Wall clock time and date at job start Tue Mar 31 2020 08:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46859 * 2 1 4 4 C 1.52998 * 109.47114 * 65.00067 * 3 2 1 5 5 C 1.53003 * 109.46903 * 182.91009 * 4 3 2 6 6 C 1.53003 * 109.47037 * 184.99659 * 3 2 1 7 7 N 1.46503 * 109.46796 * 65.16207 * 6 3 2 8 8 C 1.46506 * 119.99547 * 83.46694 * 7 6 3 9 9 C 1.52996 * 109.47530 * 75.04180 * 8 7 6 10 10 C 1.34771 * 120.00120 * 263.46268 * 7 6 3 11 11 O 1.21542 * 120.00154 * 6.73609 * 10 7 6 12 12 C 1.47891 * 119.99984 * 186.73945 * 10 7 6 13 13 C 1.39922 * 120.02253 * 49.27256 * 12 10 7 14 14 C 1.38330 * 120.35478 * 179.74161 * 13 12 10 15 15 C 1.37752 * 120.41617 * 0.56560 * 14 13 12 16 16 C 1.40763 * 120.03565 * 359.69512 * 15 14 13 17 17 C 1.41434 * 120.17649 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99957 * 31.01475 * 17 16 15 19 19 C 1.39934 * 119.99563 * 211.01936 * 17 16 15 20 20 N 1.30829 * 120.00575 * 8.30990 * 19 17 16 21 21 Si 1.86806 * 120.00035 * 188.30754 * 19 17 16 22 22 H 1.48496 * 109.46724 * 59.99966 * 21 19 17 23 23 H 1.48494 * 109.47214 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47021 * 300.00322 * 21 19 17 25 25 C 1.38994 * 120.02648 * 229.55877 * 12 10 7 26 26 H 1.09002 * 109.47065 * 60.00519 * 1 2 3 27 27 H 1.09004 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47364 * 300.00146 * 1 2 3 29 29 H 1.09002 * 109.47364 * 239.99854 * 2 1 3 30 30 H 1.09002 * 109.47065 * 119.99481 * 2 1 3 31 31 H 1.08995 * 109.47093 * 304.99962 * 3 2 1 32 32 H 1.09006 * 109.47217 * 302.90326 * 4 3 2 33 33 H 1.09000 * 109.47593 * 62.91178 * 4 3 2 34 34 H 1.08995 * 109.47081 * 294.33278 * 5 4 3 35 35 H 1.08996 * 109.46983 * 54.33556 * 5 4 3 36 36 H 1.09003 * 109.46834 * 174.33262 * 5 4 3 37 37 H 1.09000 * 109.47222 * 185.16312 * 6 3 2 38 38 H 1.09000 * 109.47335 * 305.16677 * 6 3 2 39 39 H 1.09001 * 109.46549 * 195.04420 * 8 7 6 40 40 H 1.08995 * 109.47070 * 315.03586 * 8 7 6 41 41 H 1.08991 * 109.47150 * 154.74983 * 9 8 7 42 42 H 1.09000 * 109.46926 * 274.75546 * 9 8 7 43 43 H 1.09003 * 109.46992 * 34.75024 * 9 8 7 44 44 H 1.07998 * 119.82359 * 0.02562 * 13 12 10 45 45 H 1.08004 * 119.79350 * 180.28301 * 14 13 12 46 46 H 1.07992 * 119.98532 * 179.72182 * 15 14 13 47 47 H 0.96998 * 120.00257 * 179.97438 * 20 19 17 48 48 H 1.08003 * 120.20036 * 359.94865 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0817 3.5897 1.2769 6 6 3.5648 1.4444 -0.1256 7 7 3.9478 0.9014 -1.4313 8 6 3.9579 1.7698 -2.6113 9 6 5.1807 2.6877 -2.5587 10 6 4.2909 -0.3967 -1.5469 11 8 4.1659 -1.1453 -0.5976 12 6 4.8197 -0.9104 -2.8290 13 6 5.8544 -0.2315 -3.4819 14 6 6.3577 -0.7089 -4.6787 15 6 5.8388 -1.8512 -5.2474 16 6 4.7940 -2.5446 -4.6079 17 6 4.2593 -3.7180 -5.1890 18 1 4.8902 -4.3616 -5.7841 19 6 2.9129 -4.0449 -4.9928 20 7 2.1099 -3.1902 -4.4128 21 14 2.2619 -5.7017 -5.5591 22 1 2.9995 -6.7871 -4.8642 23 1 0.8157 -5.8016 -5.2370 24 1 2.4531 -5.8336 -7.0259 25 6 4.2851 -2.0647 -3.3892 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6053 1.9815 -0.8418 32 1 0.5522 2.0796 1.4218 33 1 2.1116 1.6187 2.1459 34 1 3.1706 3.6370 1.2638 35 1 1.6863 4.0717 0.3829 36 1 1.7064 4.1026 2.1624 37 1 3.9357 2.4652 -0.0336 38 1 3.9953 0.8288 0.6642 39 1 4.0014 1.1578 -3.5122 40 1 3.0506 2.3736 -2.6258 41 1 5.4493 2.9934 -3.5698 42 1 4.9475 3.5698 -1.9622 43 1 6.0165 2.1539 -2.1063 44 1 6.2653 0.6675 -3.0469 45 1 7.1596 -0.1802 -5.1726 46 1 6.2340 -2.2151 -6.1842 47 1 1.1766 -3.4166 -4.2772 48 1 3.4838 -2.5898 -2.8906 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298646081.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:35 Heat of formation + Delta-G solvation = -42.261016 kcal Electronic energy + Delta-G solvation = -25900.663329 eV Core-core repulsion = 22533.281747 eV Total energy + Delta-G solvation = -3367.381582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.80353 -37.51333 -36.55861 -35.14611 -33.60045 -31.65353 -30.63357 -30.05966 -29.46475 -27.69056 -25.34026 -24.52035 -23.14836 -22.49963 -21.66959 -20.95973 -19.58508 -18.61331 -17.43284 -16.25445 -16.00630 -15.18144 -15.01026 -14.90127 -14.38659 -14.15269 -13.97897 -13.73138 -13.43857 -13.21793 -13.00835 -12.75562 -12.58879 -12.46840 -12.16924 -11.86815 -11.76574 -11.64060 -11.60124 -11.25437 -11.20442 -11.12341 -11.02679 -10.82294 -10.61657 -10.53596 -10.41360 -10.23481 -10.13430 -10.03156 -9.66399 -9.25321 -8.92926 -8.19203 -7.57080 -7.42029 -6.72624 -4.42994 2.39046 2.83860 3.08111 3.10517 3.15928 3.47028 3.70909 3.94439 4.62531 4.85010 4.92765 4.99892 5.21239 5.24229 5.33344 5.47504 5.49900 5.55395 5.58380 5.67385 5.72295 5.74843 5.77544 5.87251 5.92754 5.98598 6.04918 6.08627 6.14124 6.19687 6.25701 6.29644 6.31910 6.40945 6.48485 6.60848 6.70263 6.78489 6.99992 7.00490 7.11106 7.24172 7.40926 7.69828 7.82085 7.89333 8.02771 8.18387 8.51883 8.83765 8.84695 8.90628 10.22283 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.004815 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.394231 B = 5814.314943 C = 7276.157306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.101 4.101 4 C -0.118 4.118 5 C -0.153 4.153 6 C 0.119 3.881 7 N -0.612 5.612 8 C 0.105 3.895 9 C -0.167 4.167 10 C 0.572 3.428 11 O -0.544 6.544 12 C -0.123 4.123 13 C -0.211 4.211 14 C -0.103 4.103 15 C -0.206 4.206 16 C 0.103 3.897 17 C -0.465 4.465 18 H 0.078 0.922 19 C 0.073 3.927 20 N -0.804 5.804 21 Si 0.912 3.088 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.266 1.266 25 C -0.096 4.096 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.281 0.719 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 11.590 6.049 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.120 4.120 4 C -0.156 4.156 5 C -0.211 4.211 6 C -0.004 4.004 7 N -0.345 5.345 8 C -0.019 4.019 9 C -0.225 4.225 10 C 0.363 3.637 11 O -0.422 6.422 12 C -0.126 4.126 13 C -0.231 4.231 14 C -0.121 4.121 15 C -0.226 4.226 16 C 0.101 3.899 17 C -0.495 4.495 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.430 5.430 21 Si 0.737 3.263 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.191 1.191 25 C -0.116 4.116 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.092 0.908 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.946 11.212 6.624 13.167 hybrid contribution -0.416 -0.569 -0.385 0.804 sum -2.363 10.643 6.239 12.561 Atomic orbital electron populations 1.21809 0.96680 1.01291 1.00893 1.21515 0.94752 0.95595 1.03325 1.21590 0.95964 0.96929 0.97551 1.21575 1.01185 0.95319 0.97560 1.21836 1.01339 0.96544 1.01347 1.21485 0.94280 0.98654 0.85948 1.47894 1.68232 1.09790 1.08591 1.21593 0.97395 0.93346 0.89518 1.22274 0.98907 0.99265 1.02051 1.18944 0.75518 0.80631 0.88622 1.90683 1.54525 1.56206 1.40780 1.19465 1.00105 0.98592 0.94452 1.20608 1.02084 1.01984 0.98428 1.20455 0.99010 0.96898 0.95740 1.21185 1.03561 0.97567 1.00304 1.17561 0.90267 0.92078 0.90028 1.19514 0.94785 1.06523 1.28641 0.90361 1.25870 0.97022 0.98045 0.93379 1.69731 1.05995 1.34292 1.32945 0.86299 0.78002 0.82115 0.79899 1.18867 1.20335 1.19053 1.21493 1.00724 0.94384 0.94962 0.93194 0.93047 0.93223 0.91028 0.92061 0.91371 0.91702 0.91986 0.92635 0.92818 0.93101 0.91207 0.90173 0.88293 0.91843 0.91683 0.93275 0.91829 0.88227 0.88948 0.88669 0.90793 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.82 4.51 -26.73 -0.12 -1.94 16 3 C -0.10 -1.33 2.08 -90.62 -0.19 -1.52 16 4 C -0.12 -1.27 5.25 -26.73 -0.14 -1.41 16 5 C -0.15 -1.39 9.48 37.16 0.35 -1.04 16 6 C 0.12 1.70 4.73 -4.04 -0.02 1.69 16 7 N -0.61 -10.35 2.25 -174.78 -0.39 -10.74 16 8 C 0.10 1.55 5.64 -4.04 -0.02 1.52 16 9 C -0.17 -2.04 8.88 37.16 0.33 -1.71 16 10 C 0.57 12.29 6.00 -12.31 -0.07 12.21 16 11 O -0.54 -13.08 15.13 5.33 0.08 -13.00 16 12 C -0.12 -2.85 4.65 -105.03 -0.49 -3.34 16 13 C -0.21 -4.40 7.75 -38.92 -0.30 -4.70 16 14 C -0.10 -2.16 10.01 -39.73 -0.40 -2.56 16 15 C -0.21 -4.85 9.78 -38.81 -0.38 -5.23 16 16 C 0.10 2.69 5.53 -106.87 -0.59 2.10 16 17 C -0.46 -12.19 9.06 -37.73 -0.34 -12.53 16 18 H 0.08 1.96 7.86 -52.49 -0.41 1.55 16 19 C 0.07 1.85 5.28 -17.34 -0.09 1.75 16 20 N -0.80 -20.87 10.87 55.55 0.60 -20.27 16 21 Si 0.91 18.91 29.57 -169.99 -5.03 13.88 16 22 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 C -0.10 -2.50 8.31 -38.44 -0.32 -2.82 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.58 6.50 -51.93 -0.34 0.24 16 29 H 0.07 1.42 6.03 -51.93 -0.31 1.11 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.49 6.68 -51.93 -0.35 0.14 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 38 H 0.08 1.28 7.33 -51.93 -0.38 0.90 16 39 H 0.10 1.72 5.66 -51.93 -0.29 1.43 16 40 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.86 6.54 -51.93 -0.34 0.52 16 44 H 0.10 1.82 4.92 -52.49 -0.26 1.56 16 45 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 46 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 47 H 0.28 6.76 8.30 -40.82 -0.34 6.43 16 48 H 0.13 3.58 6.31 -52.48 -0.33 3.25 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -28.00 371.46 -9.42 -37.42 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.85 Total: 8.31 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -2.43 Total: -21.21 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.21 Total: -31.01 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.00 -9.42 -37.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298646081.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.837 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds