Wall clock time and date at job start Tue Mar 31 2020 09:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.53001 * 109.47124 * 119.99716 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00314 * 4 2 1 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99792 * 179.72330 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 C 1.53000 * 109.47415 * 240.00182 * 2 1 3 14 14 N 1.46497 * 109.47302 * 59.99834 * 13 2 1 15 15 C 1.39675 * 120.00105 * 180.02562 * 14 13 2 16 16 C 1.38904 * 120.07506 * 359.71935 * 15 14 13 17 17 C 1.38104 * 119.92697 * 179.76988 * 16 15 14 18 18 C 1.38290 * 120.07209 * 0.51238 * 17 16 15 19 19 C 1.50697 * 119.92686 * 179.72411 * 18 17 16 20 20 H 1.08998 * 110.80841 * 183.64858 * 19 18 17 21 21 C 1.54805 * 110.90773 * 60.01472 * 19 18 17 22 22 C 1.54100 * 104.18995 * 220.92130 * 21 19 18 23 23 O 1.43744 * 107.29512 * 357.97472 * 22 21 19 24 24 C 1.44388 * 106.97184 * 26.51244 * 23 22 21 25 25 C 1.38283 * 120.14780 * 359.74079 * 18 17 16 26 26 C 1.38104 * 120.07515 * 0.02562 * 25 18 17 27 27 H 1.08998 * 109.47544 * 299.99703 * 1 2 3 28 28 H 1.09005 * 109.47089 * 60.00233 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47095 * 299.99872 * 3 2 1 32 32 H 1.09007 * 109.47356 * 59.99868 * 3 2 1 33 33 H 1.08998 * 109.46837 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46926 * 60.00139 * 4 2 1 35 35 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46966 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.46807 * 299.99967 * 13 2 1 38 38 H 0.97010 * 120.00015 * 0.02562 * 14 13 2 39 39 H 1.08006 * 120.03885 * 0.02562 * 16 15 14 40 40 H 1.07995 * 119.96620 * 180.25158 * 17 16 15 41 41 H 1.09000 * 110.49332 * 339.60007 * 21 19 18 42 42 H 1.09003 * 110.48911 * 102.25061 * 21 19 18 43 43 H 1.09005 * 109.88040 * 117.39800 * 22 21 19 44 44 H 1.08995 * 109.88322 * 238.54663 * 22 21 19 45 45 H 1.08996 * 110.61478 * 201.43979 * 24 23 22 46 46 H 1.08991 * 110.61576 * 78.44020 * 24 23 22 47 47 H 1.08006 * 119.96396 * 180.02562 * 25 18 17 48 48 H 1.08002 * 120.03673 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 1.4364 0.1410 4.8058 9 14 2.9443 -2.0009 3.9034 10 1 4.3720 -1.5949 3.9494 11 1 2.5927 -2.7170 5.1559 12 1 2.7220 -2.8981 2.7411 13 6 2.0401 -0.7212 -1.2492 14 7 1.5518 -0.0306 -2.4454 15 6 1.8888 -0.5081 -3.7140 16 6 2.6917 -1.6342 -3.8432 17 6 3.0192 -2.1065 -5.0990 18 6 2.5574 -1.4533 -6.2271 19 6 2.9219 -1.9679 -7.5958 20 1 2.5351 -1.3087 -8.3730 21 6 2.4121 -3.4159 -7.7955 22 6 3.5658 -4.1245 -8.5314 23 8 4.5919 -3.1444 -8.7612 24 6 4.4561 -2.1424 -7.7306 25 6 1.7622 -0.3290 -6.1020 26 6 1.4271 0.1458 -4.8492 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2493 35 1 1.6701 -0.1909 5.6868 36 1 3.1301 -0.7208 -1.2494 37 1 1.6767 -1.7489 -1.2492 38 1 0.9943 0.7583 -2.3564 39 1 3.0562 -2.1423 -2.9626 40 1 3.6401 -2.9843 -5.2002 41 1 2.2252 -3.8908 -6.8324 42 1 1.5094 -3.4217 -8.4064 43 1 3.9575 -4.9334 -7.9146 44 1 3.2110 -4.5198 -9.4831 45 1 4.9230 -1.2075 -8.0404 46 1 4.8861 -2.4952 -6.7933 47 1 1.4029 0.1786 -6.9851 48 1 0.8063 1.0242 -4.7522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293070070.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:05 Heat of formation + Delta-G solvation = -55.804169 kcal Electronic energy + Delta-G solvation = -24369.676002 eV Core-core repulsion = 21001.707145 eV Total energy + Delta-G solvation = -3367.968857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.01792 -39.95101 -38.78697 -35.92725 -34.42286 -33.11852 -31.75364 -30.69146 -29.76197 -28.55615 -28.01636 -26.91032 -24.43051 -24.23329 -23.23087 -22.45472 -21.06912 -19.70775 -18.91189 -18.32743 -17.39129 -17.20094 -16.63074 -16.18662 -15.88098 -15.81137 -15.58306 -15.37476 -14.84480 -14.53721 -14.42043 -14.34941 -14.18250 -14.06719 -14.03034 -13.68577 -13.24494 -12.99843 -12.83152 -12.72263 -12.41687 -12.33049 -12.26389 -12.20871 -11.97523 -11.83778 -11.75111 -11.52627 -11.42313 -11.16366 -10.90651 -10.71689 -10.69120 -10.58022 -9.75423 -8.23200 -8.16067 -6.23905 0.60713 0.72824 1.35994 1.38001 1.48196 2.38483 2.60187 2.93570 3.08718 3.12156 3.77896 3.82055 3.93310 4.06517 4.07425 4.08317 4.18248 4.20403 4.23630 4.37992 4.44184 4.59819 4.62811 4.69892 4.72923 4.75121 4.86553 4.86893 4.90394 4.94090 4.96135 5.04558 5.06677 5.10797 5.18798 5.24021 5.29318 5.37513 5.38689 5.50435 5.53277 5.57901 5.67100 5.75332 5.85853 5.93971 6.04637 6.36191 6.50693 6.83307 6.92085 7.38772 8.92698 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.002573 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.350543 B =10877.997564 C =11603.739729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.057 4.057 3 C -0.122 4.122 4 C -0.002 4.002 5 C -0.504 4.504 6 H 0.047 0.953 7 C 0.002 3.998 8 N -0.953 5.953 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.247 1.247 13 C 0.145 3.855 14 N -0.738 5.738 15 C 0.208 3.792 16 C -0.213 4.213 17 C -0.069 4.069 18 C -0.144 4.144 19 C -0.065 4.065 20 H 0.097 0.903 21 C -0.147 4.147 22 C 0.041 3.959 23 O -0.403 6.403 24 C 0.050 3.950 25 C -0.066 4.066 26 C -0.205 4.205 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.262 0.738 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.403 0.597 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.062 0.938 47 H 0.139 0.861 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 -5.221 -27.668 28.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.180 4.180 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.065 0.935 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.764 3.236 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.171 1.171 13 C 0.021 3.979 14 N -0.367 5.367 15 C 0.104 3.896 16 C -0.236 4.236 17 C -0.087 4.087 18 C -0.147 4.147 19 C -0.084 4.084 20 H 0.115 0.885 21 C -0.184 4.184 22 C -0.035 4.035 23 O -0.323 6.323 24 C -0.027 4.027 25 C -0.085 4.085 26 C -0.228 4.228 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.239 0.761 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.157 0.843 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.400 -5.347 -27.484 28.102 hybrid contribution -0.003 -0.172 1.413 1.424 sum 2.397 -5.519 -26.071 26.756 Atomic orbital electron populations 1.21672 0.94510 1.01059 1.00680 1.20511 0.96027 0.95879 0.93307 1.21677 1.00202 0.95397 1.00679 1.19564 0.95825 0.95691 0.92942 1.21385 1.30340 1.12137 0.90337 0.93532 1.25911 0.97583 1.00139 0.95811 1.70060 1.48395 1.42587 0.98476 0.85824 0.79355 0.80433 0.78031 1.19658 1.21628 1.17053 1.21257 0.97886 0.95352 0.83450 1.44802 1.57143 1.32843 1.01924 1.18092 0.93102 0.92871 0.85549 1.20762 1.05180 0.99286 0.98365 1.20807 0.97865 0.98807 0.91264 1.19372 1.03198 0.98244 0.93859 1.21495 0.95449 0.97016 0.94432 0.88478 1.23063 0.99223 0.94428 1.01722 1.23319 0.87455 0.91518 1.01231 1.88842 1.54434 1.37383 1.51618 1.23787 0.95351 0.92203 0.91318 1.20976 0.95684 0.94901 0.96921 1.20754 1.07217 1.03414 0.91373 0.94099 0.91947 0.93599 0.93584 0.91949 0.94109 0.96610 0.96422 0.92887 0.92698 0.92738 0.76079 0.86616 0.85610 0.90495 0.89325 0.92024 0.88755 0.88366 0.91947 0.84315 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 2 C -0.06 -1.98 0.54 -52.18 -0.03 -2.01 16 3 C -0.12 -4.17 8.05 71.98 0.58 -3.59 16 4 C 0.00 -0.10 3.11 29.85 0.09 -0.01 16 5 C -0.50 -27.31 8.20 25.60 0.21 -27.10 16 6 H 0.05 2.76 5.92 -2.91 -0.02 2.74 16 7 C 0.00 0.09 5.47 84.66 0.46 0.55 16 8 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 9 Si 0.94 43.65 27.47 68.60 1.88 45.53 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 13 C 0.15 4.19 3.80 86.38 0.33 4.52 16 14 N -0.74 -18.29 5.14 -339.43 -1.74 -20.03 16 15 C 0.21 4.96 6.65 38.21 0.25 5.21 16 16 C -0.21 -5.01 9.31 22.40 0.21 -4.80 16 17 C -0.07 -1.37 8.19 22.25 0.18 -1.19 16 18 C -0.14 -2.57 4.95 -19.84 -0.10 -2.66 16 19 C -0.07 -0.95 3.34 -10.24 -0.03 -0.98 16 20 H 0.10 1.24 7.95 -2.39 -0.02 1.22 16 21 C -0.15 -1.90 6.50 31.58 0.21 -1.69 16 22 C 0.04 0.57 7.70 72.35 0.56 1.12 16 23 O -0.40 -7.67 11.52 -148.98 -1.72 -9.39 16 24 C 0.05 0.79 7.10 72.67 0.52 1.31 16 25 C -0.07 -1.18 9.68 22.25 0.22 -0.96 16 26 C -0.20 -4.18 9.90 22.40 0.22 -3.96 16 27 H 0.04 1.63 6.62 -2.39 -0.02 1.62 16 28 H 0.06 1.73 6.86 -2.38 -0.02 1.71 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.73 6.86 -2.39 -0.02 1.71 16 32 H 0.04 1.63 6.62 -2.38 -0.02 1.61 16 33 H 0.02 0.68 7.57 -2.39 -0.02 0.66 16 34 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.05 1.60 7.94 -2.39 -0.02 1.58 16 37 H 0.05 1.59 7.96 -2.39 -0.02 1.57 16 38 H 0.40 9.24 6.18 -92.70 -0.57 8.67 16 39 H 0.12 2.78 6.74 -2.91 -0.02 2.76 16 40 H 0.13 2.15 7.23 -2.91 -0.02 2.13 16 41 H 0.08 1.05 7.21 -2.39 -0.02 1.03 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.01 6.69 -2.39 -0.02 0.99 16 47 H 0.14 1.80 7.98 -2.91 -0.02 1.77 16 48 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -63.60 368.11 3.49 -60.11 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.31 Total: 22.22 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 4.45 Total: -39.81 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -1.44 Total: -78.66 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -1.72 Total: -9.39 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -63.60 3.49 -60.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293070070.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.309 kcal (2) G-P(sol) polarization free energy of solvation -63.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds