -4.7179 7.6388 43 1 6.2288 -6.2001 7.1273 44 1 8.1763 -6.8214 5.7232 45 1 9.0181 -5.3390 6.2351 46 1 11.5558 -7.9814 6.6136 47 1 3.9085 -0.1651 3.9801 48 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292595401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:25 Heat of formation + Delta-G solvation = -72.629846 kcal Electronic energy + Delta-G solvation = -23355.602332 eV Core-core repulsion = 19986.903859 eV Total energy + Delta-G solvation = -3368.698473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96464 -40.55746 -37.88032 -36.11753 -35.52792 -33.33639 -32.59510 -31.99296 -29.26740 -28.23448 -28.10309 -27.51109 -24.90187 -23.29300 -23.25245 -22.37725 -21.14256 -20.04294 -18.81665 -17.62539 -17.21381 -16.94486 -16.89801 -16.40534 -16.27970 -15.76431 -15.17277 -15.15143 -14.89887 -14.76428 -14.51210 -14.28667 -14.16747 -13.93624 -13.78377 -13.25040 -13.18989 -12.95348 -12.81270 -12.64059 -12.55897 -12.51808 -12.50473 -12.44421 -12.05793 -11.90795 -11.80418 -11.63147 -11.49383 -11.33984 -11.30116 -10.74506 -10.56755 -10.08175 -9.78158 -9.40551 -8.17513 -6.31782 0.41668 0.53453 1.42574 1.45590 1.56525 1.72185 2.26231 2.45573 2.85667 3.15377 3.67041 3.80599 3.94355 4.00709 4.06405 4.12222 4.16316 4.20071 4.28419 4.39661 4.52566 4.56624 4.58822 4.60008 4.62605 4.77824 4.79455 4.89551 4.94354 4.98424 5.01588 5.03130 5.06962 5.13546 5.18822 5.21939 5.27084 5.37552 5.43426 5.45900 5.52645 5.61323 5.63706 5.73338 5.77544 5.86086 6.14520 6.18052 6.63846 6.86996 7.36458 7.38911 8.95260 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.040007 B = 0.001858 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.713849 B =15066.905675 C =15265.013255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.032 4.032 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.078 4.078 6 C -0.124 4.124 7 C -0.122 4.122 8 C -0.098 4.098 9 C -0.076 4.076 10 C 0.127 3.873 11 N -0.718 5.718 12 C 0.509 3.491 13 O -0.593 6.593 14 C -0.119 4.119 15 C 0.040 3.960 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.976 3.024 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.255 1.255 24 C -0.122 4.122 25 C -0.130 4.130 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.419 0.581 42 H 0.106 0.894 43 H 0.106 0.894 44 H -0.019 1.019 45 H -0.019 1.019 46 H 0.263 0.737 47 H 0.130 0.870 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.164 18.179 -9.573 33.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.032 4.032 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.078 4.078 6 C -0.142 4.142 7 C -0.140 4.140 8 C -0.098 4.098 9 C -0.113 4.113 10 C 0.003 3.997 11 N -0.372 5.372 12 C 0.297 3.703 13 O -0.473 6.473 14 C -0.159 4.159 15 C 0.003 3.997 16 C -0.581 4.581 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.800 3.200 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.178 1.178 24 C -0.140 4.140 25 C -0.148 4.148 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.256 0.744 42 H 0.124 0.876 43 H 0.124 0.876 44 H -0.001 1.001 45 H -0.001 1.001 46 H 0.071 0.929 47 H 0.148 0.852 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.567 18.119 -10.369 33.008 hybrid contribution 0.730 -0.627 0.547 1.107 sum -24.837 17.493 -9.822 31.927 Atomic orbital electron populations 1.21863 0.92942 1.02217 1.02222 1.19561 0.96256 0.95319 0.92021 1.21958 1.01027 0.94543 1.02525 1.21891 1.00702 1.00388 0.96593 1.20067 0.97326 0.94190 0.96230 1.21150 1.00676 0.94631 0.97704 1.21262 0.97971 1.00272 0.94451 1.19795 0.98666 0.94525 0.96834 1.20687 0.94515 1.00217 0.95916 1.21254 0.95548 0.95422 0.87435 1.45898 1.21601 1.53803 1.15848 1.21397 0.80607 0.77971 0.90309 1.90659 1.58206 1.62612 1.35852 1.21640 0.98981 1.00476 0.94759 1.18703 0.91638 0.93970 0.95435 1.21731 1.05465 1.32602 0.98290 0.90439 1.26173 0.97161 0.97468 0.99834 1.70187 1.14369 1.43803 1.29494 0.85289 0.77024 0.78770 0.78952 1.19698 1.21239 1.17826 1.21294 0.99888 0.94508 0.98298 1.21388 0.98248 1.00916 0.94262 0.92825 0.91269 0.92418 0.92656 0.91383 0.92047 0.92479 0.91146 0.93492 0.85114 0.85187 0.88649 0.88645 0.93342 0.93358 0.74380 0.87575 0.87554 1.00067 1.00055 0.92884 0.85185 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.29 71.98 0.60 -0.82 16 2 C -0.03 -0.39 0.85 -52.93 -0.05 -0.44 16 3 C -0.14 -1.54 7.13 71.98 0.51 -1.03 16 4 C -0.14 -1.71 8.29 71.98 0.60 -1.11 16 5 C -0.08 -1.28 4.76 -19.86 -0.09 -1.37 16 6 C -0.12 -2.09 8.71 22.27 0.19 -1.90 16 7 C -0.12 -2.19 9.70 22.27 0.22 -1.97 16 8 C -0.10 -1.80 5.13 -19.87 -0.10 -1.90 16 9 C -0.08 -1.24 5.46 29.85 0.16 -1.08 16 10 C 0.13 3.18 5.66 86.38 0.49 3.67 16 11 N -0.72 -19.25 5.56 -463.07 -2.57 -21.82 16 12 C 0.51 20.08 7.83 87.65 0.69 20.77 16 13 O -0.59 -30.24 15.98 -3.04 -0.05 -30.29 16 14 C -0.12 -4.80 5.64 29.85 0.17 -4.63 16 15 C 0.04 2.28 4.26 29.85 0.13 2.40 16 16 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 17 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 18 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 19 N -0.94 -60.29 13.29 21.45 0.28 -60.01 16 20 Si 0.98 44.59 29.54 68.60 2.03 46.62 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 24 C -0.12 -2.20 9.70 22.27 0.22 -1.98 16 25 C -0.13 -2.22 8.98 22.27 0.20 -2.02 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.60 7.39 -2.39 -0.02 0.58 16 29 H 0.05 0.64 7.52 -2.39 -0.02 0.63 16 30 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.63 7.51 -2.39 -0.02 0.61 16 32 H 0.06 0.70 7.39 -2.39 -0.02 0.68 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.13 1.80 7.10 -2.91 -0.02 1.78 16 36 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.10 1.26 8.08 -2.39 -0.02 1.24 16 38 H 0.10 1.26 8.09 -2.39 -0.02 1.24 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.42 7.69 8.47 -92.71 -0.79 6.90 16 42 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 43 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 44 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 45 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 46 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 47 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 48 H 0.14 1.89 5.90 -2.91 -0.02 1.87 16 Total: -1.00 -78.75 389.73 4.44 -74.31 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.13 Total: 15.63 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 4.62 Total: -24.44 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.29 Total: -81.83 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.05 Total: -30.29 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -78.75 4.44 -74.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292595401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.676 kcal (2) G-P(sol) polarization free energy of solvation -78.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds