Wall clock time and date at job start Tue Mar 31 2020 08:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.46682 * 2 1 4 4 C 1.38226 * 120.00025 * 89.99868 * 3 2 1 5 5 C 1.38243 * 120.00073 * 179.97438 * 4 3 2 6 6 C 1.38227 * 119.99779 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.99742 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.50460 * 340.08090 * 7 6 5 9 9 C 1.53094 * 109.50753 * 100.21677 * 7 6 5 10 10 N 1.47020 * 109.25318 * 176.78342 * 9 7 6 11 11 C 1.46899 * 110.99333 * 177.60517 * 10 9 7 12 12 H 1.08998 * 109.47429 * 304.17850 * 11 10 9 13 13 C 1.52999 * 109.47472 * 64.18160 * 11 10 9 14 14 C 1.53006 * 109.46863 * 184.18045 * 11 10 9 15 15 C 1.50691 * 109.47244 * 62.56214 * 14 11 10 16 16 H 1.08004 * 120.00161 * 5.20230 * 15 14 11 17 17 C 1.37880 * 119.99894 * 185.20302 * 15 14 11 18 18 N 1.31510 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00010 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46804 * 89.99713 * 19 17 15 21 21 H 1.48497 * 109.47159 * 209.99861 * 19 17 15 22 22 H 1.48502 * 109.47129 * 330.00110 * 19 17 15 23 23 C 1.47004 * 110.75270 * 301.37892 * 10 9 7 24 24 C 1.53096 * 109.26025 * 58.62044 * 23 10 9 25 25 O 1.43015 * 109.25978 * 303.15099 * 24 23 10 26 26 C 1.38233 * 120.00162 * 0.24989 * 6 5 4 27 27 C 1.38231 * 119.99843 * 359.49644 * 26 6 5 28 28 H 1.09007 * 109.46558 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47618 * 300.00159 * 1 2 3 30 30 H 1.09002 * 109.47233 * 60.00376 * 1 2 3 31 31 H 1.08995 * 109.47273 * 240.00217 * 2 1 3 32 32 H 1.08992 * 109.47130 * 119.99692 * 2 1 3 33 33 H 1.08005 * 120.00448 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.99512 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.50253 * 296.71270 * 9 7 6 36 36 H 1.08996 * 109.50942 * 56.84728 * 9 7 6 37 37 H 1.08998 * 109.47748 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.46917 * 299.99589 * 13 11 10 39 39 H 1.08998 * 109.47046 * 59.99456 * 13 11 10 40 40 H 1.09000 * 109.46858 * 182.56754 * 14 11 10 41 41 H 1.09009 * 109.46809 * 302.56055 * 14 11 10 42 42 H 0.97001 * 119.99764 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.50843 * 298.68787 * 23 10 9 44 44 H 1.09002 * 109.54276 * 178.57870 * 23 10 9 45 45 H 1.08997 * 109.50864 * 183.21565 * 24 23 10 46 46 H 1.09004 * 109.54159 * 63.10318 * 24 23 10 47 47 H 1.08002 * 120.00061 * 179.72662 * 26 6 5 48 48 H 1.08004 * 119.99904 * 180.25047 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7238 3.3758 1.1971 6 6 2.9541 4.0273 0.0000 7 6 3.4564 5.4482 0.0000 8 1 3.2476 5.9080 0.9660 9 6 4.9657 5.4570 -0.2559 10 7 5.4366 6.8477 -0.3315 11 6 6.8925 6.9008 -0.5201 12 1 7.3830 6.3461 0.2797 13 6 7.2551 6.2778 -1.8696 14 6 7.3577 8.3581 -0.4896 15 6 7.0572 8.9533 0.8618 16 1 6.6595 8.3307 1.6497 17 6 7.2899 10.2926 1.0924 18 7 7.7737 11.0507 0.1329 19 14 6.9167 11.0305 2.7675 20 1 8.1191 10.9272 3.6328 21 1 6.5434 12.4588 2.6071 22 1 5.7910 10.2919 3.3941 23 6 4.7398 7.5761 -1.4015 24 6 3.2326 7.5461 -1.1342 25 8 2.7985 6.1873 -1.0328 26 6 2.7184 3.3776 -1.1971 27 6 2.2622 2.0727 -1.1971 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 2.0822 1.5636 2.1325 34 1 2.9041 3.8847 2.1324 35 1 5.4760 4.9437 0.5591 36 1 5.1784 4.9490 -1.1965 37 1 8.3353 6.3177 -2.0098 38 1 6.9237 5.2397 -1.8913 39 1 6.7646 6.8326 -2.6694 40 1 8.4310 8.4008 -0.6750 41 1 6.8332 8.9231 -1.2603 42 1 7.9377 11.9928 0.2953 43 1 4.9488 7.1020 -2.3605 44 1 5.0850 8.6097 -1.4236 45 1 2.7077 8.0356 -1.9545 46 1 3.0173 8.0676 -0.2015 47 1 2.8942 3.8882 -2.1325 48 1 2.0819 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298656816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:01 Heat of formation + Delta-G solvation = -45.141608 kcal Electronic energy + Delta-G solvation = -25179.752372 eV Core-core repulsion = 21812.245879 eV Total energy + Delta-G solvation = -3367.506494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23006 -39.98195 -37.85548 -35.38018 -34.87056 -32.68259 -32.29732 -31.81598 -29.89537 -29.13228 -27.21201 -25.59930 -24.83537 -24.00153 -23.62841 -22.24228 -21.20646 -20.28973 -18.36848 -17.88276 -17.30692 -16.90047 -16.58008 -16.37923 -16.08470 -15.72347 -15.65894 -15.31080 -14.88185 -14.72193 -14.48907 -14.29932 -14.08535 -13.95530 -13.81590 -13.60966 -13.22143 -12.99296 -12.90764 -12.82494 -12.53347 -12.42989 -12.40378 -12.19420 -12.03085 -11.96184 -11.70504 -11.63892 -11.42288 -11.11019 -11.07910 -10.61803 -10.48465 -9.80511 -9.44775 -9.03656 -8.10517 -6.15117 0.35882 0.52315 1.41580 1.42262 1.53618 2.46863 2.62968 2.88461 3.03956 3.25559 3.79903 3.90341 3.94491 4.02938 4.05636 4.13307 4.18246 4.20793 4.28614 4.35045 4.44635 4.47620 4.54586 4.54856 4.62036 4.64090 4.71316 4.73939 4.82235 4.89183 4.95808 5.02433 5.08842 5.11789 5.14046 5.14553 5.21392 5.24893 5.41594 5.46723 5.52446 5.66726 5.68197 5.74362 5.87929 6.11141 6.15176 6.24158 6.32079 6.45356 6.97809 7.50579 9.01308 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.003146 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.124486 B = 8898.897535 C = 9260.088730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.084 4.084 4 C -0.123 4.123 5 C -0.113 4.113 6 C -0.096 4.096 7 C 0.139 3.861 8 H 0.064 0.936 9 C 0.036 3.964 10 N -0.526 5.526 11 C 0.095 3.905 12 H 0.066 0.934 13 C -0.174 4.174 14 C 0.034 3.966 15 C -0.498 4.498 16 H 0.056 0.944 17 C -0.002 4.002 18 N -0.938 5.938 19 Si 0.954 3.046 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.268 1.268 23 C 0.024 3.976 24 C 0.071 3.929 25 O -0.387 6.387 26 C -0.101 4.101 27 C -0.126 4.126 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.050 0.950 40 H -0.008 1.008 41 H 0.004 0.996 42 H 0.259 0.741 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.118 0.882 46 H 0.050 0.950 47 H 0.118 0.882 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.583 -21.155 -1.721 25.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.140 4.140 5 C -0.131 4.131 6 C -0.097 4.097 7 C 0.082 3.918 8 H 0.082 0.918 9 C -0.092 4.092 10 N -0.251 5.251 11 C -0.013 4.013 12 H 0.084 0.916 13 C -0.233 4.233 14 C -0.003 4.003 15 C -0.536 4.536 16 H 0.074 0.926 17 C -0.199 4.199 18 N -0.580 5.580 19 Si 0.780 3.220 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.105 4.105 24 C -0.006 4.006 25 O -0.306 6.306 26 C -0.119 4.119 27 C -0.144 4.144 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.010 0.990 41 H 0.022 0.978 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.135 0.865 46 H 0.069 0.931 47 H 0.136 0.864 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.790 -20.832 -1.416 25.023 hybrid contribution 0.737 0.991 0.042 1.236 sum -13.053 -19.841 -1.375 23.789 Atomic orbital electron populations 1.21739 0.94267 1.02419 1.01841 1.20593 0.96463 0.91161 1.03797 1.20241 0.97971 0.97340 0.92840 1.21226 0.99855 0.94252 0.98697 1.21148 0.98987 0.95690 0.97243 1.19557 1.01815 0.93746 0.94585 1.20849 0.90371 0.89453 0.91174 0.91806 1.22702 0.95319 0.90026 1.01138 1.62260 1.05056 1.12181 1.45558 1.21638 0.86715 0.97560 0.95410 0.91605 1.22376 1.02039 1.00447 0.98416 1.19086 0.94040 0.90881 0.96256 1.21419 1.39984 0.93948 0.98250 0.92598 1.25808 0.95822 0.98035 1.00199 1.70083 1.47362 1.06396 1.34183 0.85608 0.78583 0.77326 0.80465 1.20270 1.21245 1.19228 1.22686 0.95128 0.99840 0.92801 1.22694 0.92901 0.82588 1.02416 1.87919 1.63697 1.23589 1.55368 1.21027 0.98422 0.94871 0.97574 1.21240 1.00188 0.94304 0.98692 0.91001 0.92931 0.93119 0.90192 0.89977 0.83945 0.85159 0.90077 0.94076 0.92071 0.91920 0.93129 0.99025 0.97824 0.93258 0.94171 0.91039 0.86459 0.93118 0.86427 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.89 71.98 0.71 -0.93 16 2 C -0.08 -1.02 6.06 29.85 0.18 -0.84 16 3 C -0.08 -1.51 5.13 -19.87 -0.10 -1.61 16 4 C -0.12 -2.31 9.70 22.27 0.22 -2.10 16 5 C -0.11 -2.55 9.67 22.27 0.22 -2.34 16 6 C -0.10 -2.52 4.98 -19.87 -0.10 -2.62 16 7 C 0.14 4.20 3.01 29.88 0.09 4.29 16 8 H 0.06 2.02 8.01 -2.39 -0.02 2.00 16 9 C 0.04 1.16 4.55 86.31 0.39 1.56 16 10 N -0.53 -20.25 4.37 -870.00 -3.80 -24.06 16 11 C 0.09 3.89 2.33 44.92 0.10 4.00 16 12 H 0.07 2.74 8.13 -2.39 -0.02 2.72 16 13 C -0.17 -5.97 8.49 71.98 0.61 -5.36 16 14 C 0.03 1.78 4.21 29.85 0.13 1.91 16 15 C -0.50 -28.00 8.77 25.60 0.22 -27.77 16 16 H 0.06 3.13 7.75 -2.91 -0.02 3.11 16 17 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 18 N -0.94 -57.01 13.29 21.45 0.28 -56.73 16 19 Si 0.95 45.25 29.54 68.60 2.03 47.27 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 C 0.02 0.87 4.86 86.32 0.42 1.28 16 24 C 0.07 2.24 7.01 72.01 0.50 2.74 16 25 O -0.39 -12.24 9.79 -148.98 -1.46 -13.70 16 26 C -0.10 -2.47 9.36 22.27 0.21 -2.26 16 27 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 28 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 32 H 0.08 0.84 8.08 -2.39 -0.02 0.83 16 33 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.13 2.68 8.04 -2.91 -0.02 2.65 16 35 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.04 1.29 6.54 -2.39 -0.02 1.27 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 1.88 6.55 -2.39 -0.02 1.87 16 39 H 0.05 1.75 6.45 -2.39 -0.02 1.73 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.00 0.19 6.23 -2.38 -0.01 0.18 16 42 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.04 1.40 6.43 -2.39 -0.02 1.38 16 44 H 0.07 3.07 6.15 -2.39 -0.01 3.06 16 45 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.12 2.96 7.77 -2.91 -0.02 2.94 16 48 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -64.63 375.28 2.44 -62.19 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.91 Total: 17.08 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 4.48 Total: -32.06 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -3.52 Total: -80.78 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -1.46 Total: -13.70 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.63 2.44 -62.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298656816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.045 kcal (2) G-P(sol) polarization free energy of solvation -64.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds