Wall clock time and date at job start Tue Mar 31 2020 09:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.53001 * 109.47124 * 119.99716 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00314 * 4 2 1 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99792 * 179.72330 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 C 1.53000 * 109.47415 * 240.00182 * 2 1 3 14 14 N 1.46497 * 109.47302 * 59.99834 * 13 2 1 15 15 C 1.39675 * 120.00105 * 180.02562 * 14 13 2 16 16 C 1.38904 * 120.07506 * 359.71935 * 15 14 13 17 17 C 1.38104 * 119.92697 * 179.76988 * 16 15 14 18 18 C 1.38290 * 120.07209 * 0.51238 * 17 16 15 19 19 C 1.50697 * 119.92686 * 179.72411 * 18 17 16 20 20 H 1.08998 * 110.80841 * 183.64858 * 19 18 17 21 21 C 1.54805 * 110.90773 * 60.01472 * 19 18 17 22 22 C 1.54100 * 104.18995 * 220.92130 * 21 19 18 23 23 O 1.43744 * 107.29512 * 357.97472 * 22 21 19 24 24 C 1.44388 * 106.97184 * 26.51244 * 23 22 21 25 25 C 1.38283 * 120.14780 * 359.74079 * 18 17 16 26 26 C 1.38104 * 120.07515 * 0.02562 * 25 18 17 27 27 H 1.08998 * 109.47544 * 299.99703 * 1 2 3 28 28 H 1.09005 * 109.47089 * 60.00233 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47095 * 299.99872 * 3 2 1 32 32 H 1.09007 * 109.47356 * 59.99868 * 3 2 1 33 33 H 1.08998 * 109.46837 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46926 * 60.00139 * 4 2 1 35 35 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46966 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.46807 * 299.99967 * 13 2 1 38 38 H 0.97010 * 120.00015 * 0.02562 * 14 13 2 39 39 H 1.08006 * 120.03885 * 0.02562 * 16 15 14 40 40 H 1.07995 * 119.96620 * 180.25158 * 17 16 15 41 41 H 1.09000 * 110.49332 * 339.60007 * 21 19 18 42 42 H 1.09003 * 110.48911 * 102.25061 * 21 19 18 43 43 H 1.09005 * 109.88040 * 117.39800 * 22 21 19 44 44 H 1.08995 * 109.88322 * 238.54663 * 22 21 19 45 45 H 1.08996 * 110.61478 * 201.43979 * 24 23 22 46 46 H 1.08991 * 110.61576 * 78.44020 * 24 23 22 47 47 H 1.08006 * 119.96396 * 180.02562 * 25 18 17 48 48 H 1.08002 * 120.03673 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 1.4364 0.1410 4.8058 9 14 2.9443 -2.0009 3.9034 10 1 4.3720 -1.5949 3.9494 11 1 2.5927 -2.7170 5.1559 12 1 2.7220 -2.8981 2.7411 13 6 2.0401 -0.7212 -1.2492 14 7 1.5518 -0.0306 -2.4454 15 6 1.8888 -0.5081 -3.7140 16 6 2.6917 -1.6342 -3.8432 17 6 3.0192 -2.1065 -5.0990 18 6 2.5574 -1.4533 -6.2271 19 6 2.9219 -1.9679 -7.5958 20 1 2.5351 -1.3087 -8.3730 21 6 2.4121 -3.4159 -7.7955 22 6 3.5658 -4.1245 -8.5314 23 8 4.5919 -3.1444 -8.7612 24 6 4.4561 -2.1424 -7.7306 25 6 1.7622 -0.3290 -6.1020 26 6 1.4271 0.1458 -4.8492 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2493 35 1 1.6701 -0.1909 5.6868 36 1 3.1301 -0.7208 -1.2494 37 1 1.6767 -1.7489 -1.2492 38 1 0.9943 0.7583 -2.3564 39 1 3.0562 -2.1423 -2.9626 40 1 3.6401 -2.9843 -5.2002 41 1 2.2252 -3.8908 -6.8324 42 1 1.5094 -3.4217 -8.4064 43 1 3.9575 -4.9334 -7.9146 44 1 3.2110 -4.5198 -9.4831 45 1 4.9230 -1.2075 -8.0404 46 1 4.8861 -2.4952 -6.7933 47 1 1.4029 0.1786 -6.9851 48 1 0.8063 1.0242 -4.7522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293070070.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:06 Heat of formation + Delta-G solvation = -40.353406 kcal Electronic energy + Delta-G solvation = -24369.006007 eV Core-core repulsion = 21001.707145 eV Total energy + Delta-G solvation = -3367.298862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.24184 -39.02755 -37.56251 -34.79422 -32.72650 -31.97296 -30.90949 -29.91690 -28.23773 -27.38403 -26.57998 -25.72017 -23.45628 -22.86054 -22.46491 -21.41836 -20.29262 -18.32261 -17.34451 -16.90577 -16.69547 -16.36701 -15.64368 -15.14510 -14.78496 -14.52946 -14.27048 -14.15106 -13.73204 -13.52498 -13.38270 -13.26661 -13.17300 -12.74913 -12.59627 -12.48515 -12.27896 -11.78426 -11.67771 -11.29845 -11.24415 -11.14451 -11.11701 -11.02081 -10.76254 -10.65816 -10.48045 -10.07089 -9.95462 -9.80638 -9.65375 -9.55625 -9.03605 -8.90761 -8.57673 -7.21309 -6.07962 -4.05384 1.45841 1.58867 3.27025 3.35365 3.37520 3.63144 3.67521 3.85218 4.41191 4.42014 4.48503 4.73501 4.81290 4.91563 4.97621 5.04236 5.13876 5.24170 5.30429 5.39853 5.43027 5.45913 5.46281 5.54976 5.60400 5.63807 5.69205 5.76690 5.88075 6.01394 6.03263 6.06608 6.14091 6.28629 6.36255 6.42616 6.53104 6.56522 6.59052 6.67881 6.82168 6.92217 6.97936 7.01429 7.14185 7.31378 7.48434 7.74655 7.89496 8.49250 8.96273 9.54363 11.04859 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.002573 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.350543 B =10877.997564 C =11603.739729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.129 3.871 14 N -0.737 5.737 15 C 0.227 3.773 16 C -0.198 4.198 17 C -0.065 4.065 18 C -0.151 4.151 19 C -0.068 4.068 20 H 0.087 0.913 21 C -0.150 4.150 22 C 0.046 3.954 23 O -0.382 6.382 24 C 0.052 3.948 25 C -0.063 4.063 26 C -0.202 4.202 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.013 0.987 34 H 0.017 0.983 35 H 0.263 0.737 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.399 0.601 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.116 0.884 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -4.190 -24.686 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.061 4.061 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.005 3.995 14 N -0.364 5.364 15 C 0.121 3.879 16 C -0.221 4.221 17 C -0.083 4.083 18 C -0.153 4.153 19 C -0.087 4.087 20 H 0.105 0.895 21 C -0.188 4.188 22 C -0.031 4.031 23 O -0.301 6.301 24 C -0.024 4.024 25 C -0.082 4.082 26 C -0.225 4.225 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.235 0.765 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.134 0.866 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.951 -4.310 -24.457 24.910 hybrid contribution 0.169 -0.541 0.598 0.824 sum 2.119 -4.851 -23.858 24.438 Atomic orbital electron populations 1.21757 0.94815 1.01172 1.00761 1.20640 0.95820 0.95873 0.93779 1.21762 1.00339 0.95669 1.00766 1.19594 0.95809 0.95806 0.92758 1.21075 1.31960 1.13267 0.88618 0.90433 1.25016 0.95766 0.96739 0.95992 1.69905 1.46058 1.40364 0.97895 0.86842 0.81167 0.84007 0.77629 1.20376 1.21479 1.19086 1.21614 0.98076 0.95770 0.84010 1.45031 1.56495 1.32616 1.02293 1.17944 0.92165 0.92232 0.85562 1.20657 1.04623 0.98954 0.97835 1.20647 0.97797 0.98373 0.91524 1.19167 1.04134 0.98660 0.93355 1.21492 0.95674 0.96332 0.95170 0.89467 1.23081 0.98875 0.95176 1.01671 1.23176 0.87820 0.91806 1.00329 1.88861 1.53486 1.36671 1.51096 1.23737 0.94999 0.92131 0.91579 1.20667 0.96107 0.94954 0.96462 1.20540 1.07356 1.03155 0.91435 0.90986 0.94948 0.93505 0.93496 0.94947 0.90987 0.96909 0.96462 0.92769 0.92640 0.92647 0.76453 0.86060 0.86694 0.90175 0.90494 0.92445 0.90037 0.88917 0.91728 0.86597 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.06 -1.08 0.54 -154.51 -0.08 -1.16 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 5 C -0.51 -13.53 8.20 -34.44 -0.28 -13.81 16 6 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 9 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.13 1.97 3.80 -4.04 -0.02 1.96 16 14 N -0.74 -9.89 5.14 -58.64 -0.30 -10.20 16 15 C 0.23 2.94 6.65 -83.79 -0.56 2.38 16 16 C -0.20 -2.49 9.31 -39.38 -0.37 -2.86 16 17 C -0.06 -0.71 8.19 -39.61 -0.32 -1.03 16 18 C -0.15 -1.54 4.95 -104.59 -0.52 -2.06 16 19 C -0.07 -0.59 3.34 -89.77 -0.30 -0.89 16 20 H 0.09 0.70 7.95 -51.93 -0.41 0.29 16 21 C -0.15 -1.17 6.50 -25.21 -0.16 -1.33 16 22 C 0.05 0.36 7.70 37.73 0.29 0.65 16 23 O -0.38 -3.99 11.52 -35.23 -0.41 -4.40 16 24 C 0.05 0.47 7.10 38.21 0.27 0.74 16 25 C -0.06 -0.66 9.68 -39.61 -0.38 -1.04 16 26 C -0.20 -2.33 9.90 -39.38 -0.39 -2.72 16 27 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 28 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 32 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 33 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 34 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 37 H 0.06 0.86 7.96 -51.93 -0.41 0.44 16 38 H 0.40 5.08 6.18 -40.82 -0.25 4.82 16 39 H 0.12 1.53 6.74 -52.48 -0.35 1.17 16 40 H 0.12 1.09 7.23 -52.49 -0.38 0.71 16 41 H 0.08 0.64 7.21 -51.93 -0.37 0.27 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.58 6.69 -51.93 -0.35 0.23 16 47 H 0.12 0.97 7.98 -52.48 -0.42 0.55 16 48 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -29.11 368.11 -9.43 -38.54 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.97 Total: 3.67 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -2.41 Total: -23.37 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.47 Total: -36.43 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.41 Total: -4.40 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.11 -9.43 -38.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293070070.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.811 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds